Wall clock time and date at job start Tue Mar 31 2020 06:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32775 * 124.71151 * 2 1 4 4 C 1.44424 * 113.08180 * 180.26568 * 3 2 1 5 5 C 1.47190 * 123.45754 * 179.73420 * 4 3 2 6 6 O 1.21650 * 119.99783 * 234.70658 * 5 4 3 7 7 N 1.34773 * 120.00314 * 54.71020 * 5 4 3 8 8 C 1.46500 * 120.00188 * 185.52758 * 7 5 4 9 9 C 1.50694 * 109.47127 * 90.00210 * 8 7 5 10 10 H 1.08001 * 120.00090 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00111 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99906 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99940 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46982 * 60.00247 * 13 11 9 15 15 H 1.48503 * 109.46985 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47313 * 299.99766 * 13 11 9 17 17 C 1.46500 * 119.99873 * 5.52762 * 7 5 4 18 18 C 1.53004 * 109.46939 * 94.93254 * 17 7 5 19 19 C 1.47208 * 109.46738 * 179.97438 * 18 17 7 20 20 N 5.69596 * 102.34189 * 69.71272 * 2 1 3 21 21 C 1.36013 * 113.08085 * 359.51268 * 4 3 2 22 22 C 1.50692 * 124.59321 * 180.19505 * 21 4 3 23 23 S 1.70450 * 110.81346 * 0.47444 * 21 4 3 24 24 H 1.09000 * 109.46882 * 89.99756 * 1 2 3 25 25 H 1.09001 * 109.47154 * 209.99637 * 1 2 3 26 26 H 1.08998 * 109.47070 * 329.99646 * 1 2 3 27 27 H 1.07998 * 123.45671 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.46909 * 209.99968 * 8 7 5 29 29 H 1.08998 * 109.46998 * 329.99891 * 8 7 5 30 30 H 0.96997 * 119.99658 * 180.02562 * 12 11 9 31 31 H 1.09000 * 109.47121 * 214.93402 * 17 7 5 32 32 H 1.09001 * 109.47239 * 334.93563 * 17 7 5 33 33 H 1.09000 * 109.47335 * 300.00017 * 18 17 7 34 34 H 1.09001 * 109.46903 * 60.00103 * 18 17 7 35 35 H 1.09000 * 109.47603 * 180.34386 * 22 21 4 36 36 H 1.09007 * 109.47242 * 300.34262 * 22 21 4 37 37 H 1.09005 * 109.47524 * 60.34242 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6776 0.8003 -0.0062 5 6 4.7200 1.8395 -0.0131 6 8 5.5764 1.8362 -0.8771 7 7 4.7257 2.7947 0.9377 8 6 5.6876 3.8971 0.8629 9 6 5.0870 5.0354 0.0791 10 1 4.0887 4.9465 -0.3234 11 6 5.8122 6.1902 -0.1251 12 7 7.0280 6.2983 0.3646 13 14 5.0679 7.6009 -1.0973 14 1 3.8309 8.0689 -0.4221 15 1 6.0429 8.7185 -1.1731 16 1 4.7382 7.1372 -2.4689 17 6 3.7700 2.7305 2.0462 18 6 4.4258 2.0436 3.2459 19 6 3.4657 1.9797 4.3599 20 7 2.7245 1.9293 5.2191 21 6 3.9477 -0.5327 -0.0001 22 6 5.3334 -1.1249 -0.0001 23 16 2.5064 -1.4427 -0.0001 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.8614 2.0940 0.0004 28 1 5.9296 4.2371 1.8698 29 1 6.5957 3.5539 0.3672 30 1 7.5380 7.1108 0.2212 31 1 3.4690 3.7402 2.3254 32 1 2.8927 2.1622 1.7371 33 1 4.7268 1.0339 2.9667 34 1 5.3031 2.6119 3.5550 35 1 5.2637 -2.2127 -0.0007 36 1 5.8696 -0.7948 -0.8899 37 1 5.8694 -0.7957 0.8901 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052818109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:27 Heat of formation + Delta-G solvation = -5.479327 kcal Electronic energy + Delta-G solvation = -20930.573134 eV Core-core repulsion = 17798.673438 eV Total energy + Delta-G solvation = -3131.899697 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.07912 -38.19674 -37.98587 -36.72212 -34.82263 -33.98209 -32.19259 -30.52206 -29.24504 -26.48698 -25.50492 -25.00298 -23.53111 -20.88498 -19.55844 -18.73305 -18.30850 -18.00841 -17.43752 -17.20374 -16.38167 -15.72799 -15.60175 -15.19377 -15.14387 -14.76762 -14.31589 -14.23709 -14.15465 -13.83670 -13.79218 -13.63037 -13.56519 -13.27292 -13.00242 -12.78614 -12.74790 -12.55611 -12.45889 -12.39540 -12.17377 -11.97005 -11.71715 -11.70310 -10.69493 -10.58741 -9.56738 -9.48735 -9.17354 -8.18313 -6.31070 -0.04875 0.60537 0.95202 1.18739 1.40339 1.43094 1.50092 1.65419 1.79294 2.08442 2.31368 2.46872 3.10479 3.14364 3.74446 3.81996 4.03068 4.09708 4.18214 4.31603 4.49476 4.53024 4.65682 4.69178 4.77664 4.80719 4.95157 4.99355 5.06718 5.15322 5.17329 5.23951 5.34244 5.45310 5.59114 5.86345 6.11567 6.54889 6.68852 6.78012 7.30055 7.45603 8.88322 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013966 B = 0.005224 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.424552 B = 5358.939257 C = 5907.802637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.195 4.195 3 C -0.128 4.128 4 C -0.170 4.170 5 C 0.573 3.427 6 O -0.583 6.583 7 N -0.588 5.588 8 C 0.259 3.741 9 C -0.544 4.544 10 H 0.053 0.947 11 C 0.014 3.986 12 N -0.924 5.924 13 Si 0.958 3.042 14 H -0.263 1.263 15 H -0.281 1.281 16 H -0.280 1.280 17 C 0.111 3.889 18 C -0.036 4.036 19 C 0.245 3.755 20 N -0.481 5.481 21 C -0.178 4.178 22 C -0.086 4.086 23 S 0.223 5.777 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.146 0.854 28 H 0.038 0.962 29 H 0.007 0.993 30 H 0.266 0.734 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.151 -16.101 2.258 19.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.312 4.312 3 C -0.156 4.156 4 C -0.187 4.187 5 C 0.360 3.640 6 O -0.464 6.464 7 N -0.317 5.317 8 C 0.138 3.862 9 C -0.583 4.583 10 H 0.071 0.929 11 C -0.186 4.186 12 N -0.564 5.564 13 Si 0.783 3.217 14 H -0.187 1.187 15 H -0.206 1.206 16 H -0.205 1.205 17 C -0.014 4.014 18 C -0.077 4.077 19 C -0.072 4.072 20 N -0.159 5.159 21 C -0.298 4.298 22 C -0.145 4.145 23 S 0.489 5.511 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.164 0.836 28 H 0.056 0.944 29 H 0.025 0.975 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.120 0.880 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.970 -17.570 3.132 21.490 hybrid contribution 0.955 2.888 -0.983 3.197 sum -11.015 -14.682 2.149 18.480 Atomic orbital electron populations 1.20464 0.85423 1.04366 1.03817 1.24634 1.01679 0.95731 1.09157 1.21042 0.89951 1.00229 1.04412 1.20051 0.93870 0.92899 1.11918 1.18142 0.83965 0.80922 0.80923 1.90743 1.40693 1.76148 1.38823 1.47978 1.35690 1.24312 1.23714 1.18867 0.87580 0.82912 0.96817 1.21700 1.01449 1.00309 1.34800 0.92866 1.25714 0.95168 1.01066 0.96637 1.70015 1.11163 1.28731 1.46445 0.85611 0.78599 0.78507 0.78974 1.18719 1.20576 1.20535 1.21613 0.92066 1.02612 0.85098 1.19738 0.94887 1.05536 0.87569 1.29020 0.93144 0.91557 0.93508 1.81214 1.11492 1.10669 1.12482 1.24527 1.03259 0.96296 1.05712 1.20426 0.89415 1.01354 1.03264 1.82566 0.91125 1.06915 1.70456 0.89710 0.89632 0.89817 0.83620 0.94447 0.97478 0.92483 0.89651 0.87959 0.85710 0.85992 0.88552 0.91658 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.35 71.24 0.74 -0.37 16 2 C -0.20 -3.92 6.44 24.51 0.16 -3.77 16 3 C -0.13 -3.31 7.99 22.67 0.18 -3.13 16 4 C -0.17 -5.28 4.90 -19.87 -0.10 -5.38 16 5 C 0.57 23.26 6.93 86.60 0.60 23.86 16 6 O -0.58 -29.45 16.14 -4.19 -0.07 -29.52 16 7 N -0.59 -22.97 2.46 -830.29 -2.04 -25.01 16 8 C 0.26 12.87 5.23 85.63 0.45 13.32 16 9 C -0.54 -29.81 9.39 25.60 0.24 -29.57 16 10 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 11 C 0.01 0.76 5.46 84.66 0.46 1.22 16 12 N -0.92 -53.76 13.29 21.45 0.28 -53.48 16 13 Si 0.96 43.78 29.54 68.60 2.03 45.80 16 14 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 17 C 0.11 3.17 5.28 86.38 0.46 3.63 16 18 C -0.04 -0.81 6.03 28.79 0.17 -0.64 16 19 C 0.25 6.04 15.43 89.45 1.38 7.42 16 20 N -0.48 -14.12 18.54 20.01 0.37 -13.75 16 21 C -0.18 -4.57 6.34 25.17 0.16 -4.41 16 22 C -0.09 -2.02 9.62 71.23 0.68 -1.34 16 23 S 0.22 4.13 22.93 -56.49 -1.30 2.83 16 24 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.15 3.75 7.75 -2.91 -0.02 3.73 16 28 H 0.04 1.82 8.07 -2.39 -0.02 1.80 16 29 H 0.01 0.41 7.35 -2.39 -0.02 0.39 16 30 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 31 H 0.09 2.55 8.11 -2.39 -0.02 2.53 16 32 H 0.10 2.60 4.53 -2.39 -0.01 2.59 16 33 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.10 1.59 8.11 -2.39 -0.02 1.57 16 36 H 0.06 1.86 7.89 -2.38 -0.02 1.84 16 37 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -71.84 340.37 5.95 -65.89 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 1.08 Total: 6.39 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 5.58 Total: 0.84 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -1.38 Total: -92.23 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.07 Total: -29.52 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.30 Total: 2.83 kcal Total: -71.84 5.95 -65.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052818109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.412 kcal (2) G-P(sol) polarization free energy of solvation -71.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds