Wall clock time and date at job start Tue Mar 31 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.36063 * 120.00043 * 59.64279 * 3 2 1 5 5 C 1.46919 * 120.00107 * 168.80013 * 4 3 2 6 6 C 1.40035 * 120.14578 * 316.90170 * 5 4 3 7 7 C 1.37893 * 119.94980 * 179.78804 * 6 5 4 8 8 C 1.38311 * 120.26090 * 0.48917 * 7 6 5 9 9 C 1.39028 * 120.29932 * 359.73969 * 8 7 6 10 10 O 1.35765 * 119.97767 * 179.97438 * 9 8 7 11 11 C 1.34823 * 117.00156 * 174.51041 * 10 9 8 12 12 H 1.07999 * 119.99959 * 5.05059 * 11 10 9 13 13 C 1.38664 * 120.00193 * 185.05831 * 11 10 9 14 14 N 1.31562 * 119.99519 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00156 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47215 * 89.99563 * 15 13 11 17 17 H 1.48492 * 109.47020 * 209.99560 * 15 13 11 18 18 H 1.48505 * 109.46783 * 329.99686 * 15 13 11 19 19 C 1.38538 * 120.04556 * 0.02562 * 9 8 7 20 20 C 1.48031 * 119.99632 * 239.64068 * 3 2 1 21 21 C 1.39516 * 119.74406 * 346.80398 * 20 3 2 22 22 C 1.38335 * 119.05535 * 179.97438 * 21 20 3 23 23 C 1.38833 * 118.52634 * 359.97438 * 22 21 20 24 24 C 1.38253 * 119.39712 * 0.25738 * 23 22 21 25 25 N 1.31761 * 120.90840 * 359.47332 * 24 23 22 26 26 H 1.07999 * 120.00291 * 348.79707 * 4 3 2 27 27 H 1.08004 * 120.02391 * 0.02562 * 6 5 4 28 28 H 1.08005 * 119.87483 * 180.22443 * 7 6 5 29 29 H 1.07994 * 119.84939 * 179.71951 * 8 7 6 30 30 H 0.96994 * 119.99258 * 180.02562 * 14 13 11 31 31 H 1.07998 * 120.12548 * 179.97438 * 19 9 8 32 32 H 1.07999 * 120.47204 * 359.97438 * 21 20 3 33 33 H 1.08006 * 120.73389 * 180.02562 * 22 21 20 34 34 H 1.07997 * 120.29948 * 179.97438 * 23 22 21 35 35 H 1.07998 * 119.54156 * 179.74108 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2487 -0.5946 -1.0168 5 6 4.6968 -0.3868 -1.1521 6 6 5.2430 0.8912 -0.9805 7 6 6.6032 1.0808 -1.1042 8 6 7.4308 0.0149 -1.4073 9 6 6.8993 -1.2575 -1.5846 10 8 7.7177 -2.2990 -1.8826 11 6 7.1568 -3.5242 -1.9295 12 1 6.0885 -3.6337 -1.8155 13 6 7.9517 -4.6436 -2.1241 14 7 9.2531 -4.5101 -2.2633 15 14 7.1745 -6.3410 -2.1898 16 1 6.8083 -6.6638 -3.5923 17 1 8.1425 -7.3484 -1.6866 18 1 5.9549 -6.3600 -1.3428 19 6 5.5351 -1.4632 -1.4586 20 6 3.3079 0.6489 1.1062 21 6 2.6321 1.4882 1.9925 22 6 3.3373 2.0862 3.0214 23 6 4.6965 1.8259 3.1326 24 6 5.3041 0.9876 2.2164 25 7 4.6090 0.4260 1.2481 26 1 2.7244 -1.2198 -1.7243 27 1 4.5998 1.7269 -0.7477 28 1 7.0236 2.0663 -0.9680 29 1 8.4946 0.1718 -1.5071 30 1 9.8090 -5.2931 -2.3998 31 1 5.1208 -2.4510 -1.5964 32 1 1.5736 1.6685 1.8769 33 1 2.8413 2.7404 3.7232 34 1 5.2748 2.2779 3.9248 35 1 6.3621 0.7868 2.2982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048638706.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:56 Heat of formation + Delta-G solvation = 83.779536 kcal Electronic energy + Delta-G solvation = -21573.775488 eV Core-core repulsion = 18310.302395 eV Total energy + Delta-G solvation = -3263.473093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.39132 -40.42548 -38.44010 -37.84448 -35.44228 -34.14064 -33.23795 -32.20732 -30.59633 -30.05393 -27.30324 -25.69313 -24.34804 -23.67612 -23.03369 -21.56817 -19.78762 -19.08894 -18.55283 -17.04822 -16.99421 -16.74573 -16.24707 -16.20399 -15.86234 -15.40830 -15.26823 -15.21459 -14.71313 -14.47284 -14.38685 -14.17092 -13.94673 -13.65314 -13.50709 -13.34145 -12.95171 -12.64893 -12.46073 -12.27433 -12.23697 -12.07541 -11.24776 -11.16684 -10.84077 -10.60681 -10.27318 -9.79640 -9.13819 -8.52073 -8.38817 -6.05219 -0.69037 0.34414 0.50664 0.93322 1.05395 1.38764 1.47090 1.48651 1.54952 2.22730 2.24630 2.61903 2.96250 3.09309 3.29436 3.44609 3.65281 3.78315 4.02012 4.09890 4.21119 4.28521 4.29518 4.39192 4.48710 4.66848 4.72334 4.84175 4.91718 5.02437 5.21461 5.22220 5.29971 5.33404 5.36467 5.73691 5.79023 5.82853 5.86246 6.11752 6.29947 6.35503 7.07070 7.12885 7.91288 8.84697 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016985 B = 0.004459 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.161845 B = 6278.082189 C = 7010.380425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.286 3.714 3 C -0.046 4.046 4 C 0.037 3.963 5 C -0.015 4.015 6 C -0.107 4.107 7 C -0.077 4.077 8 C -0.184 4.184 9 C 0.108 3.892 10 O -0.236 6.236 11 C -0.405 4.405 12 H 0.101 0.899 13 C -0.023 4.023 14 N -0.923 5.923 15 Si 1.011 2.989 16 H -0.264 1.264 17 H -0.274 1.274 18 H -0.255 1.255 19 C -0.204 4.204 20 C 0.151 3.849 21 C -0.165 4.165 22 C -0.073 4.073 23 C -0.160 4.160 24 C 0.090 3.910 25 N -0.470 5.470 26 H 0.159 0.841 27 H 0.122 0.878 28 H 0.145 0.855 29 H 0.109 0.891 30 H 0.270 0.730 31 H 0.119 0.881 32 H 0.134 0.866 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.080 13.399 9.314 19.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.028 4.028 3 C -0.050 4.050 4 C 0.013 3.987 5 C -0.016 4.016 6 C -0.126 4.126 7 C -0.095 4.095 8 C -0.203 4.203 9 C 0.058 3.942 10 O -0.144 6.144 11 C -0.481 4.481 12 H 0.118 0.882 13 C -0.220 4.220 14 N -0.562 5.562 15 Si 0.831 3.169 16 H -0.189 1.189 17 H -0.199 1.199 18 H -0.178 1.178 19 C -0.223 4.223 20 C 0.015 3.985 21 C -0.185 4.185 22 C -0.098 4.098 23 C -0.179 4.179 24 C -0.068 4.068 25 N -0.178 5.178 26 H 0.176 0.824 27 H 0.140 0.860 28 H 0.163 0.837 29 H 0.128 0.872 30 H 0.079 0.921 31 H 0.136 0.864 32 H 0.152 0.848 33 H 0.182 0.818 34 H 0.181 0.819 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.026 12.737 8.693 19.556 hybrid contribution 0.188 -0.571 0.408 0.726 sum -11.839 12.166 9.101 19.261 Atomic orbital electron populations 1.81272 1.12369 1.09846 1.08949 1.25311 0.91999 0.92771 0.92725 1.16223 0.83184 1.08002 0.97632 1.22795 0.92629 0.89851 0.93412 1.18369 0.91295 0.93337 0.98587 1.20741 0.94682 0.95292 1.01924 1.20740 0.92903 0.97625 0.98256 1.20483 1.00039 0.90755 1.09043 1.19664 0.90421 0.89278 0.94791 1.83957 1.36487 1.14654 1.79273 1.21735 0.94077 0.81025 1.51284 0.88218 1.26450 0.95798 1.03369 0.96393 1.70184 1.05539 1.31859 1.48617 0.84682 0.78036 0.74829 0.79320 1.18918 1.19934 1.17824 1.21191 0.92721 0.99384 1.09004 1.19306 0.89984 0.95285 0.93914 1.22184 1.01381 0.98312 0.96671 1.21833 0.94209 0.97288 0.96503 1.22513 0.95849 0.98987 1.00561 1.23024 1.00770 0.93325 0.89654 1.68155 1.06513 1.22506 1.20637 0.82371 0.86017 0.83710 0.87246 0.92128 0.86370 0.84824 0.81784 0.81879 0.82350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -12.08 18.54 19.01 0.35 -11.72 16 2 C 0.29 6.85 14.07 88.33 1.24 8.09 16 3 C -0.05 -1.09 5.69 -19.94 -0.11 -1.21 16 4 C 0.04 0.94 9.46 24.04 0.23 1.16 16 5 C -0.02 -0.49 4.40 -20.18 -0.09 -0.58 16 6 C -0.11 -3.12 6.53 22.62 0.15 -2.97 16 7 C -0.08 -2.36 10.02 22.21 0.22 -2.14 16 8 C -0.18 -7.32 9.99 22.48 0.22 -7.10 16 9 C 0.11 5.10 6.64 22.53 0.15 5.25 16 10 O -0.24 -13.84 9.76 -22.83 -0.22 -14.06 16 11 C -0.40 -23.08 9.48 67.92 0.64 -22.44 16 12 H 0.10 5.20 5.20 -2.91 -0.02 5.18 16 13 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 14 N -0.92 -56.32 13.67 21.62 0.30 -56.02 16 15 Si 1.01 42.73 29.55 68.60 2.03 44.76 16 16 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 19 C -0.20 -8.32 8.91 22.73 0.20 -8.12 16 20 C 0.15 3.59 5.50 41.91 0.23 3.82 16 21 C -0.17 -3.11 9.47 22.60 0.21 -2.90 16 22 C -0.07 -1.05 10.16 22.44 0.23 -0.82 16 23 C -0.16 -2.39 10.11 22.42 0.23 -2.17 16 24 C 0.09 1.94 11.17 84.71 0.95 2.89 16 25 N -0.47 -12.46 5.56 -184.93 -1.03 -13.49 16 26 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 27 H 0.12 3.05 7.03 -2.91 -0.02 3.03 16 28 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 29 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 30 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.12 4.96 5.63 -2.91 -0.02 4.94 16 32 H 0.13 2.28 7.23 -2.91 -0.02 2.26 16 33 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 35 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -71.46 317.24 7.73 -63.73 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 1.14 Total: 16.86 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 5.17 Total: -30.05 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -0.38 Total: -81.24 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.22 Total: -14.06 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -71.46 7.73 -63.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048638706.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.512 kcal (2) G-P(sol) polarization free energy of solvation -71.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds