Wall clock time and date at job start Tue Mar 31 2020 06:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50697 * 119.99767 * 2 1 4 4 C 1.50698 * 119.99635 * 179.97438 * 2 1 3 5 5 N 1.46504 * 109.46998 * 95.00646 * 4 2 1 6 6 C 1.34771 * 119.99941 * 179.97438 * 5 4 2 7 7 S 1.71198 * 120.00372 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99955 * 179.97438 * 6 5 4 9 9 C 1.39887 * 120.00303 * 176.39263 * 8 6 5 10 10 C 1.38968 * 120.04048 * 224.18120 * 9 8 6 11 11 C 1.38151 * 120.06980 * 180.02562 * 10 9 8 12 12 C 1.38171 * 120.13665 * 359.72959 * 11 10 9 13 13 C 1.38911 * 120.07437 * 0.54583 * 12 11 10 14 14 O 1.35752 * 120.03624 * 179.72422 * 13 12 11 15 15 C 1.34835 * 116.99768 * 353.15338 * 14 13 12 16 16 H 1.07997 * 120.00260 * 4.69870 * 15 14 13 17 17 C 1.38651 * 119.99781 * 184.70402 * 15 14 13 18 18 N 1.31557 * 120.00229 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99886 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47128 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47111 * 119.99666 * 19 17 15 22 22 H 1.48504 * 109.46854 * 239.99770 * 19 17 15 23 23 C 1.38722 * 120.03341 * 44.19985 * 9 8 6 24 24 H 1.08004 * 119.99803 * 0.02562 * 1 2 3 25 25 H 1.07996 * 120.00046 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47015 * 239.99640 * 3 2 1 27 27 H 1.09003 * 109.47484 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.46579 * 119.99764 * 3 2 1 29 29 H 1.08995 * 109.47660 * 335.00519 * 4 2 1 30 30 H 1.09001 * 109.46647 * 214.99946 * 4 2 1 31 31 H 0.97007 * 120.00027 * 359.97438 * 5 4 2 32 32 H 0.97004 * 120.00208 * 356.38796 * 8 6 5 33 33 H 1.08005 * 119.96556 * 359.97438 * 10 9 8 34 34 H 1.08001 * 119.93606 * 179.97438 * 11 10 9 35 35 H 1.08009 * 119.96626 * 180.27675 * 12 11 10 36 36 H 0.96993 * 120.00200 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.07292 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4120 -1.6684 -1.3752 6 6 3.0935 -2.8050 -1.6200 7 16 3.5526 -3.8241 -0.3233 8 7 3.4137 -3.1395 -2.8858 9 6 4.1857 -4.2793 -3.1342 10 6 5.2296 -4.2265 -4.0500 11 6 5.9921 -5.3519 -4.2962 12 6 5.7232 -6.5316 -3.6290 13 6 4.6776 -6.5925 -2.7165 14 8 4.4106 -7.7534 -2.0655 15 6 5.1023 -8.8446 -2.4514 16 1 5.8831 -8.7550 -3.1922 17 6 4.8110 -10.0818 -1.8974 18 7 3.8601 -10.1909 -0.9948 19 14 5.7697 -11.5934 -2.4314 20 1 6.7778 -11.2057 -3.4506 21 1 6.4565 -12.1851 -1.2553 22 1 4.8365 -12.5913 -3.0135 23 6 3.9099 -5.4637 -2.4668 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 2.6902 1.3628 -0.8900 27 1 1.3552 2.1336 -0.0005 28 1 2.6901 1.3628 0.8901 29 1 1.4386 -2.0853 0.4351 30 1 2.9742 -1.1986 0.5900 31 1 2.1523 -1.0908 -2.1100 32 1 3.1087 -2.5899 -3.6247 33 1 5.4445 -3.3049 -4.5706 34 1 6.8026 -5.3085 -5.0087 35 1 6.3240 -7.4086 -3.8202 36 1 3.6566 -11.0563 -0.6069 37 1 3.0988 -5.5076 -1.7551 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044196788.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:10 Heat of formation + Delta-G solvation = 21.324670 kcal Electronic energy + Delta-G solvation = -19931.202764 eV Core-core repulsion = 16800.465376 eV Total energy + Delta-G solvation = -3130.737388 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23235 -40.09932 -38.61174 -36.92569 -34.84274 -34.19669 -31.18244 -30.24694 -28.27868 -27.54932 -27.19685 -25.21618 -23.26996 -23.10882 -20.54734 -20.15757 -19.25605 -18.74132 -17.87159 -16.87773 -16.64953 -16.59333 -16.29163 -16.00828 -15.80119 -15.43671 -15.23458 -14.85527 -14.36383 -14.18536 -13.96522 -13.57347 -13.31875 -12.87996 -12.83325 -12.59723 -12.46376 -12.32533 -12.27266 -12.10542 -12.06217 -11.25521 -10.86939 -10.66605 -10.28356 -9.61236 -9.20043 -8.87236 -8.40810 -8.20664 -6.08666 -0.06179 0.60232 0.78663 0.81486 1.00350 1.36677 1.46121 1.56166 1.63818 2.21571 2.55921 2.86542 3.21725 3.56430 3.62197 3.90836 4.19550 4.38459 4.38687 4.42284 4.56321 4.57796 4.73833 4.78595 4.82274 4.91696 4.95319 5.07013 5.14206 5.14948 5.40559 5.52704 5.57906 5.67556 5.76247 5.78534 5.87097 6.09449 6.22157 6.38618 7.02908 7.88861 8.83433 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026389 B = 0.003387 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.792392 B = 8263.758360 C = 9068.639828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.159 4.159 3 C -0.116 4.116 4 C 0.161 3.839 5 N -0.647 5.647 6 C 0.580 3.420 7 S -0.725 6.725 8 N -0.602 5.602 9 C 0.157 3.843 10 C -0.180 4.180 11 C -0.065 4.065 12 C -0.237 4.237 13 C 0.116 3.884 14 O -0.234 6.234 15 C -0.409 4.409 16 H 0.106 0.894 17 C -0.029 4.029 18 N -0.924 5.924 19 Si 1.022 2.978 20 H -0.247 1.247 21 H -0.272 1.272 22 H -0.268 1.268 23 C -0.151 4.151 24 H 0.127 0.873 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.419 0.581 32 H 0.431 0.569 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.122 0.878 36 H 0.270 0.730 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 24.542 -7.507 25.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.160 4.160 3 C -0.173 4.173 4 C 0.038 3.962 5 N -0.276 5.276 6 C 0.218 3.782 7 S -0.598 6.598 8 N -0.229 5.229 9 C 0.063 3.937 10 C -0.201 4.201 11 C -0.084 4.084 12 C -0.257 4.257 13 C 0.064 3.936 14 O -0.141 6.141 15 C -0.485 4.485 16 H 0.123 0.877 17 C -0.226 4.226 18 N -0.563 5.563 19 Si 0.841 3.159 20 H -0.170 1.170 21 H -0.197 1.197 22 H -0.193 1.193 23 C -0.174 4.174 24 H 0.145 0.855 25 H 0.115 0.885 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.260 0.740 32 H 0.273 0.727 33 H 0.179 0.821 34 H 0.176 0.824 35 H 0.140 0.860 36 H 0.079 0.921 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.629 23.747 -6.221 24.815 hybrid contribution -0.314 -0.284 -0.682 0.802 sum -3.944 23.463 -6.902 24.773 Atomic orbital electron populations 1.24186 0.94838 1.03442 0.95989 1.21714 0.95602 0.94364 1.04298 1.20891 1.00536 0.93247 1.02631 1.20668 1.00494 0.94949 0.80089 1.44915 1.51998 1.18637 1.12055 1.21683 0.81598 0.86179 0.88778 1.94178 1.74194 1.55068 1.36388 1.41786 1.50318 1.25783 1.05042 1.16903 0.93935 0.83485 0.99362 1.20847 0.95804 1.00517 1.02892 1.20944 0.98832 0.90607 0.97996 1.21396 1.00878 1.00994 1.02396 1.19582 0.94534 0.87286 0.92162 1.83981 1.60164 1.15136 1.54808 1.21925 1.17108 0.84465 1.25022 0.87715 1.26671 0.98121 1.01718 0.96057 1.70242 1.31706 1.26123 1.28239 0.84492 0.77615 0.75237 0.78573 1.16959 1.19712 1.19326 1.20409 1.03152 0.90708 1.03092 0.85538 0.88474 0.91121 0.90122 0.91551 0.90733 0.90176 0.74023 0.72685 0.82053 0.82360 0.86012 0.92068 0.86716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 13.90 67.77 0.94 -0.51 16 2 C -0.16 -1.85 5.42 -16.50 -0.09 -1.94 16 3 C -0.12 -0.97 10.12 71.23 0.72 -0.25 16 4 C 0.16 3.02 5.29 85.63 0.45 3.48 16 5 N -0.65 -11.46 5.55 -353.91 -1.97 -13.42 16 6 C 0.58 16.42 7.84 179.05 1.40 17.82 16 7 S -0.73 -32.03 24.76 -56.49 -1.40 -33.43 16 8 N -0.60 -14.75 5.32 -190.05 -1.01 -15.76 16 9 C 0.16 5.40 5.96 38.15 0.23 5.62 16 10 C -0.18 -5.17 9.97 22.42 0.22 -4.94 16 11 C -0.07 -2.11 10.03 22.23 0.22 -1.88 16 12 C -0.24 -10.43 9.16 22.41 0.21 -10.23 16 13 C 0.12 6.15 6.64 22.56 0.15 6.30 16 14 O -0.23 -15.15 9.76 -22.81 -0.22 -15.37 16 15 C -0.41 -24.96 9.49 67.92 0.64 -24.32 16 16 H 0.11 5.77 5.21 -2.91 -0.02 5.75 16 17 C -0.03 -1.74 5.49 84.83 0.47 -1.27 16 18 N -0.92 -60.26 13.67 21.61 0.30 -59.96 16 19 Si 1.02 44.78 29.55 68.60 2.03 46.81 16 20 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 23 C -0.15 -7.14 7.81 22.51 0.18 -6.96 16 24 H 0.13 0.74 7.83 -2.91 -0.02 0.72 16 25 H 0.10 1.11 7.99 -2.91 -0.02 1.09 16 26 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.08 0.44 7.78 -2.39 -0.02 0.42 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 1.75 7.84 -2.39 -0.02 1.73 16 30 H 0.08 1.79 7.99 -2.39 -0.02 1.77 16 31 H 0.42 3.84 8.48 -92.70 -0.79 3.06 16 32 H 0.43 5.77 8.84 -92.71 -0.82 4.96 16 33 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 35 H 0.12 5.41 5.65 -2.91 -0.02 5.39 16 36 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 37 H 0.11 6.13 6.00 -9.64 -0.06 6.07 16 Total: -1.00 -89.50 331.39 2.94 -86.57 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -0.53 Total: 23.65 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 5.75 Total: -19.08 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -2.68 Total: -89.15 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.22 Total: -15.37 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: -32.03 SS G_CDS: -1.40 Total: -33.43 kcal Total: -89.50 2.94 -86.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044196788.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.891 kcal (2) G-P(sol) polarization free energy of solvation -89.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds