Wall clock time and date at job start Tue Mar 31 2020 06:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46811 * 2 1 4 4 O 1.42897 * 109.47391 * 120.00153 * 2 1 3 5 5 C 1.35948 * 117.00032 * 277.06901 * 4 2 1 6 6 C 1.38705 * 120.02864 * 0.86181 * 5 4 2 7 7 C 1.38149 * 119.96797 * 179.97438 * 6 5 4 8 8 C 1.38452 * 120.03090 * 0.02562 * 7 6 5 9 9 F 1.35102 * 119.96930 * 179.97438 * 8 7 6 10 10 C 1.38449 * 120.06026 * 0.25119 * 8 7 6 11 11 C 1.38152 * 120.03039 * 359.49579 * 10 8 7 12 12 C 1.50696 * 109.46873 * 240.00180 * 2 1 3 13 13 O 1.21295 * 120.00147 * 259.53322 * 12 2 1 14 14 N 1.34779 * 119.99962 * 79.52858 * 12 2 1 15 15 C 1.37105 * 120.00154 * 185.06129 * 14 12 2 16 16 H 1.07998 * 119.99640 * 346.10923 * 15 14 12 17 17 C 1.38945 * 120.00165 * 166.10995 * 15 14 12 18 18 N 1.31416 * 119.99977 * 359.39119 * 17 15 14 19 19 Si 1.86802 * 120.00161 * 179.39215 * 17 15 14 20 20 H 1.48506 * 109.46910 * 59.99967 * 19 17 15 21 21 H 1.48493 * 109.47147 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47017 * 300.00069 * 19 17 15 23 23 C 1.46501 * 120.00159 * 5.06305 * 14 12 2 24 24 C 1.47200 * 109.47395 * 264.52931 * 23 14 12 25 25 N 4.22575 * 56.31622 * 296.76160 * 2 1 3 26 26 H 1.09001 * 109.47158 * 173.64035 * 1 2 3 27 27 H 1.09010 * 109.46790 * 293.63307 * 1 2 3 28 28 H 1.08999 * 109.47786 * 53.63551 * 1 2 3 29 29 H 1.08001 * 120.01889 * 0.02562 * 6 5 4 30 30 H 1.08008 * 119.98371 * 179.97438 * 7 6 5 31 31 H 1.08006 * 119.98580 * 179.72275 * 10 8 7 32 32 H 1.08001 * 120.01455 * 180.23379 * 11 10 8 33 33 H 0.96999 * 120.00035 * 180.02562 * 18 17 15 34 34 H 1.09003 * 109.46750 * 24.52982 * 23 14 12 35 35 H 1.08996 * 109.47152 * 144.52501 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0716 0.0516 2.3147 6 6 1.6681 1.3786 2.3213 7 6 1.7344 2.1143 3.4888 8 6 2.2039 1.5276 4.6517 9 9 2.2687 2.2484 5.7926 10 6 2.6124 0.2048 4.6452 11 6 2.5422 -0.5347 3.4804 12 6 2.0323 -0.7104 -1.2305 13 8 2.4143 -1.8590 -1.1542 14 7 2.0569 -0.0693 -2.4158 15 6 2.4150 -0.7455 -3.5535 16 1 2.8886 -1.7133 -3.4800 17 6 2.1686 -0.1855 -4.8011 18 7 1.5815 0.9867 -4.8908 19 14 2.6719 -1.0991 -6.3508 20 1 1.9746 -2.4093 -6.4015 21 1 2.3002 -0.2947 -7.5423 22 1 4.1403 -1.3199 -6.3403 23 6 1.7010 1.3499 -2.4886 24 6 0.2817 1.4817 -2.8560 25 7 -0.8136 1.5833 -3.1397 26 1 -0.3633 -1.0213 -0.1138 27 1 -0.3633 0.4120 0.9416 28 1 -0.3634 0.6093 -0.8275 29 1 1.3015 1.8364 1.4144 30 1 1.4207 3.1478 3.4941 31 1 2.9826 -0.2503 5.5520 32 1 2.8574 -1.5677 3.4765 33 1 1.4091 1.3775 -5.7617 34 1 1.8701 1.8171 -1.5184 35 1 2.3182 1.8411 -3.2408 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060859929.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:34 Heat of formation + Delta-G solvation = -37.969887 kcal Electronic energy + Delta-G solvation = -22894.379445 eV Core-core repulsion = 19194.857676 eV Total energy + Delta-G solvation = -3699.521769 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.86749 -40.43308 -38.91220 -37.09040 -35.86843 -34.38029 -32.46979 -31.52700 -30.82014 -29.19322 -27.62614 -25.51138 -24.00745 -23.11107 -22.03521 -19.54768 -18.51100 -18.06651 -17.31093 -16.84023 -16.38755 -16.10580 -15.68382 -15.25632 -15.01885 -14.75472 -14.30366 -13.83919 -13.71017 -13.54108 -13.37354 -13.11655 -12.92141 -12.56600 -12.24350 -12.13176 -11.81415 -11.65383 -11.58346 -11.26790 -11.24243 -10.88871 -10.80979 -10.54431 -10.51097 -10.32543 -9.40201 -9.28336 -8.72759 -8.28056 -8.07488 -6.56922 -4.18007 1.06543 1.16980 2.95056 3.05266 3.15384 3.20365 3.40578 3.51155 3.72654 3.91898 4.07030 4.24156 4.53489 4.65220 4.68221 4.79873 4.87765 5.05152 5.11582 5.17911 5.26265 5.44643 5.47590 5.74233 5.80571 5.86478 5.95367 6.03015 6.06594 6.20055 6.31872 6.63441 6.64540 7.31888 7.37713 7.71457 8.13334 8.71084 8.83708 9.01232 9.51021 10.41781 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028755 B = 0.003911 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.521935 B = 7157.602939 C = 7676.133489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.069 3.931 3 H 0.087 0.913 4 O -0.278 6.278 5 C 0.133 3.867 6 C -0.188 4.188 7 C -0.109 4.109 8 C 0.047 3.953 9 F -0.146 7.146 10 C -0.112 4.112 11 C -0.127 4.127 12 C 0.460 3.540 13 O -0.551 6.551 14 N -0.439 5.439 15 C -0.300 4.300 16 H 0.112 0.888 17 C 0.030 3.970 18 N -0.894 5.894 19 Si 0.941 3.059 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.270 1.270 23 C 0.216 3.784 24 C 0.257 3.743 25 N -0.483 5.483 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.141 0.859 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.276 0.724 34 H 0.072 0.928 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.084 4.410 12.832 13.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.009 3.991 3 H 0.105 0.895 4 O -0.190 6.190 5 C 0.086 3.914 6 C -0.207 4.207 7 C -0.128 4.128 8 C 0.027 3.973 9 F -0.125 7.125 10 C -0.131 4.131 11 C -0.145 4.145 12 C 0.247 3.753 13 O -0.432 6.432 14 N -0.161 5.161 15 C -0.427 4.427 16 H 0.130 0.870 17 C -0.171 4.171 18 N -0.536 5.536 19 Si 0.767 3.233 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.195 1.195 23 C 0.089 3.911 24 C -0.060 4.060 25 N -0.164 5.164 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.159 0.841 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.687 3.897 12.259 12.882 hybrid contribution 0.412 0.108 -0.723 0.839 sum 1.099 4.005 11.536 12.261 Atomic orbital electron populations 1.22322 0.93195 1.04519 1.03162 1.22416 0.95488 0.96683 0.84465 0.89503 1.86283 1.79859 1.37891 1.14945 1.19207 0.94613 0.90270 0.87311 1.21244 1.06099 0.93884 0.99448 1.20915 0.99958 1.00755 0.91176 1.17547 1.06312 0.90706 0.82692 1.91470 1.94761 1.77743 1.48485 1.20918 1.00707 0.92462 0.98992 1.20309 1.03255 1.01336 0.89629 1.19454 0.84875 0.87273 0.83720 1.90590 1.50300 1.17466 1.84841 1.43563 1.58624 1.07463 1.06471 1.19834 1.36804 1.04200 0.81860 0.87029 1.25325 0.95837 0.96302 0.99659 1.69590 1.41628 1.16327 1.26043 0.85731 0.79122 0.79073 0.79335 1.19764 1.20785 1.19542 1.19146 0.85860 0.84948 1.01135 1.29043 0.94231 0.92504 0.90265 1.80922 1.14335 1.08568 1.12561 0.90755 0.91352 0.90276 0.84115 0.84569 0.84277 0.84002 0.91238 0.91005 0.83529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 9.06 37.16 0.34 -2.42 16 2 C 0.07 1.18 1.93 -27.88 -0.05 1.12 16 3 H 0.09 1.22 4.25 -51.93 -0.22 1.00 16 4 O -0.28 -4.81 9.42 -38.68 -0.36 -5.17 16 5 C 0.13 1.86 6.52 -39.24 -0.26 1.61 16 6 C -0.19 -2.27 8.20 -39.44 -0.32 -2.59 16 7 C -0.11 -1.20 10.02 -39.54 -0.40 -1.59 16 8 C 0.05 0.54 7.30 -39.42 -0.29 0.25 16 9 F -0.15 -1.73 17.27 2.25 0.04 -1.69 16 10 C -0.11 -1.21 10.02 -39.54 -0.40 -1.61 16 11 C -0.13 -1.55 9.98 -39.44 -0.39 -1.94 16 12 C 0.46 10.14 6.88 -10.99 -0.08 10.06 16 13 O -0.55 -14.32 16.23 -13.56 -0.22 -14.54 16 14 N -0.44 -9.80 2.60 -117.93 -0.31 -10.10 16 15 C -0.30 -7.42 9.47 -14.93 -0.14 -7.57 16 16 H 0.11 2.91 7.23 -52.49 -0.38 2.53 16 17 C 0.03 0.71 5.36 -17.47 -0.09 0.61 16 18 N -0.89 -21.06 8.07 55.50 0.45 -20.61 16 19 Si 0.94 19.38 29.55 -169.99 -5.02 14.36 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 C 0.22 4.07 4.97 -6.83 -0.03 4.04 16 24 C 0.26 5.35 10.83 -20.76 -0.22 5.13 16 25 N -0.48 -10.86 18.43 42.15 0.78 -10.08 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.07 0.90 7.07 -51.92 -0.37 0.53 16 28 H 0.08 1.32 5.28 -51.93 -0.27 1.04 16 29 H 0.14 1.51 5.59 -52.49 -0.29 1.22 16 30 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 31 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.28 6.42 8.31 -40.82 -0.34 6.08 16 34 H 0.07 1.02 5.80 -51.93 -0.30 0.72 16 35 H 0.15 2.87 6.28 -51.93 -0.33 2.54 16 LS Contribution 305.54 15.07 4.60 4.60 Total: -1.00 -29.36 305.54 -5.37 -34.73 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -2.99 Total: 3.39 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -2.34 Total: 5.10 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.92 Total: -40.79 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.58 Total: -19.71 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.36 -5.37 -34.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060859929.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.236 kcal (2) G-P(sol) polarization free energy of solvation -29.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds