Wall clock time and date at job start Tue Mar 31 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30793 * 1 3 3 Si 1.86797 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47456 * 274.64966 * 3 2 1 5 5 H 1.48496 * 109.47118 * 34.65577 * 3 2 1 6 6 H 1.48508 * 109.46932 * 154.65441 * 3 2 1 7 7 C 1.40005 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00491 * 162.09279 * 7 2 1 9 9 C 1.40826 * 119.99778 * 342.09205 * 7 2 1 10 10 C 1.41045 * 120.08201 * 154.92330 * 9 7 2 11 11 C 1.36057 * 119.91058 * 180.02562 * 10 9 7 12 12 C 1.40339 * 120.08504 * 359.97438 * 11 10 9 13 13 C 1.47054 * 119.91369 * 180.02562 * 12 11 10 14 14 N 1.31785 * 126.29458 * 359.96140 * 13 12 11 15 15 N 1.28667 * 109.33868 * 179.78912 * 14 13 12 16 16 C 1.31683 * 109.38059 * 0.40224 * 15 14 13 17 17 C 1.47609 * 126.25589 * 179.86106 * 16 15 14 18 18 C 1.39713 * 120.15381 * 179.42044 * 17 16 15 19 19 C 1.37913 * 119.83746 * 179.71988 * 18 17 16 20 20 C 1.38395 * 120.16030 * 0.55906 * 19 18 17 21 21 C 1.38395 * 120.31459 * 359.71205 * 20 19 18 22 22 C 1.37915 * 120.15698 * 0.02562 * 21 20 19 23 23 O 1.34817 * 107.48308 * 359.60690 * 16 15 14 24 24 C 1.40329 * 120.17296 * 0.27609 * 12 11 10 25 25 C 1.36058 * 120.08530 * 359.44282 * 24 12 11 26 26 H 0.96999 * 120.00072 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.04488 * 0.02562 * 10 9 7 28 28 H 1.07998 * 119.95948 * 180.02562 * 11 10 9 29 29 H 1.07998 * 120.07895 * 359.97438 * 18 17 16 30 30 H 1.08005 * 119.92314 * 180.27264 * 19 18 17 31 31 H 1.07991 * 119.84142 * 179.74479 * 20 19 18 32 32 H 1.07990 * 119.92187 * 180.02562 * 21 20 19 33 33 H 1.08001 * 120.08453 * 180.02562 * 22 21 20 34 34 H 1.08001 * 119.95894 * 179.70059 * 24 12 11 35 35 H 1.08003 * 120.04710 * 180.26986 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.3911 2.1032 -1.3954 5 1 1.4920 2.6222 0.7961 6 1 3.5852 1.4137 0.5994 7 6 2.0080 -1.2124 -0.0005 8 1 3.0487 -1.2350 -0.2881 9 6 1.3551 -2.4027 0.3739 10 6 1.8237 -3.6455 -0.1005 11 6 1.1899 -4.7932 0.2631 12 6 0.0716 -4.7415 1.1094 13 6 -0.6102 -5.9844 1.5005 14 7 -0.2792 -7.2052 1.1308 15 7 -1.0919 -8.0474 1.6656 16 6 -1.9791 -7.3985 2.3906 17 6 -3.0838 -8.0003 3.1628 18 6 -3.9481 -7.1879 3.9011 19 6 -4.9816 -7.7566 4.6156 20 6 -5.1567 -9.1294 4.6117 21 6 -4.3011 -9.9407 3.8872 22 6 -3.2665 -9.3854 3.1637 23 8 -1.6906 -6.0844 2.3033 24 6 -0.4008 -3.5065 1.5793 25 6 0.2311 -2.3549 1.2248 26 1 -0.4850 0.8400 0.0004 27 1 2.6845 -3.6861 -0.7515 28 1 1.5483 -5.7453 -0.0994 29 1 -3.8096 -6.1168 3.9090 30 1 -5.6531 -7.1295 5.1833 31 1 -5.9652 -9.5695 5.1763 32 1 -4.4438 -11.0111 3.8883 33 1 -2.5997 -10.0196 2.5984 34 1 -1.2646 -3.4704 2.2266 35 1 -0.1304 -1.4051 1.5903 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368303.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:22 Heat of formation + Delta-G solvation = 55.953246 kcal Electronic energy + Delta-G solvation = -20833.112574 eV Core-core repulsion = 17568.432842 eV Total energy + Delta-G solvation = -3264.679732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.88736 -40.03479 -39.57875 -37.10213 -36.02027 -33.95148 -32.36592 -31.99758 -31.62318 -30.14817 -27.63752 -25.34837 -24.81697 -23.35379 -22.99091 -22.25691 -22.21352 -19.45602 -18.99479 -18.26623 -17.83826 -17.31768 -16.83363 -16.66414 -15.84963 -15.64924 -15.32664 -14.81992 -14.57302 -14.43366 -14.11299 -14.04549 -13.80607 -13.49677 -13.38165 -12.97143 -12.93047 -12.78598 -12.63195 -12.43551 -12.15284 -11.95347 -11.72455 -11.53440 -11.44854 -11.06469 -10.00162 -9.91241 -9.71027 -9.11701 -8.88153 -6.53746 -0.64180 0.17093 0.37725 1.04714 1.09775 1.25368 1.38376 1.41843 1.55565 1.68917 2.13300 2.58268 2.79105 2.88656 3.44826 3.55023 3.83938 3.96320 4.13004 4.18854 4.27891 4.35760 4.38434 4.45765 4.57001 4.62373 4.86456 4.87634 4.94230 5.05364 5.07480 5.18453 5.40634 5.43102 5.48368 5.49402 5.70880 5.88566 5.91564 5.92184 6.08201 6.42022 6.64370 6.75117 7.29330 8.04546 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.033105 B = 0.002951 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.595886 B = 9485.042768 C =10252.413549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.034 3.966 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.253 1.253 7 C -0.446 4.446 8 H 0.098 0.902 9 C 0.102 3.898 10 C -0.241 4.241 11 C -0.021 4.021 12 C -0.213 4.213 13 C 0.260 3.740 14 N -0.350 5.350 15 N -0.293 5.293 16 C 0.165 3.835 17 C -0.043 4.043 18 C -0.103 4.103 19 C -0.117 4.117 20 C -0.090 4.090 21 C -0.115 4.115 22 C -0.085 4.085 23 O -0.233 6.233 24 C -0.055 4.055 25 C -0.189 4.189 26 H 0.301 0.699 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.159 0.841 31 H 0.167 0.833 32 H 0.164 0.836 33 H 0.131 0.869 34 H 0.108 0.892 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.354 -7.683 8.401 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.187 4.187 3 Si 0.811 3.189 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.177 1.177 7 C -0.472 4.472 8 H 0.116 0.884 9 C 0.098 3.902 10 C -0.260 4.260 11 C -0.041 4.041 12 C -0.217 4.217 13 C 0.059 3.941 14 N -0.198 5.198 15 N -0.140 5.140 16 C -0.043 4.043 17 C -0.044 4.044 18 C -0.123 4.123 19 C -0.135 4.135 20 C -0.108 4.108 21 C -0.133 4.133 22 C -0.104 4.104 23 O -0.115 6.115 24 C -0.075 4.075 25 C -0.209 4.209 26 H 0.112 0.888 27 H 0.138 0.862 28 H 0.134 0.866 29 H 0.142 0.858 30 H 0.177 0.823 31 H 0.185 0.815 32 H 0.181 0.819 33 H 0.149 0.851 34 H 0.126 0.874 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.907 -8.553 7.779 14.595 hybrid contribution -0.124 1.710 0.161 1.722 sum -9.031 -6.843 7.941 13.836 Atomic orbital electron populations 1.69828 1.09473 1.32179 1.29636 1.27061 0.95557 1.05320 0.90732 0.85022 0.79298 0.74785 0.79799 1.18326 1.18755 1.17650 1.20222 0.99148 0.91868 1.35948 0.88380 1.18196 0.90889 0.93346 0.87786 1.20865 1.05262 0.92012 1.07870 1.20429 0.92242 0.98122 0.93303 1.16816 1.03821 0.85744 1.15338 1.25878 0.83724 0.96498 0.88036 1.74779 1.23176 0.97281 1.24550 1.74497 1.02823 1.26832 1.09855 1.25952 0.99821 0.77227 1.01308 1.17545 0.92534 0.94432 0.99930 1.21441 0.94836 0.99964 0.96018 1.21451 0.96948 0.96370 0.98692 1.21872 0.98937 0.93124 0.96912 1.21485 0.93627 1.02077 0.96082 1.21335 0.98746 0.91674 0.98684 1.84846 1.41477 1.29247 1.55977 1.20576 0.97786 0.91564 0.97540 1.20917 1.00486 0.96814 1.02667 0.88774 0.86163 0.86573 0.85830 0.82301 0.81513 0.81855 0.85135 0.87420 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.44 10.98 21.84 0.24 -36.20 16 2 C 0.03 1.49 5.12 85.28 0.44 1.93 16 3 Si 0.99 32.73 29.60 68.60 2.03 34.76 16 4 H -0.26 -8.25 7.11 99.48 0.71 -7.54 16 5 H -0.26 -8.31 7.11 99.48 0.71 -7.60 16 6 H -0.25 -8.21 7.11 99.48 0.71 -7.50 16 7 C -0.45 -21.16 9.02 23.33 0.21 -20.95 16 8 H 0.10 4.34 7.91 -2.91 -0.02 4.32 16 9 C 0.10 5.09 5.57 -21.27 -0.12 4.97 16 10 C -0.24 -11.32 9.73 22.45 0.22 -11.10 16 11 C -0.02 -1.00 9.62 22.27 0.21 -0.78 16 12 C -0.21 -10.21 5.89 -19.95 -0.12 -10.33 16 13 C 0.26 12.17 7.96 87.01 0.69 12.86 16 14 N -0.35 -16.52 11.90 -166.16 -1.98 -18.50 16 15 N -0.29 -12.71 11.92 -166.02 -1.98 -14.69 16 16 C 0.16 6.48 7.98 87.19 0.70 7.18 16 17 C -0.04 -1.27 5.87 -20.09 -0.12 -1.39 16 18 C -0.10 -2.52 9.73 22.55 0.22 -2.30 16 19 C -0.12 -1.91 10.03 22.23 0.22 -1.69 16 20 C -0.09 -1.17 10.04 22.34 0.22 -0.95 16 21 C -0.12 -1.80 10.03 22.23 0.22 -1.58 16 22 C -0.08 -2.04 9.70 22.55 0.22 -1.82 16 23 O -0.23 -10.07 10.42 -14.24 -0.15 -10.22 16 24 C -0.05 -2.60 9.65 22.27 0.21 -2.38 16 25 C -0.19 -9.42 8.62 22.45 0.19 -9.22 16 26 H 0.30 12.29 8.30 -92.71 -0.77 11.52 16 27 H 0.12 5.12 8.06 -2.91 -0.02 5.10 16 28 H 0.12 5.09 7.84 -2.91 -0.02 5.07 16 29 H 0.12 3.12 7.93 -2.91 -0.02 3.09 16 30 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 31 H 0.17 0.89 8.06 -2.92 -0.02 0.87 16 32 H 0.16 1.47 8.06 -2.92 -0.02 1.45 16 33 H 0.13 3.23 7.86 -2.91 -0.02 3.21 16 34 H 0.11 4.71 7.91 -2.91 -0.02 4.69 16 35 H 0.12 5.83 6.18 -2.91 -0.02 5.81 16 Total: -1.00 -61.23 316.86 2.92 -58.31 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 1.13 Total: 24.10 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: 3.63 Total: -37.57 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -3.72 Total: -69.39 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -0.15 Total: -10.22 kcal Atomic # 14 Polarization: 32.73 SS G_CDS: 2.03 Total: 34.76 kcal Total: -61.23 2.92 -58.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368303.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.265 kcal (2) G-P(sol) polarization free energy of solvation -61.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds