Wall clock time and date at job start Tue Mar 31 2020 06:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46811 * 2 1 4 4 O 1.42897 * 109.47391 * 120.00153 * 2 1 3 5 5 C 1.35948 * 117.00032 * 277.06901 * 4 2 1 6 6 C 1.38705 * 120.02864 * 0.86181 * 5 4 2 7 7 C 1.38149 * 119.96797 * 179.97438 * 6 5 4 8 8 C 1.38452 * 120.03090 * 0.02562 * 7 6 5 9 9 F 1.35102 * 119.96930 * 179.97438 * 8 7 6 10 10 C 1.38449 * 120.06026 * 0.25119 * 8 7 6 11 11 C 1.38152 * 120.03039 * 359.49579 * 10 8 7 12 12 C 1.50696 * 109.46873 * 240.00180 * 2 1 3 13 13 O 1.21295 * 120.00147 * 259.53322 * 12 2 1 14 14 N 1.34779 * 119.99962 * 79.52858 * 12 2 1 15 15 C 1.37105 * 120.00154 * 185.06129 * 14 12 2 16 16 H 1.07998 * 119.99640 * 346.10923 * 15 14 12 17 17 C 1.38945 * 120.00165 * 166.10995 * 15 14 12 18 18 N 1.31416 * 119.99977 * 359.39119 * 17 15 14 19 19 Si 1.86802 * 120.00161 * 179.39215 * 17 15 14 20 20 H 1.48506 * 109.46910 * 59.99967 * 19 17 15 21 21 H 1.48493 * 109.47147 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47017 * 300.00069 * 19 17 15 23 23 C 1.46501 * 120.00159 * 5.06305 * 14 12 2 24 24 C 1.47200 * 109.47395 * 264.52931 * 23 14 12 25 25 N 4.22575 * 56.31622 * 296.76160 * 2 1 3 26 26 H 1.09001 * 109.47158 * 173.64035 * 1 2 3 27 27 H 1.09010 * 109.46790 * 293.63307 * 1 2 3 28 28 H 1.08999 * 109.47786 * 53.63551 * 1 2 3 29 29 H 1.08001 * 120.01889 * 0.02562 * 6 5 4 30 30 H 1.08008 * 119.98371 * 179.97438 * 7 6 5 31 31 H 1.08006 * 119.98580 * 179.72275 * 10 8 7 32 32 H 1.08001 * 120.01455 * 180.23379 * 11 10 8 33 33 H 0.96999 * 120.00035 * 180.02562 * 18 17 15 34 34 H 1.09003 * 109.46750 * 24.52982 * 23 14 12 35 35 H 1.08996 * 109.47152 * 144.52501 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0716 0.0516 2.3147 6 6 1.6681 1.3786 2.3213 7 6 1.7344 2.1143 3.4888 8 6 2.2039 1.5276 4.6517 9 9 2.2687 2.2484 5.7926 10 6 2.6124 0.2048 4.6452 11 6 2.5422 -0.5347 3.4804 12 6 2.0323 -0.7104 -1.2305 13 8 2.4143 -1.8590 -1.1542 14 7 2.0569 -0.0693 -2.4158 15 6 2.4150 -0.7455 -3.5535 16 1 2.8886 -1.7133 -3.4800 17 6 2.1686 -0.1855 -4.8011 18 7 1.5815 0.9867 -4.8908 19 14 2.6719 -1.0991 -6.3508 20 1 1.9746 -2.4093 -6.4015 21 1 2.3002 -0.2947 -7.5423 22 1 4.1403 -1.3199 -6.3403 23 6 1.7010 1.3499 -2.4886 24 6 0.2817 1.4817 -2.8560 25 7 -0.8136 1.5833 -3.1397 26 1 -0.3633 -1.0213 -0.1138 27 1 -0.3633 0.4120 0.9416 28 1 -0.3634 0.6093 -0.8275 29 1 1.3015 1.8364 1.4144 30 1 1.4207 3.1478 3.4941 31 1 2.9826 -0.2503 5.5520 32 1 2.8574 -1.5677 3.4765 33 1 1.4091 1.3775 -5.7617 34 1 1.8701 1.8171 -1.5184 35 1 2.3182 1.8411 -3.2408 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060859929.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:33 Heat of formation + Delta-G solvation = -53.900515 kcal Electronic energy + Delta-G solvation = -22895.070249 eV Core-core repulsion = 19194.857676 eV Total energy + Delta-G solvation = -3700.212573 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.76723 -41.68145 -40.36043 -38.25356 -37.57526 -36.13115 -34.09369 -32.82797 -31.89848 -30.18214 -29.27028 -27.17941 -25.31766 -24.11301 -23.12865 -21.03517 -19.95679 -19.47169 -18.34251 -18.21778 -17.96832 -17.39685 -16.71285 -16.58490 -16.36972 -16.00791 -15.62778 -15.25081 -15.10422 -14.95698 -14.63729 -14.24953 -14.10201 -13.82354 -13.59885 -13.51189 -13.27370 -13.12696 -13.10593 -12.94423 -12.72302 -12.35050 -12.21125 -12.14567 -11.91524 -11.63826 -11.18281 -10.46129 -10.14050 -10.08464 -9.08169 -8.38176 -6.05815 0.19600 0.23639 1.35128 1.43295 1.51385 1.72061 1.74279 2.17409 2.26185 2.40946 2.59996 2.97459 3.07635 3.35821 3.50822 3.61651 3.74595 3.82071 3.88469 3.96061 4.18188 4.34804 4.43692 4.54101 4.57425 4.68519 4.95226 5.01973 5.08652 5.15586 5.17632 5.28775 5.41324 5.71633 5.89850 6.27451 6.42111 7.01994 7.07043 7.23907 7.76384 8.55969 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028755 B = 0.003911 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.521935 B = 7157.602939 C = 7676.133489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.082 3.918 3 H 0.122 0.878 4 O -0.305 6.305 5 C 0.105 3.895 6 C -0.186 4.186 7 C -0.105 4.105 8 C 0.041 3.959 9 F -0.147 7.147 10 C -0.106 4.106 11 C -0.134 4.134 12 C 0.451 3.549 13 O -0.603 6.603 14 N -0.447 5.447 15 C -0.330 4.330 16 H 0.086 0.914 17 C 0.007 3.993 18 N -0.897 5.897 19 Si 0.990 3.010 20 H -0.284 1.284 21 H -0.275 1.275 22 H -0.263 1.263 23 C 0.215 3.785 24 C 0.269 3.731 25 N -0.513 5.513 26 H 0.052 0.948 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.156 0.844 30 H 0.161 0.839 31 H 0.163 0.837 32 H 0.145 0.855 33 H 0.276 0.724 34 H 0.126 0.874 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.123 6.209 13.990 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.022 3.978 3 H 0.139 0.861 4 O -0.218 6.218 5 C 0.060 3.940 6 C -0.205 4.205 7 C -0.124 4.124 8 C 0.022 3.978 9 F -0.126 7.126 10 C -0.125 4.125 11 C -0.152 4.152 12 C 0.240 3.760 13 O -0.487 6.487 14 N -0.168 5.168 15 C -0.457 4.457 16 H 0.104 0.896 17 C -0.194 4.194 18 N -0.537 5.537 19 Si 0.815 3.185 20 H -0.210 1.210 21 H -0.200 1.200 22 H -0.188 1.188 23 C 0.089 3.911 24 C -0.047 4.047 25 N -0.195 5.195 26 H 0.071 0.929 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.174 0.826 30 H 0.179 0.821 31 H 0.181 0.819 32 H 0.163 0.837 33 H 0.087 0.913 34 H 0.143 0.857 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.721 5.741 13.429 14.623 hybrid contribution 0.422 -0.447 -0.977 1.154 sum 1.142 5.294 12.452 13.579 Atomic orbital electron populations 1.22258 0.92288 1.03281 1.04499 1.22209 0.95803 0.97203 0.82569 0.86108 1.86238 1.80695 1.39127 1.15778 1.19482 0.96620 0.91309 0.86606 1.21378 1.05658 0.92987 1.00454 1.21172 0.98980 1.01809 0.90412 1.17763 1.06202 0.90982 0.82882 1.91472 1.94757 1.77775 1.48615 1.21134 0.99811 0.92246 0.99285 1.20468 1.03247 1.01819 0.89702 1.20364 0.83590 0.87015 0.85078 1.90548 1.52336 1.19905 1.85907 1.43691 1.58291 1.08759 1.06073 1.19718 1.38410 1.04122 0.83499 0.89607 1.25854 0.95500 0.96861 1.01164 1.69693 1.41185 1.16471 1.26368 0.85000 0.79058 0.77579 0.76866 1.20994 1.19993 1.18756 1.19405 0.84462 0.83258 1.03936 1.29382 0.94452 0.91545 0.89355 1.80928 1.15357 1.09565 1.13643 0.92929 0.88195 0.90958 0.82618 0.82091 0.81937 0.83703 0.91285 0.85689 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.99 9.06 71.98 0.65 -4.33 16 2 C 0.08 2.66 1.93 29.85 0.06 2.72 16 3 H 0.12 3.01 4.25 -2.39 -0.01 3.00 16 4 O -0.31 -10.34 9.42 -74.70 -0.70 -11.05 16 5 C 0.11 2.77 6.52 22.49 0.15 2.92 16 6 C -0.19 -3.90 8.20 22.36 0.18 -3.72 16 7 C -0.11 -1.94 10.02 22.30 0.22 -1.72 16 8 C 0.04 0.82 7.30 22.37 0.16 0.99 16 9 F -0.15 -3.08 17.27 44.97 0.78 -2.30 16 10 C -0.11 -2.04 10.02 22.30 0.22 -1.81 16 11 C -0.13 -3.07 9.98 22.36 0.22 -2.85 16 12 C 0.45 20.01 6.88 87.66 0.60 20.61 16 13 O -0.60 -32.45 16.23 15.19 0.25 -32.20 16 14 N -0.45 -19.92 2.60 -645.41 -1.68 -21.60 16 15 C -0.33 -16.65 9.47 84.04 0.80 -15.85 16 16 H 0.09 4.68 7.23 -2.91 -0.02 4.66 16 17 C 0.01 0.32 5.36 84.92 0.45 0.77 16 18 N -0.90 -41.52 8.07 21.66 0.17 -41.35 16 19 Si 0.99 39.66 29.55 68.60 2.03 41.69 16 20 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 21 H -0.28 -10.62 7.11 99.48 0.71 -9.92 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 23 C 0.22 7.75 4.97 84.57 0.42 8.17 16 24 C 0.27 10.86 10.83 89.44 0.97 11.83 16 25 N -0.51 -22.56 18.43 20.01 0.37 -22.19 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.10 2.35 7.07 -2.38 -0.02 2.34 16 28 H 0.07 2.28 5.28 -2.39 -0.01 2.27 16 29 H 0.16 2.69 5.59 -2.91 -0.02 2.68 16 30 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 31 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 32 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 33 H 0.28 12.55 8.31 -92.71 -0.77 11.78 16 34 H 0.13 3.12 5.80 -2.39 -0.01 3.10 16 35 H 0.14 5.34 6.28 -2.39 -0.01 5.32 16 Total: -1.00 -64.90 305.54 7.48 -57.42 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 1.16 Total: 13.86 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 5.12 Total: 17.73 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -1.13 Total: -85.14 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -0.46 Total: -43.25 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -64.90 7.48 -57.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060859929.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.517 kcal (2) G-P(sol) polarization free energy of solvation -64.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds