Wall clock time and date at job start Tue Mar 31 2020 06:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30793 * 1 3 3 Si 1.86797 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47456 * 274.64966 * 3 2 1 5 5 H 1.48496 * 109.47118 * 34.65577 * 3 2 1 6 6 H 1.48508 * 109.46932 * 154.65441 * 3 2 1 7 7 C 1.40005 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00491 * 162.09279 * 7 2 1 9 9 C 1.40826 * 119.99778 * 342.09205 * 7 2 1 10 10 C 1.41045 * 120.08201 * 154.92330 * 9 7 2 11 11 C 1.36057 * 119.91058 * 180.02562 * 10 9 7 12 12 C 1.40339 * 120.08504 * 359.97438 * 11 10 9 13 13 C 1.47054 * 119.91369 * 180.02562 * 12 11 10 14 14 N 1.31785 * 126.29458 * 359.96140 * 13 12 11 15 15 N 1.28667 * 109.33868 * 179.78912 * 14 13 12 16 16 C 1.31683 * 109.38059 * 0.40224 * 15 14 13 17 17 C 1.47609 * 126.25589 * 179.86106 * 16 15 14 18 18 C 1.39713 * 120.15381 * 179.42044 * 17 16 15 19 19 C 1.37913 * 119.83746 * 179.71988 * 18 17 16 20 20 C 1.38395 * 120.16030 * 0.55906 * 19 18 17 21 21 C 1.38395 * 120.31459 * 359.71205 * 20 19 18 22 22 C 1.37915 * 120.15698 * 0.02562 * 21 20 19 23 23 O 1.34817 * 107.48308 * 359.60690 * 16 15 14 24 24 C 1.40329 * 120.17296 * 0.27609 * 12 11 10 25 25 C 1.36058 * 120.08530 * 359.44282 * 24 12 11 26 26 H 0.96999 * 120.00072 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.04488 * 0.02562 * 10 9 7 28 28 H 1.07998 * 119.95948 * 180.02562 * 11 10 9 29 29 H 1.07998 * 120.07895 * 359.97438 * 18 17 16 30 30 H 1.08005 * 119.92314 * 180.27264 * 19 18 17 31 31 H 1.07991 * 119.84142 * 179.74479 * 20 19 18 32 32 H 1.07990 * 119.92187 * 180.02562 * 21 20 19 33 33 H 1.08001 * 120.08453 * 180.02562 * 22 21 20 34 34 H 1.08001 * 119.95894 * 179.70059 * 24 12 11 35 35 H 1.08003 * 120.04710 * 180.26986 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.3911 2.1032 -1.3954 5 1 1.4920 2.6222 0.7961 6 1 3.5852 1.4137 0.5994 7 6 2.0080 -1.2124 -0.0005 8 1 3.0487 -1.2350 -0.2881 9 6 1.3551 -2.4027 0.3739 10 6 1.8237 -3.6455 -0.1005 11 6 1.1899 -4.7932 0.2631 12 6 0.0716 -4.7415 1.1094 13 6 -0.6102 -5.9844 1.5005 14 7 -0.2792 -7.2052 1.1308 15 7 -1.0919 -8.0474 1.6656 16 6 -1.9791 -7.3985 2.3906 17 6 -3.0838 -8.0003 3.1628 18 6 -3.9481 -7.1879 3.9011 19 6 -4.9816 -7.7566 4.6156 20 6 -5.1567 -9.1294 4.6117 21 6 -4.3011 -9.9407 3.8872 22 6 -3.2665 -9.3854 3.1637 23 8 -1.6906 -6.0844 2.3033 24 6 -0.4008 -3.5065 1.5793 25 6 0.2311 -2.3549 1.2248 26 1 -0.4850 0.8400 0.0004 27 1 2.6845 -3.6861 -0.7515 28 1 1.5483 -5.7453 -0.0994 29 1 -3.8096 -6.1168 3.9090 30 1 -5.6531 -7.1295 5.1833 31 1 -5.9652 -9.5695 5.1763 32 1 -4.4438 -11.0111 3.8883 33 1 -2.5997 -10.0196 2.5984 34 1 -1.2646 -3.4704 2.2266 35 1 -0.1304 -1.4051 1.5903 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044368303.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:23 Heat of formation + Delta-G solvation = 71.781870 kcal Electronic energy + Delta-G solvation = -20832.426193 eV Core-core repulsion = 17568.432842 eV Total energy + Delta-G solvation = -3263.993351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.24987 -39.10428 -37.82351 -35.45013 -34.31735 -32.62615 -31.11264 -30.84461 -29.85053 -28.61658 -25.97435 -24.00091 -23.29126 -22.19695 -21.60875 -20.65137 -20.55606 -17.74661 -17.70373 -16.61649 -16.41987 -15.80146 -15.63760 -15.27232 -14.55026 -14.19111 -14.00162 -13.58124 -13.42558 -13.02694 -12.94851 -12.35155 -12.14722 -11.80978 -11.70935 -11.67041 -11.44352 -11.30943 -11.21442 -11.15376 -10.92667 -10.47928 -10.07041 -10.04613 -9.71043 -9.48851 -9.12890 -8.58012 -7.90920 -7.44593 -7.21864 -4.75557 0.61816 1.24273 1.66699 2.53697 2.79629 2.81826 2.85305 2.89944 2.91278 3.32622 3.60712 3.74104 4.28265 4.29832 4.73399 4.78959 4.94758 5.15024 5.24804 5.35473 5.35950 5.63400 5.73705 5.90719 5.95015 6.04753 6.11900 6.27243 6.31476 6.36445 6.42404 6.61206 6.66939 6.74781 6.84761 6.97629 7.26188 7.49130 7.66152 7.72113 7.85818 8.19565 8.41341 8.53599 8.94038 9.67127 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.033105 B = 0.002951 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.595886 B = 9485.042768 C =10252.413549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.070 3.930 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.422 4.422 8 H 0.090 0.910 9 C 0.128 3.872 10 C -0.232 4.232 11 C -0.018 4.018 12 C -0.201 4.201 13 C 0.278 3.722 14 N -0.336 5.336 15 N -0.261 5.261 16 C 0.139 3.861 17 C 0.003 3.997 18 C -0.095 4.095 19 C -0.119 4.119 20 C -0.112 4.112 21 C -0.120 4.120 22 C -0.080 4.080 23 O -0.227 6.227 24 C -0.053 4.053 25 C -0.174 4.174 26 H 0.291 0.709 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.096 0.904 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.528 -7.094 6.892 12.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.153 4.153 3 Si 0.740 3.260 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.449 4.449 8 H 0.108 0.892 9 C 0.124 3.876 10 C -0.251 4.251 11 C -0.037 4.037 12 C -0.206 4.206 13 C 0.079 3.921 14 N -0.185 5.185 15 N -0.110 5.110 16 C -0.068 4.068 17 C 0.002 3.998 18 C -0.115 4.115 19 C -0.137 4.137 20 C -0.130 4.130 21 C -0.138 4.138 22 C -0.099 4.099 23 O -0.110 6.110 24 C -0.073 4.073 25 C -0.194 4.194 26 H 0.102 0.898 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.155 0.845 34 H 0.115 0.885 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.075 -7.920 6.275 12.335 hybrid contribution -0.430 1.745 0.487 1.862 sum -7.505 -6.175 6.762 11.840 Atomic orbital electron populations 1.69801 1.08014 1.30621 1.29703 1.26190 0.94917 1.02318 0.91865 0.86123 0.80832 0.79420 0.79612 1.18993 1.19530 1.17865 1.19907 0.98595 0.91176 1.35191 0.89152 1.17867 0.90314 0.92320 0.87122 1.20675 1.04667 0.92269 1.07536 1.20307 0.92286 0.97784 0.93342 1.16679 1.03440 0.85409 1.15030 1.25982 0.82736 0.96627 0.86748 1.74872 1.22434 0.97003 1.24148 1.74545 1.01633 1.27025 1.07835 1.24954 1.00355 0.78074 1.03464 1.17274 0.92007 0.93079 0.97489 1.21322 0.94180 1.00240 0.95717 1.21058 0.97874 0.95199 0.99618 1.21319 0.99167 0.93754 0.98793 1.21069 0.95093 1.00161 0.97499 1.21199 0.97732 0.92826 0.98174 1.84850 1.41832 1.28132 1.56164 1.20466 0.97548 0.91764 0.97506 1.20928 0.99749 0.96862 1.01819 0.89790 0.87651 0.87430 0.85138 0.85374 0.85701 0.85249 0.84489 0.88536 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.33 10.98 55.55 0.61 -16.72 16 2 C 0.07 1.54 5.12 -17.33 -0.09 1.45 16 3 Si 0.92 16.23 29.60 -169.99 -5.03 11.20 16 4 H -0.27 -4.65 7.11 56.52 0.40 -4.25 16 5 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 6 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16 7 C -0.42 -9.85 9.02 -37.94 -0.34 -10.19 16 8 H 0.09 1.98 7.91 -52.49 -0.42 1.57 16 9 C 0.13 3.09 5.57 -106.79 -0.59 2.50 16 10 C -0.23 -5.29 9.73 -39.30 -0.38 -5.67 16 11 C -0.02 -0.40 9.62 -39.58 -0.38 -0.78 16 12 C -0.20 -4.64 5.89 -104.75 -0.62 -5.25 16 13 C 0.28 6.26 7.96 -14.00 -0.11 6.15 16 14 N -0.34 -7.64 11.90 32.00 0.38 -7.26 16 15 N -0.26 -5.49 11.92 32.09 0.38 -5.11 16 16 C 0.14 2.66 7.98 -13.79 -0.11 2.55 16 17 C 0.00 0.05 5.87 -104.97 -0.62 -0.57 16 18 C -0.09 -1.23 9.73 -39.15 -0.38 -1.61 16 19 C -0.12 -1.20 10.03 -39.64 -0.40 -1.60 16 20 C -0.11 -1.01 10.04 -39.47 -0.40 -1.41 16 21 C -0.12 -1.18 10.03 -39.64 -0.40 -1.58 16 22 C -0.08 -1.02 9.70 -39.15 -0.38 -1.40 16 23 O -0.23 -4.75 10.42 2.43 0.03 -4.72 16 24 C -0.05 -1.20 9.65 -39.58 -0.38 -1.59 16 25 C -0.17 -4.17 8.62 -39.30 -0.34 -4.50 16 26 H 0.29 5.93 8.30 -40.82 -0.34 5.59 16 27 H 0.11 2.19 8.06 -52.48 -0.42 1.77 16 28 H 0.11 2.28 7.84 -52.49 -0.41 1.86 16 29 H 0.13 1.66 7.93 -52.49 -0.42 1.24 16 30 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 31 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 32 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.14 1.72 7.86 -52.49 -0.41 1.31 16 34 H 0.10 2.03 7.91 -52.49 -0.42 1.61 16 35 H 0.12 2.96 6.18 -52.48 -0.32 2.64 16 LS Contribution 316.86 15.07 4.77 4.77 Total: -1.00 -26.99 316.86 -7.99 -34.98 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.22 Total: 6.33 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -5.92 Total: -23.48 kcal Atomic # 7 Polarization: -30.45 SS G_CDS: 1.37 Total: -29.08 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: 0.03 Total: -4.72 kcal Atomic # 14 Polarization: 16.23 SS G_CDS: -5.03 Total: 11.20 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.99 -7.99 -34.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368303.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.763 kcal (2) G-P(sol) polarization free energy of solvation -26.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds