Wall clock time and date at job start Tue Mar 31 2020 06:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50708 * 110.53374 * 2 1 4 4 C 1.38214 * 120.00753 * 119.30202 * 3 2 1 5 5 C 1.38224 * 120.02197 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05408 * 359.97438 * 5 4 3 7 7 C 1.38183 * 120.02323 * 359.97438 * 6 5 4 8 8 C 1.38437 * 120.01160 * 299.57728 * 3 2 1 9 9 F 1.35099 * 120.02745 * 0.02562 * 8 3 2 10 10 N 1.47304 * 110.60173 * 122.83061 * 2 1 3 11 11 C 1.34869 * 106.43925 * 118.72757 * 10 2 1 12 12 O 1.21539 * 123.72929 * 179.97438 * 11 10 2 13 13 N 1.33795 * 112.49788 * 359.86740 * 11 10 2 14 14 C 1.46505 * 124.17483 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.46603 * 270.03573 * 14 13 11 16 16 H 1.07995 * 120.00038 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99338 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00578 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99519 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46977 * 60.00541 * 19 17 15 21 21 H 1.48506 * 109.46968 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47230 * 300.00065 * 19 17 15 23 23 C 1.34768 * 111.64526 * 0.08353 * 13 11 10 24 24 O 1.21236 * 127.15584 * 180.02562 * 23 13 11 25 25 H 1.08993 * 109.47134 * 59.99517 * 1 2 3 26 26 H 1.08996 * 109.47305 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46910 * 299.99565 * 1 2 3 28 28 H 1.08000 * 119.99525 * 0.03989 * 4 3 2 29 29 H 1.08004 * 119.97833 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.98941 * 180.02562 * 6 5 4 31 31 H 1.08002 * 120.01017 * 180.02562 * 7 6 5 32 32 H 0.97004 * 126.69447 * 298.65619 * 10 2 1 33 33 H 1.08998 * 109.47186 * 30.03433 * 14 13 11 34 34 H 1.09000 * 109.46768 * 150.04115 * 14 13 11 35 35 H 0.96994 * 120.00426 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.8496 1.8532 1.0437 5 6 3.3342 3.1477 1.0443 6 6 3.0288 4.0019 0.0008 7 6 2.2390 3.5619 -1.0442 8 6 1.7474 2.2673 -1.0426 9 9 0.9693 1.8383 -2.0602 10 7 2.0483 -0.7475 1.1586 11 6 2.7646 -1.7758 0.6600 12 8 3.3358 -2.5975 1.3497 13 7 2.7744 -1.7918 -0.6778 14 6 3.4730 -2.7961 -1.4838 15 6 4.8788 -2.3288 -1.7605 16 1 5.2179 -1.3790 -1.3743 17 6 5.7322 -3.1144 -2.5058 18 7 5.3193 -4.2713 -2.9757 19 14 7.4749 -2.5355 -2.8482 20 1 8.1942 -2.3437 -1.5633 21 1 8.1831 -3.5535 -3.6653 22 1 7.4327 -1.2491 -3.5889 23 6 2.0632 -0.7692 -1.1924 24 8 1.8864 -0.5172 -2.3650 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.0895 1.1868 1.8591 29 1 3.9526 3.4921 1.8601 30 1 3.4083 5.0130 0.0021 31 1 2.0009 4.2292 -1.8594 32 1 1.9032 -0.5393 2.0948 33 1 3.5044 -3.7404 -0.9403 34 1 2.9447 -2.9369 -2.4267 35 1 5.9196 -4.8238 -3.5003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049443820.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:42 Heat of formation + Delta-G solvation = -77.870495 kcal Electronic energy + Delta-G solvation = -23907.765997 eV Core-core repulsion = 20206.514008 eV Total energy + Delta-G solvation = -3701.251989 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.87464 -43.55010 -40.04760 -39.55337 -37.43742 -36.56033 -34.74963 -32.69490 -31.66080 -30.36499 -29.92999 -26.33170 -25.29423 -24.22534 -23.65402 -22.31006 -21.35577 -19.20550 -19.04687 -18.52958 -17.83796 -17.39623 -17.34986 -16.93482 -16.59133 -16.36135 -16.24759 -15.85824 -15.34525 -15.12656 -14.91504 -14.72991 -14.33935 -13.94447 -13.73865 -13.54716 -13.40733 -13.20984 -13.14439 -12.71678 -12.62280 -12.42200 -12.06746 -12.03098 -11.78776 -11.25884 -10.79248 -10.74067 -10.49217 -10.00116 -9.65539 -8.35873 -6.51261 0.02427 0.21355 0.59638 1.29520 1.35214 1.38036 1.46866 2.00687 2.10131 2.33315 2.57979 2.89572 2.97181 3.15616 3.32598 3.64741 3.84046 4.10704 4.19908 4.35637 4.37483 4.54411 4.59547 4.61701 4.81808 4.91545 4.97191 5.00432 5.06928 5.16001 5.31526 5.42400 5.52693 5.78896 5.80603 5.89492 6.21671 6.40722 6.54168 7.10009 7.22106 8.74026 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.006020 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.745502 B = 4650.297796 C = 5092.399533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.178 3.822 3 C -0.148 4.148 4 C -0.080 4.080 5 C -0.126 4.126 6 C -0.076 4.076 7 C -0.160 4.160 8 C 0.096 3.904 9 F -0.138 7.138 10 N -0.696 5.696 11 C 0.701 3.299 12 O -0.575 6.575 13 N -0.571 5.571 14 C 0.264 3.736 15 C -0.558 4.558 16 H 0.052 0.948 17 C 0.015 3.985 18 N -0.921 5.921 19 Si 0.973 3.027 20 H -0.266 1.266 21 H -0.270 1.270 22 H -0.268 1.268 23 C 0.516 3.484 24 O -0.488 6.488 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.145 0.855 29 H 0.164 0.836 30 H 0.171 0.829 31 H 0.155 0.845 32 H 0.454 0.546 33 H 0.030 0.970 34 H 0.029 0.971 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.532 18.808 10.030 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.087 3.913 3 C -0.151 4.151 4 C -0.099 4.099 5 C -0.144 4.144 6 C -0.093 4.093 7 C -0.178 4.178 8 C 0.076 3.924 9 F -0.117 7.117 10 N -0.363 5.363 11 C 0.402 3.598 12 O -0.451 6.451 13 N -0.315 5.315 14 C 0.145 3.855 15 C -0.596 4.596 16 H 0.070 0.930 17 C -0.185 4.185 18 N -0.559 5.559 19 Si 0.795 3.205 20 H -0.191 1.191 21 H -0.194 1.194 22 H -0.193 1.193 23 C 0.303 3.697 24 O -0.358 6.358 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.133 0.867 28 H 0.162 0.838 29 H 0.182 0.818 30 H 0.188 0.812 31 H 0.173 0.827 32 H 0.303 0.697 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.272 18.217 9.537 22.164 hybrid contribution 0.619 -0.564 -0.462 0.956 sum -7.652 17.653 9.076 21.273 Atomic orbital electron populations 1.22085 0.87162 1.04590 1.06046 1.20038 0.98416 0.89383 0.83451 1.19598 1.04544 0.92776 0.98135 1.21133 0.94351 0.97320 0.97056 1.21606 0.99966 0.92569 1.00227 1.21541 0.94606 1.01570 0.91612 1.21483 1.00576 0.93637 1.02146 1.17862 0.94669 0.94306 0.85577 1.91529 1.72043 1.90329 1.57787 1.45422 1.54372 1.27374 1.09136 1.16087 0.79407 0.82556 0.81701 1.90931 1.49480 1.42924 1.61805 1.46769 1.47572 1.28988 1.08168 1.19046 0.91451 0.85780 0.89264 1.21434 0.97467 1.05586 1.35146 0.92994 1.25858 1.03621 0.94616 0.94436 1.70014 1.38373 1.12056 1.35441 0.85393 0.77902 0.78445 0.78713 1.19115 1.19428 1.19303 1.21313 0.77375 0.80621 0.90430 1.90728 1.57876 1.69135 1.18089 0.89933 0.90875 0.86691 0.83776 0.81836 0.81204 0.82731 0.69749 0.95215 0.95337 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.77 71.98 0.63 -2.56 16 2 C 0.18 5.31 1.03 2.24 0.00 5.31 16 3 C -0.15 -3.95 4.83 -19.82 -0.10 -4.05 16 4 C -0.08 -1.68 9.38 22.26 0.21 -1.47 16 5 C -0.13 -1.96 10.04 22.27 0.22 -1.74 16 6 C -0.08 -1.12 10.04 22.26 0.22 -0.90 16 7 C -0.16 -3.22 10.03 22.31 0.22 -3.00 16 8 C 0.10 2.61 6.82 22.38 0.15 2.76 16 9 F -0.14 -4.46 13.28 44.97 0.60 -3.86 16 10 N -0.70 -19.75 4.67 -442.76 -2.07 -21.82 16 11 C 0.70 29.53 8.63 179.33 1.55 31.08 16 12 O -0.58 -28.27 17.48 -3.84 -0.07 -28.33 16 13 N -0.57 -27.26 2.59 -776.87 -2.01 -29.27 16 14 C 0.26 15.15 5.45 85.63 0.47 15.61 16 15 C -0.56 -33.73 9.39 25.60 0.24 -33.49 16 16 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 17 C 0.02 0.90 5.46 84.65 0.46 1.36 16 18 N -0.92 -56.22 13.29 21.45 0.28 -55.93 16 19 Si 0.97 45.61 29.54 68.60 2.03 47.64 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 C 0.52 22.06 6.77 87.94 0.60 22.65 16 24 O -0.49 -23.65 15.83 -2.89 -0.05 -23.70 16 25 H 0.08 2.01 6.44 -2.39 -0.02 1.99 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.11 1.71 8.14 -2.38 -0.02 1.70 16 28 H 0.14 2.62 6.65 -2.91 -0.02 2.61 16 29 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 30 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 31 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.45 8.81 8.45 -92.71 -0.78 8.03 16 33 H 0.03 1.82 7.86 -2.39 -0.02 1.80 16 34 H 0.03 1.74 8.00 -2.39 -0.02 1.72 16 35 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -79.34 308.62 3.96 -75.37 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 0.36 Total: 8.32 kcal Atomic # 6 Polarization: 26.69 SS G_CDS: 4.88 Total: 31.57 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -3.79 Total: -107.02 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -0.11 Total: -52.03 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.60 Total: -3.86 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -79.34 3.96 -75.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049443820.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.496 kcal (2) G-P(sol) polarization free energy of solvation -79.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds