Wall clock time and date at job start Tue Mar 31 2020 06:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32775 * 124.71151 * 2 1 4 4 C 1.44424 * 113.08180 * 180.26568 * 3 2 1 5 5 C 1.47190 * 123.45754 * 179.73420 * 4 3 2 6 6 O 1.21650 * 119.99783 * 234.70658 * 5 4 3 7 7 N 1.34773 * 120.00314 * 54.71020 * 5 4 3 8 8 C 1.46500 * 120.00188 * 185.52758 * 7 5 4 9 9 C 1.50694 * 109.47127 * 90.00210 * 8 7 5 10 10 H 1.08001 * 120.00090 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00111 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99906 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99940 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46982 * 60.00247 * 13 11 9 15 15 H 1.48503 * 109.46985 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47313 * 299.99766 * 13 11 9 17 17 C 1.46500 * 119.99873 * 5.52762 * 7 5 4 18 18 C 1.53004 * 109.46939 * 94.93254 * 17 7 5 19 19 C 1.47208 * 109.46738 * 179.97438 * 18 17 7 20 20 N 5.69596 * 102.34189 * 69.71272 * 2 1 3 21 21 C 1.36013 * 113.08085 * 359.51268 * 4 3 2 22 22 C 1.50692 * 124.59321 * 180.19505 * 21 4 3 23 23 S 1.70450 * 110.81346 * 0.47444 * 21 4 3 24 24 H 1.09000 * 109.46882 * 89.99756 * 1 2 3 25 25 H 1.09001 * 109.47154 * 209.99637 * 1 2 3 26 26 H 1.08998 * 109.47070 * 329.99646 * 1 2 3 27 27 H 1.07998 * 123.45671 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.46909 * 209.99968 * 8 7 5 29 29 H 1.08998 * 109.46998 * 329.99891 * 8 7 5 30 30 H 0.96997 * 119.99658 * 180.02562 * 12 11 9 31 31 H 1.09000 * 109.47121 * 214.93402 * 17 7 5 32 32 H 1.09001 * 109.47239 * 334.93563 * 17 7 5 33 33 H 1.09000 * 109.47335 * 300.00017 * 18 17 7 34 34 H 1.09001 * 109.46903 * 60.00103 * 18 17 7 35 35 H 1.09000 * 109.47603 * 180.34386 * 22 21 4 36 36 H 1.09007 * 109.47242 * 300.34262 * 22 21 4 37 37 H 1.09005 * 109.47524 * 60.34242 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6776 0.8003 -0.0062 5 6 4.7200 1.8395 -0.0131 6 8 5.5764 1.8362 -0.8771 7 7 4.7257 2.7947 0.9377 8 6 5.6876 3.8971 0.8629 9 6 5.0870 5.0354 0.0791 10 1 4.0887 4.9465 -0.3234 11 6 5.8122 6.1902 -0.1251 12 7 7.0280 6.2983 0.3646 13 14 5.0679 7.6009 -1.0973 14 1 3.8309 8.0689 -0.4221 15 1 6.0429 8.7185 -1.1731 16 1 4.7382 7.1372 -2.4689 17 6 3.7700 2.7305 2.0462 18 6 4.4258 2.0436 3.2459 19 6 3.4657 1.9797 4.3599 20 7 2.7245 1.9293 5.2191 21 6 3.9477 -0.5327 -0.0001 22 6 5.3334 -1.1249 -0.0001 23 16 2.5064 -1.4427 -0.0001 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.8614 2.0940 0.0004 28 1 5.9296 4.2371 1.8698 29 1 6.5957 3.5539 0.3672 30 1 7.5380 7.1108 0.2212 31 1 3.4690 3.7402 2.3254 32 1 2.8927 2.1622 1.7371 33 1 4.7268 1.0339 2.9667 34 1 5.3031 2.6119 3.5550 35 1 5.2637 -2.2127 -0.0007 36 1 5.8696 -0.7948 -0.8899 37 1 5.8694 -0.7957 0.8901 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052818109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:28 Heat of formation + Delta-G solvation = 12.650045 kcal Electronic energy + Delta-G solvation = -20929.786986 eV Core-core repulsion = 17798.673438 eV Total energy + Delta-G solvation = -3131.113548 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.66592 -37.05338 -36.73764 -35.22456 -33.08287 -32.80257 -30.80891 -29.49747 -27.55566 -25.25800 -23.98240 -23.83848 -22.06711 -19.75742 -18.20227 -17.43727 -16.97426 -16.43373 -16.11810 -15.73650 -14.70325 -14.47715 -14.25360 -14.09107 -13.90059 -13.61547 -13.31294 -13.16300 -12.95806 -12.73580 -12.46999 -12.33240 -12.12686 -11.88408 -11.77527 -11.54157 -11.41849 -11.26304 -10.98670 -10.93186 -10.74538 -10.59759 -10.20484 -9.73613 -9.12439 -8.53555 -8.48211 -8.24720 -7.81624 -6.09589 -4.14499 0.98282 1.54596 1.95499 2.32117 2.78145 2.86899 3.29686 3.34500 3.36765 3.49689 3.74454 4.28891 4.41558 4.71008 4.92318 5.09008 5.14855 5.20354 5.25036 5.25536 5.38442 5.40604 5.54253 5.62508 5.66843 5.75919 5.88741 6.05799 6.07265 6.13454 6.18151 6.44002 6.95539 7.35523 7.42803 7.62666 7.86464 8.16120 8.25161 8.81215 8.96913 9.51038 10.98434 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013966 B = 0.005224 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.424552 B = 5358.939257 C = 5907.802637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.202 4.202 3 C -0.106 4.106 4 C -0.145 4.145 5 C 0.574 3.426 6 O -0.527 6.527 7 N -0.588 5.588 8 C 0.244 3.756 9 C -0.531 4.531 10 H 0.058 0.942 11 C 0.064 3.936 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.112 3.888 18 C -0.048 4.048 19 C 0.219 3.781 20 N -0.447 5.447 21 C -0.168 4.168 22 C -0.085 4.085 23 S 0.152 5.848 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.149 0.851 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.264 0.736 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.857 -14.611 1.921 17.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.319 4.319 3 C -0.135 4.135 4 C -0.162 4.162 5 C 0.359 3.641 6 O -0.404 6.404 7 N -0.319 5.319 8 C 0.125 3.875 9 C -0.570 4.570 10 H 0.076 0.924 11 C -0.139 4.139 12 N -0.532 5.532 13 Si 0.724 3.276 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.014 4.014 18 C -0.090 4.090 19 C -0.099 4.099 20 N -0.124 5.124 21 C -0.288 4.288 22 C -0.143 4.143 23 S 0.417 5.583 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.167 0.833 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.632 -16.066 2.756 18.933 hybrid contribution 0.269 2.544 -0.856 2.698 sum -9.363 -13.521 1.899 16.556 Atomic orbital electron populations 1.20313 0.87764 1.03068 1.02698 1.24196 1.00056 0.95944 1.11659 1.21127 0.90845 0.99446 1.02080 1.20349 0.94102 0.93317 1.08414 1.17536 0.83919 0.80540 0.82107 1.90787 1.38184 1.74631 1.36795 1.48113 1.35871 1.25550 1.22366 1.19377 0.88014 0.82248 0.97814 1.21379 1.01572 0.99333 1.34668 0.92412 1.24905 0.94767 0.98512 0.95681 1.69907 1.10012 1.28002 1.45231 0.86581 0.78832 0.81464 0.80703 1.20231 1.21161 1.20170 1.21453 0.92233 1.02134 0.85593 1.19842 0.95395 1.04584 0.89139 1.29089 0.93937 0.92737 0.94086 1.81181 1.10501 1.09347 1.11407 1.24210 1.01207 0.96361 1.06988 1.20385 0.90108 0.99501 1.04315 1.82796 0.93918 1.08882 1.72661 0.90849 0.91482 0.90501 0.83334 0.94602 0.93350 0.92589 0.89084 0.89803 0.87720 0.86570 0.91637 0.89292 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.35 36.00 0.37 -0.31 16 2 C -0.20 -2.33 6.44 -36.18 -0.23 -2.56 16 3 C -0.11 -1.44 7.99 -39.02 -0.31 -1.75 16 4 C -0.15 -2.28 4.90 -104.63 -0.51 -2.79 16 5 C 0.57 11.29 6.93 -12.63 -0.09 11.20 16 6 O -0.53 -12.60 16.14 5.23 0.08 -12.51 16 7 N -0.59 -11.20 2.46 -176.41 -0.43 -11.63 16 8 C 0.24 5.82 5.23 -5.20 -0.03 5.79 16 9 C -0.53 -14.17 9.39 -34.44 -0.32 -14.49 16 10 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 13 Si 0.90 21.18 29.54 -169.99 -5.02 16.15 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 C 0.11 1.63 5.28 -4.04 -0.02 1.61 16 18 C -0.05 -0.57 6.03 -29.51 -0.18 -0.75 16 19 C 0.22 2.88 15.43 -20.76 -0.32 2.56 16 20 N -0.45 -6.89 18.54 42.15 0.78 -6.11 16 21 C -0.17 -2.29 6.34 -35.11 -0.22 -2.51 16 22 C -0.08 -1.03 9.62 36.00 0.35 -0.68 16 23 S 0.15 1.66 22.93 -107.50 -2.46 -0.80 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.15 1.97 7.75 -52.49 -0.41 1.56 16 28 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 29 H 0.05 1.31 7.35 -51.93 -0.38 0.93 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 32 H 0.08 1.11 4.53 -51.93 -0.24 0.87 16 33 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 36 H 0.09 1.23 7.89 -51.93 -0.41 0.82 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 340.37 15.07 5.13 5.13 Total: -1.00 -32.11 340.37 -7.58 -39.70 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -4.78 Total: -2.22 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -1.62 Total: -3.04 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 1.08 Total: -42.40 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.46 Total: -0.80 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.11 -7.58 -39.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052818109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.345 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds