Wall clock time and date at job start Tue Mar 31 2020 06:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50708 * 110.53374 * 2 1 4 4 C 1.38214 * 120.00753 * 119.30202 * 3 2 1 5 5 C 1.38224 * 120.02197 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05408 * 359.97438 * 5 4 3 7 7 C 1.38183 * 120.02323 * 359.97438 * 6 5 4 8 8 C 1.38437 * 120.01160 * 299.57728 * 3 2 1 9 9 F 1.35099 * 120.02745 * 0.02562 * 8 3 2 10 10 N 1.47304 * 110.60173 * 122.83061 * 2 1 3 11 11 C 1.34869 * 106.43925 * 118.72757 * 10 2 1 12 12 O 1.21539 * 123.72929 * 179.97438 * 11 10 2 13 13 N 1.33795 * 112.49788 * 359.86740 * 11 10 2 14 14 C 1.46505 * 124.17483 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.46603 * 270.03573 * 14 13 11 16 16 H 1.07995 * 120.00038 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99338 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00578 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99519 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46977 * 60.00541 * 19 17 15 21 21 H 1.48506 * 109.46968 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47230 * 300.00065 * 19 17 15 23 23 C 1.34768 * 111.64526 * 0.08353 * 13 11 10 24 24 O 1.21236 * 127.15584 * 180.02562 * 23 13 11 25 25 H 1.08993 * 109.47134 * 59.99517 * 1 2 3 26 26 H 1.08996 * 109.47305 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46910 * 299.99565 * 1 2 3 28 28 H 1.08000 * 119.99525 * 0.03989 * 4 3 2 29 29 H 1.08004 * 119.97833 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.98941 * 180.02562 * 6 5 4 31 31 H 1.08002 * 120.01017 * 180.02562 * 7 6 5 32 32 H 0.97004 * 126.69447 * 298.65619 * 10 2 1 33 33 H 1.08998 * 109.47186 * 30.03433 * 14 13 11 34 34 H 1.09000 * 109.46768 * 150.04115 * 14 13 11 35 35 H 0.96994 * 120.00426 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.8496 1.8532 1.0437 5 6 3.3342 3.1477 1.0443 6 6 3.0288 4.0019 0.0008 7 6 2.2390 3.5619 -1.0442 8 6 1.7474 2.2673 -1.0426 9 9 0.9693 1.8383 -2.0602 10 7 2.0483 -0.7475 1.1586 11 6 2.7646 -1.7758 0.6600 12 8 3.3358 -2.5975 1.3497 13 7 2.7744 -1.7918 -0.6778 14 6 3.4730 -2.7961 -1.4838 15 6 4.8788 -2.3288 -1.7605 16 1 5.2179 -1.3790 -1.3743 17 6 5.7322 -3.1144 -2.5058 18 7 5.3193 -4.2713 -2.9757 19 14 7.4749 -2.5355 -2.8482 20 1 8.1942 -2.3437 -1.5633 21 1 8.1831 -3.5535 -3.6653 22 1 7.4327 -1.2491 -3.5889 23 6 2.0632 -0.7692 -1.1924 24 8 1.8864 -0.5172 -2.3650 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.0895 1.1868 1.8591 29 1 3.9526 3.4921 1.8601 30 1 3.4083 5.0130 0.0021 31 1 2.0009 4.2292 -1.8594 32 1 1.9032 -0.5393 2.0948 33 1 3.5044 -3.7404 -0.9403 34 1 2.9447 -2.9369 -2.4267 35 1 5.9196 -4.8238 -3.5003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049443820.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:42 Heat of formation + Delta-G solvation = -54.309435 kcal Electronic energy + Delta-G solvation = -23906.744313 eV Core-core repulsion = 20206.514008 eV Total energy + Delta-G solvation = -3700.230305 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.79678 -41.98866 -39.02176 -37.88689 -35.94787 -34.74300 -32.69820 -31.41897 -30.78041 -29.37971 -27.87216 -24.82409 -23.49619 -23.02028 -22.54537 -20.93962 -19.81376 -17.92799 -17.32831 -16.89764 -16.52758 -16.26431 -15.70793 -15.37357 -15.24245 -14.93940 -14.79856 -14.30538 -14.00337 -13.83327 -13.49578 -13.43265 -12.93313 -12.50031 -12.46361 -12.29145 -12.19539 -11.75178 -11.53652 -11.20949 -11.06714 -10.74133 -10.45445 -10.07216 -9.91834 -9.69451 -9.32201 -9.05574 -8.70038 -8.58901 -8.50748 -6.13809 -4.19051 0.95855 1.08519 2.19411 2.86327 3.31434 3.33797 3.34413 3.38222 3.63456 3.72659 4.16027 4.25735 4.36661 4.42734 4.70039 4.72216 4.91598 5.11303 5.22166 5.23323 5.46857 5.49170 5.66501 5.81610 5.89972 5.95429 6.01423 6.15745 6.24920 6.57264 6.74195 7.01156 7.10388 7.20386 7.78881 7.91740 8.02415 8.06760 8.69534 8.84935 9.45656 10.95638 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.006020 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.745502 B = 4650.297796 C = 5092.399533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.162 3.838 3 C -0.126 4.126 4 C -0.072 4.072 5 C -0.133 4.133 6 C -0.087 4.087 7 C -0.157 4.157 8 C 0.126 3.874 9 F -0.119 7.119 10 N -0.733 5.733 11 C 0.703 3.297 12 O -0.536 6.536 13 N -0.554 5.554 14 C 0.249 3.751 15 C -0.535 4.535 16 H 0.059 0.941 17 C 0.067 3.933 18 N -0.891 5.891 19 Si 0.903 3.097 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.275 1.275 23 C 0.528 3.472 24 O -0.454 6.454 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.432 0.568 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.310 15.798 8.465 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.070 3.930 3 C -0.128 4.128 4 C -0.090 4.090 5 C -0.151 4.151 6 C -0.105 4.105 7 C -0.176 4.176 8 C 0.106 3.894 9 F -0.097 7.097 10 N -0.399 5.399 11 C 0.404 3.596 12 O -0.409 6.409 13 N -0.298 5.298 14 C 0.132 3.868 15 C -0.573 4.573 16 H 0.077 0.923 17 C -0.137 4.137 18 N -0.529 5.529 19 Si 0.730 3.270 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.200 1.200 23 C 0.312 3.688 24 O -0.323 6.323 25 H 0.105 0.895 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.153 0.847 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.275 0.725 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.996 15.154 7.924 19.323 hybrid contribution 0.887 0.298 0.028 0.937 sum -8.108 15.452 7.952 19.177 Atomic orbital electron populations 1.22024 0.89954 1.04059 1.04299 1.20074 0.96659 0.89404 0.86868 1.19633 1.02584 0.93955 0.96639 1.20899 0.94776 0.95959 0.97395 1.21172 1.00874 0.93615 0.99437 1.21057 0.96399 1.00025 0.92988 1.21153 1.00861 0.94588 1.00959 1.17460 0.93443 0.92869 0.85593 1.91580 1.71310 1.89936 1.56879 1.45714 1.56468 1.29661 1.08008 1.16037 0.79123 0.81798 0.82650 1.90964 1.47522 1.41106 1.61326 1.46818 1.47059 1.28802 1.07139 1.19628 0.91722 0.85390 0.90057 1.21201 0.96304 1.05532 1.34294 0.92301 1.24883 0.99049 0.94643 0.95081 1.69906 1.36641 1.11081 1.35250 0.86466 0.83546 0.78515 0.78446 1.19987 1.20894 1.20027 1.20324 0.78269 0.81023 0.89160 1.90768 1.56863 1.68466 1.16165 0.89503 0.90794 0.90641 0.84744 0.85103 0.84950 0.84422 0.72458 0.92695 0.92908 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.77 37.16 0.33 -1.41 16 2 C 0.16 2.46 1.03 -133.24 -0.14 2.33 16 3 C -0.13 -1.77 4.83 -104.55 -0.50 -2.27 16 4 C -0.07 -0.86 9.38 -39.60 -0.37 -1.23 16 5 C -0.13 -1.32 10.04 -39.58 -0.40 -1.72 16 6 C -0.09 -0.83 10.04 -39.59 -0.40 -1.23 16 7 C -0.16 -1.78 10.03 -39.51 -0.40 -2.17 16 8 C 0.13 1.79 6.82 -39.42 -0.27 1.52 16 9 F -0.12 -1.89 13.28 2.25 0.03 -1.86 16 10 N -0.73 -10.80 4.67 -53.93 -0.25 -11.05 16 11 C 0.70 14.54 8.63 -87.71 -0.76 13.78 16 12 O -0.54 -12.85 17.48 5.33 0.09 -12.76 16 13 N -0.55 -12.68 2.59 -121.92 -0.32 -13.00 16 14 C 0.25 6.74 5.45 -5.19 -0.03 6.71 16 15 C -0.53 -15.61 9.39 -34.44 -0.32 -15.93 16 16 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 17 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 18 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 19 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.53 10.93 6.77 -10.55 -0.07 10.86 16 24 O -0.45 -10.49 15.83 5.60 0.09 -10.40 16 25 H 0.09 1.08 6.44 -51.93 -0.33 0.74 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.13 1.43 6.65 -52.49 -0.35 1.08 16 29 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 30 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.43 4.70 8.45 -40.82 -0.34 4.36 16 33 H 0.06 1.57 7.86 -51.93 -0.41 1.16 16 34 H 0.05 1.49 8.00 -51.93 -0.42 1.07 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 308.62 15.07 4.65 4.65 Total: -1.00 -34.52 308.62 -6.92 -41.45 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -3.51 Total: 0.55 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: -3.42 Total: 11.07 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.17 Total: -49.84 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: 0.18 Total: -23.16 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.03 Total: -1.86 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.52 -6.92 -41.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049443820.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.863 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds