Wall clock time and date at job start Tue Mar 31 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36071 * 120.00243 * 36.91659 * 3 2 1 5 5 C 1.46919 * 119.99466 * 352.79990 * 4 3 2 6 6 C 1.40029 * 120.15422 * 330.92994 * 5 4 3 7 7 C 1.37899 * 119.95369 * 179.79189 * 6 5 4 8 8 C 1.38309 * 120.25738 * 0.49076 * 7 6 5 9 9 C 1.39028 * 120.30255 * 359.74435 * 8 7 6 10 10 O 1.35762 * 119.97444 * 180.02562 * 9 8 7 11 11 C 1.34828 * 116.99559 * 186.01000 * 10 9 8 12 12 H 1.07994 * 120.00462 * 354.89959 * 11 10 9 13 13 C 1.38657 * 119.99958 * 174.90191 * 11 10 9 14 14 N 1.31553 * 120.00350 * 179.97438 * 13 11 10 15 15 Si 1.86809 * 119.99891 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46902 * 90.00063 * 15 13 11 17 17 H 1.48501 * 109.47028 * 210.00057 * 15 13 11 18 18 H 1.48494 * 109.46820 * 330.00258 * 15 13 11 19 19 C 1.38539 * 120.04526 * 0.02562 * 9 8 7 20 20 C 1.48031 * 120.00014 * 216.92220 * 3 2 1 21 21 C 1.39516 * 119.73982 * 0.02562 * 20 3 2 22 22 C 1.38335 * 119.05425 * 180.02562 * 21 20 3 23 23 C 1.38839 * 118.52371 * 359.74799 * 22 21 20 24 24 C 1.38252 * 119.39944 * 0.47811 * 23 22 21 25 25 N 1.31759 * 120.90418 * 359.51003 * 24 23 22 26 26 H 1.07990 * 120.00285 * 172.79125 * 4 3 2 27 27 H 1.08002 * 120.02512 * 0.02562 * 6 5 4 28 28 H 1.08005 * 119.87053 * 180.23156 * 7 6 5 29 29 H 1.08003 * 119.84683 * 179.71883 * 8 7 6 30 30 H 0.97003 * 120.00701 * 179.97438 * 14 13 11 31 31 H 1.07991 * 120.12575 * 179.97438 * 19 9 8 32 32 H 1.07997 * 120.47201 * 359.97438 * 21 20 3 33 33 H 1.07993 * 120.73452 * 179.97438 * 22 21 20 34 34 H 1.08000 * 120.29882 * 180.26497 * 23 22 21 35 35 H 1.07994 * 119.54614 * 179.79352 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2489 -0.9412 -0.7078 5 6 2.5234 -2.0505 -1.3415 6 6 1.3271 -2.5182 -0.7840 7 6 0.6473 -3.5568 -1.3846 8 6 1.1476 -4.1465 -2.5313 9 6 2.3370 -3.6939 -3.0912 10 8 2.8218 -4.2772 -4.2172 11 6 4.0385 -3.8772 -4.6384 12 1 4.5453 -3.0677 -4.1344 13 6 4.6392 -4.5053 -5.7188 14 7 5.8261 -4.1148 -6.1302 15 14 3.7628 -5.9062 -6.5903 16 1 2.9277 -5.3596 -7.6900 17 1 4.7670 -6.8454 -7.1513 18 1 2.8973 -6.6268 -5.6226 19 6 3.0278 -2.6481 -2.5008 20 6 3.3078 1.0259 0.7701 21 6 2.6043 1.9886 1.4945 22 6 3.3098 2.9403 2.2087 23 6 4.6972 2.8965 2.1807 24 6 5.3304 1.9173 1.4380 25 7 4.6354 1.0220 0.7661 26 1 4.3224 -0.8732 -0.8038 27 1 0.9350 -2.0633 0.1137 28 1 -0.2773 -3.9140 -0.9556 29 1 0.6121 -4.9625 -2.9937 30 1 6.2465 -4.5544 -6.8858 31 1 3.9520 -2.2958 -2.9344 32 1 1.5243 1.9913 1.4969 33 1 2.7928 3.6983 2.7784 34 1 5.2765 3.6229 2.7313 35 1 6.4095 1.8831 1.4118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048638709.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:58 Heat of formation + Delta-G solvation = 72.501459 kcal Electronic energy + Delta-G solvation = -20840.095708 eV Core-core repulsion = 17576.133561 eV Total energy + Delta-G solvation = -3263.962147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28173 -40.88262 -39.08962 -37.63897 -35.46185 -34.42461 -33.34125 -32.65353 -31.06898 -29.92430 -27.25576 -25.93157 -24.50328 -23.58886 -23.18438 -22.03030 -19.87230 -19.54337 -18.34673 -17.19674 -17.07474 -16.98694 -16.65839 -16.18395 -15.74841 -15.73068 -15.42088 -15.31714 -14.98035 -14.49471 -14.43395 -14.22986 -14.05932 -13.92233 -13.63815 -13.53834 -13.24106 -12.74948 -12.66571 -12.47158 -12.33048 -11.97708 -11.43189 -11.40382 -10.91387 -10.81332 -10.45604 -10.13408 -9.34134 -8.96818 -8.48852 -6.22395 -0.85887 0.26495 0.39705 0.54249 0.91314 1.33757 1.37257 1.52714 1.52984 2.21946 2.28776 2.63047 2.72818 2.95670 3.02513 3.10155 3.24875 3.67301 3.90209 4.03576 4.06415 4.11488 4.15570 4.22630 4.32095 4.45020 4.65246 4.76016 4.80662 4.88287 4.93042 5.07810 5.23166 5.28057 5.31328 5.46316 5.55304 5.71957 5.75997 5.81443 6.10854 6.36147 6.84973 6.97918 7.55707 8.62100 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020428 B = 0.003578 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.324334 B = 7823.279535 C = 9015.491439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.278 3.722 3 C -0.045 4.045 4 C 0.039 3.961 5 C -0.057 4.057 6 C -0.169 4.169 7 C -0.073 4.073 8 C -0.170 4.170 9 C 0.121 3.879 10 O -0.240 6.240 11 C -0.402 4.402 12 H 0.087 0.913 13 C 0.014 3.986 14 N -0.919 5.919 15 Si 0.967 3.033 16 H -0.268 1.268 17 H -0.269 1.269 18 H -0.261 1.261 19 C -0.198 4.198 20 C 0.162 3.838 21 C -0.171 4.171 22 C -0.068 4.068 23 C -0.163 4.163 24 C 0.098 3.902 25 N -0.503 5.503 26 H 0.166 0.834 27 H 0.130 0.870 28 H 0.156 0.844 29 H 0.137 0.863 30 H 0.285 0.715 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.167 0.833 34 H 0.173 0.827 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 12.063 17.564 21.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.036 4.036 3 C -0.050 4.050 4 C 0.015 3.985 5 C -0.057 4.057 6 C -0.188 4.188 7 C -0.090 4.090 8 C -0.189 4.189 9 C 0.071 3.929 10 O -0.147 6.147 11 C -0.478 4.478 12 H 0.104 0.896 13 C -0.185 4.185 14 N -0.559 5.559 15 Si 0.789 3.211 16 H -0.193 1.193 17 H -0.193 1.193 18 H -0.185 1.185 19 C -0.217 4.217 20 C 0.026 3.974 21 C -0.191 4.191 22 C -0.094 4.094 23 C -0.183 4.183 24 C -0.060 4.060 25 N -0.213 5.213 26 H 0.183 0.817 27 H 0.147 0.853 28 H 0.174 0.826 29 H 0.154 0.846 30 H 0.095 0.905 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.185 0.815 34 H 0.190 0.810 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.683 11.271 16.820 20.781 hybrid contribution 0.185 0.129 -0.333 0.402 sum -4.498 11.400 16.487 20.543 Atomic orbital electron populations 1.81248 1.12222 1.09481 1.08902 1.25388 0.92579 0.92258 0.93385 1.16377 0.83436 0.99985 1.05169 1.22822 1.00959 0.88080 0.86647 1.18921 0.95325 0.96465 0.95005 1.21434 0.95193 1.00124 1.02076 1.21007 0.99685 0.94728 0.93626 1.20732 0.95752 1.03774 0.98611 1.19483 0.94242 0.92503 0.86636 1.83545 1.33750 1.60270 1.37156 1.20730 0.92138 1.19064 1.15836 0.89577 1.25227 0.95779 1.00583 0.96910 1.69717 1.15308 1.43330 1.27547 0.85270 0.78469 0.78562 0.78775 1.19285 1.19346 1.18542 1.21459 1.02610 0.99091 0.98547 1.19143 0.89749 0.93285 0.95230 1.22183 1.01454 0.96320 0.99181 1.21926 0.94772 0.96974 0.95712 1.22627 0.95343 1.00246 1.00047 1.23295 1.01593 0.89637 0.91456 1.67541 1.06814 1.26240 1.20700 0.81703 0.85283 0.82617 0.84553 0.90543 0.85711 0.85063 0.81535 0.80999 0.79842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -13.52 17.87 19.00 0.34 -13.18 16 2 C 0.28 7.87 10.24 88.33 0.90 8.77 16 3 C -0.05 -1.21 5.82 -19.94 -0.12 -1.33 16 4 C 0.04 1.14 9.40 24.04 0.23 1.36 16 5 C -0.06 -2.00 5.58 -20.18 -0.11 -2.11 16 6 C -0.17 -5.51 8.29 22.62 0.19 -5.32 16 7 C -0.07 -2.30 10.02 22.21 0.22 -2.08 16 8 C -0.17 -6.36 9.98 22.48 0.22 -6.13 16 9 C 0.12 5.48 6.64 22.53 0.15 5.63 16 10 O -0.24 -12.65 8.58 -22.86 -0.20 -12.84 16 11 C -0.40 -22.97 9.94 67.92 0.68 -22.29 16 12 H 0.09 5.10 5.43 -2.91 -0.02 5.09 16 13 C 0.01 0.80 5.49 84.83 0.47 1.26 16 14 N -0.92 -53.72 13.96 21.61 0.30 -53.42 16 15 Si 0.97 44.55 28.62 68.60 1.96 46.52 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 18 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 19 C -0.20 -8.41 8.91 22.73 0.20 -8.20 16 20 C 0.16 3.82 6.72 41.91 0.28 4.10 16 21 C -0.17 -3.23 9.47 22.60 0.21 -3.01 16 22 C -0.07 -0.87 10.16 22.44 0.23 -0.64 16 23 C -0.16 -1.81 10.11 22.42 0.23 -1.59 16 24 C 0.10 1.55 11.17 84.71 0.95 2.49 16 25 N -0.50 -11.61 9.38 -184.94 -1.74 -13.35 16 26 H 0.17 4.63 7.47 -2.92 -0.02 4.61 16 27 H 0.13 3.84 5.29 -2.91 -0.02 3.82 16 28 H 0.16 3.80 8.06 -2.91 -0.02 3.77 16 29 H 0.14 4.63 8.06 -2.91 -0.02 4.60 16 30 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.13 5.69 5.63 -2.91 -0.02 5.67 16 32 H 0.13 2.39 7.14 -2.91 -0.02 2.37 16 33 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 34 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 35 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -67.62 317.28 6.74 -60.88 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 1.14 Total: 14.49 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 4.93 Total: -29.09 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -1.09 Total: -79.96 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.20 Total: -12.84 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.96 Total: 46.52 kcal Total: -67.62 6.74 -60.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048638709.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.383 kcal (2) G-P(sol) polarization free energy of solvation -67.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds