Wall clock time and date at job start Tue Mar 31 2020 06:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50706 * 110.53658 * 2 1 4 4 C 1.38216 * 120.01546 * 242.83166 * 3 2 1 5 5 C 1.38217 * 120.02581 * 179.97438 * 4 3 2 6 6 C 1.38265 * 120.05343 * 0.02562 * 5 4 3 7 7 C 1.38181 * 120.02597 * 359.97438 * 6 5 4 8 8 C 1.38443 * 120.00897 * 62.80733 * 3 2 1 9 9 F 1.35099 * 120.02540 * 0.04305 * 8 3 2 10 10 N 1.47315 * 110.73429 * 237.08208 * 2 1 3 11 11 C 1.34526 * 106.61945 * 241.40923 * 10 2 1 12 12 O 1.21539 * 123.77297 * 179.97438 * 11 10 2 13 13 N 1.33794 * 112.46013 * 359.97438 * 11 10 2 14 14 C 1.46497 * 124.18076 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47019 * 270.03994 * 14 13 11 16 16 H 1.08000 * 119.99932 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99846 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00210 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99936 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46648 * 60.00390 * 19 17 15 21 21 H 1.48501 * 109.46857 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47206 * 300.00261 * 19 17 15 23 23 C 1.34769 * 111.64152 * 359.97438 * 13 11 10 24 24 O 1.21237 * 127.15845 * 179.97438 * 23 13 11 25 25 H 1.08996 * 109.47687 * 59.99884 * 1 2 3 26 26 H 1.09000 * 109.47125 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47108 * 299.99725 * 1 2 3 28 28 H 1.08000 * 119.98383 * 0.02562 * 4 3 2 29 29 H 1.07997 * 119.97708 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.99414 * 179.72576 * 6 5 4 31 31 H 1.08002 * 120.01473 * 179.97438 * 7 6 5 32 32 H 0.96994 * 126.68876 * 61.38053 * 10 2 1 33 33 H 1.09003 * 109.46652 * 30.03694 * 14 13 11 34 34 H 1.09001 * 109.47175 * 150.03452 * 14 13 11 35 35 H 0.96993 * 120.00376 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.8129 1.8670 -1.0648 5 6 3.2974 3.1615 -1.0652 6 6 3.0287 4.0018 -0.0006 7 6 2.2749 3.5484 1.0650 8 6 1.7885 2.2519 1.0663 9 9 1.0516 1.8073 2.1078 10 7 2.0515 -0.7487 -1.1565 11 6 2.7646 -1.7757 -0.6602 12 8 3.3358 -2.5974 -1.3499 13 7 2.7748 -1.7916 0.6776 14 6 3.4721 -2.7969 1.4835 15 6 2.5442 -3.9521 1.7583 16 1 1.5358 -3.9386 1.3717 17 6 2.9826 -5.0263 2.5033 18 7 4.2106 -5.0430 2.9736 19 14 1.8322 -6.4579 2.8446 20 1 1.4021 -7.0645 1.5591 21 1 2.5394 -7.4776 3.6603 22 1 0.6410 -5.9701 3.5849 23 6 2.0645 -0.7684 1.1923 24 8 1.8882 -0.5161 2.3649 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.0230 1.2117 -1.8971 29 1 3.8864 3.5169 -1.8978 30 1 3.4115 5.0117 0.0001 31 1 2.0655 4.2048 1.8967 32 1 1.9082 -0.5418 -2.0933 33 1 4.3469 -3.1547 0.9406 34 1 3.7872 -2.3514 2.4271 35 1 4.5192 -5.7988 3.4974 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049443822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:44 Heat of formation + Delta-G solvation = -54.030127 kcal Electronic energy + Delta-G solvation = -23785.940827 eV Core-core repulsion = 20085.722634 eV Total energy + Delta-G solvation = -3700.218193 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.81216 -42.00963 -39.07858 -37.88888 -35.95212 -34.74108 -32.69899 -31.45325 -30.83673 -29.39220 -27.87489 -24.80607 -23.54059 -23.05948 -22.56959 -20.94532 -19.81271 -17.96405 -17.31523 -16.93928 -16.46707 -16.29272 -15.82269 -15.46554 -15.14828 -14.95613 -14.79182 -14.35718 -14.03491 -13.73783 -13.49656 -13.46045 -12.97505 -12.48738 -12.47948 -12.28126 -12.25066 -11.79916 -11.53101 -11.16321 -11.13059 -10.73498 -10.44640 -10.06687 -9.91566 -9.70276 -9.32800 -9.11443 -8.75052 -8.58272 -8.50341 -6.13355 -4.18781 0.89902 1.01868 2.19536 2.86615 3.30240 3.32175 3.34730 3.38063 3.59929 3.75163 4.12830 4.22713 4.35005 4.42070 4.65355 4.69533 4.89693 5.05160 5.18006 5.22712 5.49275 5.50729 5.63830 5.80484 5.87975 5.93611 6.01310 6.10617 6.18699 6.57944 6.68272 7.01404 7.10019 7.20889 7.79044 7.92295 8.02699 8.07162 8.69982 8.85187 9.45956 10.96095 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024401 B = 0.004994 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.221565 B = 5604.901486 C = 5962.840685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.162 3.838 3 C -0.127 4.127 4 C -0.073 4.073 5 C -0.134 4.134 6 C -0.087 4.087 7 C -0.157 4.157 8 C 0.126 3.874 9 F -0.116 7.116 10 N -0.731 5.731 11 C 0.703 3.297 12 O -0.537 6.537 13 N -0.555 5.555 14 C 0.249 3.751 15 C -0.535 4.535 16 H 0.059 0.941 17 C 0.066 3.934 18 N -0.891 5.891 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.275 1.275 23 C 0.528 3.472 24 O -0.453 6.453 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.431 0.569 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.043 18.808 -8.446 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.070 3.930 3 C -0.129 4.129 4 C -0.092 4.092 5 C -0.152 4.152 6 C -0.105 4.105 7 C -0.176 4.176 8 C 0.106 3.894 9 F -0.095 7.095 10 N -0.397 5.397 11 C 0.404 3.596 12 O -0.410 6.410 13 N -0.299 5.299 14 C 0.132 3.868 15 C -0.573 4.573 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.529 5.529 19 Si 0.731 3.269 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.200 1.200 23 C 0.312 3.688 24 O -0.322 6.322 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.152 0.848 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.275 0.725 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.637 18.229 -7.901 20.401 hybrid contribution -0.725 -0.808 -0.037 1.086 sum -5.362 17.421 -7.938 19.881 Atomic orbital electron populations 1.22000 0.89848 1.04318 1.04111 1.20078 0.96835 0.89192 0.86881 1.19677 1.02851 0.94203 0.96159 1.20892 0.95058 0.95881 0.97319 1.21170 1.01026 0.93672 0.99302 1.21063 0.96585 1.00031 0.92822 1.21170 1.01072 0.94458 1.00896 1.17502 0.94148 0.92761 0.85018 1.91613 1.73518 1.89363 1.54967 1.45634 1.56279 1.29737 1.08063 1.15949 0.79467 0.81512 0.82663 1.90966 1.48002 1.40726 1.61310 1.46819 1.47801 1.28064 1.07169 1.19620 0.92791 0.84335 0.90036 1.21200 0.98897 1.02923 1.34319 0.92236 1.24892 0.95420 0.98308 0.95067 1.69910 1.16087 1.31633 1.35261 0.86448 0.80606 0.81374 0.78427 1.20003 1.20940 1.20002 1.20323 0.78340 0.81010 0.89164 1.90772 1.56141 1.69131 1.16154 0.90674 0.90550 0.89620 0.84754 0.85095 0.84942 0.84397 0.72511 0.92743 0.92987 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.80 37.15 0.33 -1.52 16 2 C 0.16 2.46 1.03 -133.24 -0.14 2.33 16 3 C -0.13 -1.68 4.82 -104.55 -0.50 -2.18 16 4 C -0.07 -0.79 9.37 -39.60 -0.37 -1.16 16 5 C -0.13 -1.17 10.04 -39.58 -0.40 -1.57 16 6 C -0.09 -0.74 10.04 -39.59 -0.40 -1.14 16 7 C -0.16 -1.64 10.03 -39.51 -0.40 -2.04 16 8 C 0.13 1.69 6.82 -39.42 -0.27 1.42 16 9 F -0.12 -1.83 13.21 2.25 0.03 -1.80 16 10 N -0.73 -10.80 4.71 -54.02 -0.25 -11.05 16 11 C 0.70 14.56 8.62 -88.02 -0.76 13.80 16 12 O -0.54 -12.89 17.48 5.33 0.09 -12.80 16 13 N -0.55 -12.71 2.59 -122.02 -0.32 -13.02 16 14 C 0.25 6.76 5.45 -5.19 -0.03 6.73 16 15 C -0.53 -15.52 9.39 -34.44 -0.32 -15.85 16 16 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 17 C 0.07 1.91 5.46 -17.82 -0.10 1.82 16 18 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 19 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.53 10.92 6.75 -10.55 -0.07 10.85 16 24 O -0.45 -10.47 15.60 5.59 0.09 -10.38 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.09 1.12 6.63 -51.93 -0.34 0.78 16 28 H 0.13 1.26 6.62 -52.49 -0.35 0.91 16 29 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 31 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.43 4.70 8.37 -40.82 -0.34 4.36 16 33 H 0.05 1.56 7.86 -51.93 -0.41 1.15 16 34 H 0.05 1.48 8.00 -51.93 -0.42 1.06 16 35 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 308.44 15.07 4.65 4.65 Total: -1.00 -34.42 308.44 -6.94 -41.36 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -3.52 Total: 0.30 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: -3.42 Total: 11.49 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.17 Total: -49.85 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.18 Total: -23.18 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.03 Total: -1.80 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.42 -6.94 -41.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049443822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.674 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds