Wall clock time and date at job start Tue Mar 31 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.36063 * 120.00043 * 59.64279 * 3 2 1 5 5 C 1.46919 * 120.00107 * 168.80013 * 4 3 2 6 6 C 1.40035 * 120.14578 * 316.90170 * 5 4 3 7 7 C 1.37893 * 119.94980 * 179.78804 * 6 5 4 8 8 C 1.38311 * 120.26090 * 0.48917 * 7 6 5 9 9 C 1.39028 * 120.29932 * 359.73969 * 8 7 6 10 10 O 1.35765 * 119.97767 * 179.97438 * 9 8 7 11 11 C 1.34823 * 117.00156 * 174.51041 * 10 9 8 12 12 H 1.07999 * 119.99959 * 5.05059 * 11 10 9 13 13 C 1.38664 * 120.00193 * 185.05831 * 11 10 9 14 14 N 1.31562 * 119.99519 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00156 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47215 * 89.99563 * 15 13 11 17 17 H 1.48492 * 109.47020 * 209.99560 * 15 13 11 18 18 H 1.48505 * 109.46783 * 329.99686 * 15 13 11 19 19 C 1.38538 * 120.04556 * 0.02562 * 9 8 7 20 20 C 1.48031 * 119.99632 * 239.64068 * 3 2 1 21 21 C 1.39516 * 119.74406 * 346.80398 * 20 3 2 22 22 C 1.38335 * 119.05535 * 179.97438 * 21 20 3 23 23 C 1.38833 * 118.52634 * 359.97438 * 22 21 20 24 24 C 1.38253 * 119.39712 * 0.25738 * 23 22 21 25 25 N 1.31761 * 120.90840 * 359.47332 * 24 23 22 26 26 H 1.07999 * 120.00291 * 348.79707 * 4 3 2 27 27 H 1.08004 * 120.02391 * 0.02562 * 6 5 4 28 28 H 1.08005 * 119.87483 * 180.22443 * 7 6 5 29 29 H 1.07994 * 119.84939 * 179.71951 * 8 7 6 30 30 H 0.96994 * 119.99258 * 180.02562 * 14 13 11 31 31 H 1.07998 * 120.12548 * 179.97438 * 19 9 8 32 32 H 1.07999 * 120.47204 * 359.97438 * 21 20 3 33 33 H 1.08006 * 120.73389 * 180.02562 * 22 21 20 34 34 H 1.07997 * 120.29948 * 179.97438 * 23 22 21 35 35 H 1.07998 * 119.54156 * 179.74108 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2487 -0.5946 -1.0168 5 6 4.6968 -0.3868 -1.1521 6 6 5.2430 0.8912 -0.9805 7 6 6.6032 1.0808 -1.1042 8 6 7.4308 0.0149 -1.4073 9 6 6.8993 -1.2575 -1.5846 10 8 7.7177 -2.2990 -1.8826 11 6 7.1568 -3.5242 -1.9295 12 1 6.0885 -3.6337 -1.8155 13 6 7.9517 -4.6436 -2.1241 14 7 9.2531 -4.5101 -2.2633 15 14 7.1745 -6.3410 -2.1898 16 1 6.8083 -6.6638 -3.5923 17 1 8.1425 -7.3484 -1.6866 18 1 5.9549 -6.3600 -1.3428 19 6 5.5351 -1.4632 -1.4586 20 6 3.3079 0.6489 1.1062 21 6 2.6321 1.4882 1.9925 22 6 3.3373 2.0862 3.0214 23 6 4.6965 1.8259 3.1326 24 6 5.3041 0.9876 2.2164 25 7 4.6090 0.4260 1.2481 26 1 2.7244 -1.2198 -1.7243 27 1 4.5998 1.7269 -0.7477 28 1 7.0236 2.0663 -0.9680 29 1 8.4946 0.1718 -1.5071 30 1 9.8090 -5.2931 -2.3998 31 1 5.1208 -2.4510 -1.5964 32 1 1.5736 1.6685 1.8769 33 1 2.8413 2.7404 3.7232 34 1 5.2748 2.2779 3.9248 35 1 6.3621 0.7868 2.2982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048638706.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:57 Heat of formation + Delta-G solvation = 100.074832 kcal Electronic energy + Delta-G solvation = -21573.068871 eV Core-core repulsion = 18310.302395 eV Total energy + Delta-G solvation = -3262.766476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.38262 -38.89087 -37.16836 -36.44847 -34.24610 -32.36396 -32.21572 -31.06332 -29.28250 -28.64595 -25.44239 -24.49972 -23.44127 -22.61326 -21.49920 -20.21451 -18.28604 -17.86032 -16.90035 -16.20368 -16.02809 -15.20735 -15.09029 -14.68288 -14.45064 -14.07154 -14.02020 -13.74976 -13.39979 -13.36612 -13.16681 -13.06585 -12.55159 -12.39970 -12.29668 -11.77630 -11.67190 -11.35959 -10.96629 -10.79683 -10.74474 -10.43475 -10.23846 -9.74187 -9.41948 -9.32082 -8.80070 -8.66900 -7.77530 -7.03507 -6.42556 -4.01558 0.37591 1.24478 1.48551 2.29279 2.48447 2.56816 3.13608 3.15319 3.19510 3.30715 3.70951 3.98272 4.02890 4.40606 4.59500 4.67265 4.84211 5.02514 5.06349 5.10189 5.16203 5.31513 5.41824 5.64720 5.67232 5.79446 5.85221 5.98033 6.13864 6.15666 6.21645 6.32863 6.66697 6.71012 6.80915 7.06289 7.21431 7.29455 7.40695 7.43374 7.78218 8.01364 8.04257 9.03447 9.73940 10.75648 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016985 B = 0.004459 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.161845 B = 6278.082189 C = 7010.380425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.268 3.732 3 C -0.070 4.070 4 C 0.055 3.945 5 C -0.029 4.029 6 C -0.132 4.132 7 C -0.088 4.088 8 C -0.173 4.173 9 C 0.146 3.854 10 O -0.181 6.181 11 C -0.390 4.390 12 H 0.090 0.910 13 C 0.040 3.960 14 N -0.864 5.864 15 Si 0.937 3.063 16 H -0.274 1.274 17 H -0.278 1.278 18 H -0.268 1.268 19 C -0.192 4.192 20 C 0.179 3.821 21 C -0.168 4.168 22 C -0.078 4.078 23 C -0.177 4.177 24 C 0.109 3.891 25 N -0.434 5.434 26 H 0.137 0.863 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.269 0.731 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.410 11.254 7.493 15.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.047 4.047 3 C -0.075 4.075 4 C 0.031 3.969 5 C -0.029 4.029 6 C -0.152 4.152 7 C -0.107 4.107 8 C -0.192 4.192 9 C 0.093 3.907 10 O -0.085 6.085 11 C -0.467 4.467 12 H 0.108 0.892 13 C -0.164 4.164 14 N -0.499 5.499 15 Si 0.762 3.238 16 H -0.199 1.199 17 H -0.203 1.203 18 H -0.192 1.192 19 C -0.212 4.212 20 C 0.042 3.958 21 C -0.188 4.188 22 C -0.104 4.104 23 C -0.197 4.197 24 C -0.050 4.050 25 N -0.141 5.141 26 H 0.155 0.845 27 H 0.116 0.884 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.079 0.921 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.312 10.538 6.862 15.647 hybrid contribution -0.439 -0.304 0.743 0.915 sum -9.751 10.234 7.605 16.051 Atomic orbital electron populations 1.81238 1.11819 1.09306 1.08251 1.25483 0.92329 0.93408 0.93441 1.16218 0.83393 1.09668 0.98189 1.22825 0.94169 0.88099 0.91762 1.18212 0.90042 0.94028 1.00656 1.20414 0.94632 0.95025 1.05141 1.20408 0.92989 0.97179 1.00115 1.20291 0.99597 0.90831 1.08496 1.19150 0.89373 0.89222 0.92917 1.84001 1.34584 1.13740 1.76166 1.21259 0.93382 0.80379 1.51671 0.89220 1.25239 0.95312 0.99152 0.96719 1.70035 1.03740 1.30712 1.45452 0.85768 0.78702 0.80503 0.78812 1.19934 1.20320 1.19224 1.21210 0.93313 0.98674 1.07965 1.19242 0.89930 0.93666 0.92954 1.22018 1.00932 0.99002 0.96869 1.21411 0.94299 0.97794 0.96858 1.22200 0.95528 1.00818 1.01132 1.22834 1.00519 0.92535 0.89074 1.68321 1.05660 1.21346 1.18793 0.84524 0.88445 0.87302 0.86727 0.92116 0.85363 0.85650 0.85143 0.85020 0.82472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.30 18.54 41.84 0.78 -5.53 16 2 C 0.27 3.55 14.07 -22.47 -0.32 3.23 16 3 C -0.07 -0.92 5.69 -104.73 -0.60 -1.52 16 4 C 0.06 0.75 9.46 -36.85 -0.35 0.40 16 5 C -0.03 -0.48 4.40 -105.11 -0.46 -0.94 16 6 C -0.13 -2.08 6.53 -39.03 -0.25 -2.33 16 7 C -0.09 -1.43 10.02 -39.68 -0.40 -1.83 16 8 C -0.17 -3.36 9.99 -39.26 -0.39 -3.75 16 9 C 0.15 3.29 6.64 -39.18 -0.26 3.03 16 10 O -0.18 -4.94 9.76 0.02 0.00 -4.94 16 11 C -0.39 -10.52 9.48 30.89 0.29 -10.23 16 12 H 0.09 2.22 5.20 -52.49 -0.27 1.95 16 13 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 14 N -0.86 -24.86 13.67 55.48 0.76 -24.10 16 15 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 16 16 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 17 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 19 C -0.19 -3.82 8.91 -38.88 -0.35 -4.16 16 20 C 0.18 2.37 5.50 -82.97 -0.46 1.92 16 21 C -0.17 -1.90 9.47 -39.07 -0.37 -2.27 16 22 C -0.08 -0.74 10.16 -39.33 -0.40 -1.14 16 23 C -0.18 -1.70 10.11 -39.36 -0.40 -2.10 16 24 C 0.11 1.31 11.17 -17.58 -0.20 1.12 16 25 N -0.43 -6.23 5.56 -9.80 -0.05 -6.28 16 26 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.10 1.41 7.03 -52.48 -0.37 1.04 16 28 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 29 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.13 2.57 5.63 -52.49 -0.30 2.28 16 32 H 0.13 1.31 7.23 -52.49 -0.38 0.93 16 33 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.16 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 317.24 15.07 4.78 4.78 Total: -1.00 -30.61 317.24 -6.75 -37.36 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -2.99 Total: 3.18 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -5.00 Total: -19.60 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 1.48 Total: -35.91 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: 0.00 Total: -4.94 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.61 -6.75 -37.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048638706.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.431 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds