Wall clock time and date at job start Tue Mar 31 2020 06:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50706 * 110.53658 * 2 1 4 4 C 1.38216 * 120.01546 * 242.83166 * 3 2 1 5 5 C 1.38217 * 120.02581 * 179.97438 * 4 3 2 6 6 C 1.38265 * 120.05343 * 0.02562 * 5 4 3 7 7 C 1.38181 * 120.02597 * 359.97438 * 6 5 4 8 8 C 1.38443 * 120.00897 * 62.80733 * 3 2 1 9 9 F 1.35099 * 120.02540 * 0.04305 * 8 3 2 10 10 N 1.47315 * 110.73429 * 237.08208 * 2 1 3 11 11 C 1.34526 * 106.61945 * 241.40923 * 10 2 1 12 12 O 1.21539 * 123.77297 * 179.97438 * 11 10 2 13 13 N 1.33794 * 112.46013 * 359.97438 * 11 10 2 14 14 C 1.46497 * 124.18076 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47019 * 270.03994 * 14 13 11 16 16 H 1.08000 * 119.99932 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99846 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00210 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99936 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46648 * 60.00390 * 19 17 15 21 21 H 1.48501 * 109.46857 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47206 * 300.00261 * 19 17 15 23 23 C 1.34769 * 111.64152 * 359.97438 * 13 11 10 24 24 O 1.21237 * 127.15845 * 179.97438 * 23 13 11 25 25 H 1.08996 * 109.47687 * 59.99884 * 1 2 3 26 26 H 1.09000 * 109.47125 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47108 * 299.99725 * 1 2 3 28 28 H 1.08000 * 119.98383 * 0.02562 * 4 3 2 29 29 H 1.07997 * 119.97708 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.99414 * 179.72576 * 6 5 4 31 31 H 1.08002 * 120.01473 * 179.97438 * 7 6 5 32 32 H 0.96994 * 126.68876 * 61.38053 * 10 2 1 33 33 H 1.09003 * 109.46652 * 30.03694 * 14 13 11 34 34 H 1.09001 * 109.47175 * 150.03452 * 14 13 11 35 35 H 0.96993 * 120.00376 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.8129 1.8670 -1.0648 5 6 3.2974 3.1615 -1.0652 6 6 3.0287 4.0018 -0.0006 7 6 2.2749 3.5484 1.0650 8 6 1.7885 2.2519 1.0663 9 9 1.0516 1.8073 2.1078 10 7 2.0515 -0.7487 -1.1565 11 6 2.7646 -1.7757 -0.6602 12 8 3.3358 -2.5974 -1.3499 13 7 2.7748 -1.7916 0.6776 14 6 3.4721 -2.7969 1.4835 15 6 2.5442 -3.9521 1.7583 16 1 1.5358 -3.9386 1.3717 17 6 2.9826 -5.0263 2.5033 18 7 4.2106 -5.0430 2.9736 19 14 1.8322 -6.4579 2.8446 20 1 1.4021 -7.0645 1.5591 21 1 2.5394 -7.4776 3.6603 22 1 0.6410 -5.9701 3.5849 23 6 2.0645 -0.7684 1.1923 24 8 1.8882 -0.5161 2.3649 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.0230 1.2117 -1.8971 29 1 3.8864 3.5169 -1.8978 30 1 3.4115 5.0117 0.0001 31 1 2.0655 4.2048 1.8967 32 1 1.9082 -0.5418 -2.0933 33 1 4.3469 -3.1547 0.9406 34 1 3.7872 -2.3514 2.4271 35 1 4.5192 -5.7988 3.4974 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049443822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:44 Heat of formation + Delta-G solvation = -77.614955 kcal Electronic energy + Delta-G solvation = -23786.963542 eV Core-core repulsion = 20085.722634 eV Total energy + Delta-G solvation = -3701.240908 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.85591 -43.57020 -40.05126 -39.55419 -37.43849 -36.55928 -34.74493 -32.71286 -31.65431 -30.36885 -29.93635 -26.30578 -25.33354 -24.22668 -23.64795 -22.29374 -21.35332 -19.26970 -18.93486 -18.55860 -17.76838 -17.47633 -17.37808 -16.92727 -16.59104 -16.33365 -16.23431 -15.82810 -15.32376 -15.11439 -14.91360 -14.72468 -14.32434 -13.98939 -13.73860 -13.55308 -13.42361 -13.20617 -13.13783 -12.70571 -12.61438 -12.41909 -12.04957 -12.03379 -11.78580 -11.25382 -10.79520 -10.73477 -10.49432 -10.00169 -9.65173 -8.35227 -6.50710 0.03245 0.21889 0.59300 1.30014 1.36295 1.39466 1.48138 2.01611 2.09234 2.34350 2.58532 2.89181 2.97812 3.15073 3.33360 3.64572 3.84720 4.11339 4.20433 4.36369 4.37909 4.52925 4.57634 4.62019 4.82033 4.91673 4.96631 5.00036 5.08087 5.16811 5.32570 5.43144 5.53451 5.78440 5.80703 5.90099 6.21930 6.40985 6.54788 7.10357 7.22602 8.74739 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024401 B = 0.004994 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.221565 B = 5604.901486 C = 5962.840685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.179 3.821 3 C -0.147 4.147 4 C -0.078 4.078 5 C -0.124 4.124 6 C -0.075 4.075 7 C -0.159 4.159 8 C 0.093 3.907 9 F -0.140 7.140 10 N -0.695 5.695 11 C 0.702 3.298 12 O -0.576 6.576 13 N -0.572 5.572 14 C 0.265 3.735 15 C -0.558 4.558 16 H 0.054 0.946 17 C 0.015 3.985 18 N -0.921 5.921 19 Si 0.975 3.025 20 H -0.267 1.267 21 H -0.271 1.271 22 H -0.267 1.267 23 C 0.515 3.485 24 O -0.487 6.487 25 H 0.116 0.884 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.147 0.853 29 H 0.166 0.834 30 H 0.171 0.829 31 H 0.154 0.846 32 H 0.454 0.546 33 H 0.029 0.971 34 H 0.026 0.974 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.903 20.755 -10.171 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.088 3.912 3 C -0.150 4.150 4 C -0.096 4.096 5 C -0.142 4.142 6 C -0.092 4.092 7 C -0.178 4.178 8 C 0.074 3.926 9 F -0.118 7.118 10 N -0.362 5.362 11 C 0.403 3.597 12 O -0.452 6.452 13 N -0.316 5.316 14 C 0.145 3.855 15 C -0.596 4.596 16 H 0.073 0.927 17 C -0.186 4.186 18 N -0.560 5.560 19 Si 0.798 3.202 20 H -0.192 1.192 21 H -0.195 1.195 22 H -0.192 1.192 23 C 0.302 3.698 24 O -0.358 6.358 25 H 0.135 0.865 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.165 0.835 29 H 0.184 0.816 30 H 0.188 0.812 31 H 0.172 0.828 32 H 0.302 0.698 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.531 20.244 -9.673 23.108 hybrid contribution -0.378 -1.260 0.497 1.407 sum -5.909 18.983 -9.176 21.897 Atomic orbital electron populations 1.22058 0.87656 1.04228 1.05987 1.20012 0.98161 0.89588 0.83440 1.19570 1.05032 0.92618 0.97742 1.21132 0.94417 0.97238 0.96830 1.21612 0.99864 0.92535 1.00157 1.21548 0.94657 1.01568 0.91450 1.21477 1.00755 0.93376 1.02185 1.17919 0.95548 0.94285 0.84876 1.91552 1.74351 1.89823 1.56089 1.45340 1.54148 1.27486 1.09197 1.15996 0.79754 0.82278 0.81705 1.90932 1.49914 1.42591 1.61787 1.46774 1.48371 1.28211 1.08208 1.19030 0.92314 0.84965 0.89171 1.21452 0.98959 1.04093 1.35135 0.92736 1.25872 0.97160 1.01120 0.94411 1.70020 1.17774 1.32684 1.35492 0.85359 0.78484 0.77729 0.78655 1.19206 1.19544 1.19213 1.21320 0.77451 0.80613 0.90453 1.90732 1.57111 1.69823 1.18087 0.86513 0.91566 0.90036 0.83530 0.81646 0.81201 0.82845 0.69775 0.95320 0.95554 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.80 71.98 0.63 -2.81 16 2 C 0.18 5.35 1.03 2.24 0.00 5.35 16 3 C -0.15 -3.71 4.82 -19.82 -0.10 -3.80 16 4 C -0.08 -1.44 9.37 22.26 0.21 -1.23 16 5 C -0.12 -1.62 10.04 22.27 0.22 -1.40 16 6 C -0.07 -0.95 10.04 22.26 0.22 -0.73 16 7 C -0.16 -2.95 10.03 22.31 0.22 -2.73 16 8 C 0.09 2.44 6.82 22.38 0.15 2.59 16 9 F -0.14 -4.50 13.21 44.97 0.59 -3.91 16 10 N -0.69 -19.75 4.71 -443.25 -2.09 -21.84 16 11 C 0.70 29.61 8.62 179.44 1.55 31.16 16 12 O -0.58 -28.35 17.48 -3.84 -0.07 -28.42 16 13 N -0.57 -27.38 2.59 -777.21 -2.01 -29.39 16 14 C 0.26 15.24 5.45 85.63 0.47 15.70 16 15 C -0.56 -33.68 9.39 25.60 0.24 -33.44 16 16 H 0.05 3.25 7.81 -2.91 -0.02 3.23 16 17 C 0.01 0.87 5.46 84.65 0.46 1.34 16 18 N -0.92 -56.37 13.29 21.45 0.28 -56.08 16 19 Si 0.97 45.69 29.54 68.60 2.03 47.72 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 23 C 0.51 22.10 6.75 87.94 0.59 22.70 16 24 O -0.49 -23.70 15.60 -2.90 -0.05 -23.75 16 25 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.08 2.11 6.63 -2.39 -0.02 2.09 16 28 H 0.15 2.25 6.62 -2.91 -0.02 2.23 16 29 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 30 H 0.17 0.93 8.06 -2.91 -0.02 0.90 16 31 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 32 H 0.45 8.77 8.37 -92.71 -0.78 8.00 16 33 H 0.03 1.76 7.86 -2.39 -0.02 1.75 16 34 H 0.03 1.62 8.00 -2.39 -0.02 1.60 16 35 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -79.73 308.44 3.95 -75.78 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 0.37 Total: 7.19 kcal Atomic # 6 Polarization: 27.82 SS G_CDS: 4.88 Total: 32.70 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -3.81 Total: -107.31 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -0.11 Total: -52.17 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.59 Total: -3.91 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -79.73 3.95 -75.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049443822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.836 kcal (2) G-P(sol) polarization free energy of solvation -79.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds