Wall clock time and date at job start Tue Mar 31 2020 06:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46900 * 109.47293 * 2 1 4 4 C 1.46901 * 110.99868 * 163.79979 * 3 2 1 5 5 C 1.50707 * 109.46767 * 293.95025 * 4 3 2 6 6 H 1.07997 * 119.99810 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99637 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99701 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00285 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47416 * 90.00164 * 9 7 5 11 11 H 1.48501 * 109.47286 * 210.00232 * 9 7 5 12 12 H 1.48499 * 109.47098 * 329.99720 * 9 7 5 13 13 C 1.46903 * 110.99792 * 287.75083 * 3 2 1 14 14 N 1.46494 * 109.47156 * 155.07301 * 13 3 2 15 15 S 1.69293 * 125.66961 * 283.65411 * 14 13 3 16 16 C 1.76487 * 96.55511 * 179.97438 * 15 14 13 17 17 C 1.38984 * 132.91748 * 180.02562 * 16 15 14 18 18 C 1.37732 * 119.71276 * 180.32230 * 17 16 15 19 19 C 1.38898 * 119.97082 * 0.02562 * 18 17 16 20 20 C 1.36141 * 121.07062 * 0.02562 * 19 18 17 21 21 C 1.40566 * 106.27165 * 0.32122 * 16 15 14 22 22 C 1.33281 * 125.67726 * 103.96339 * 14 13 3 23 23 O 1.21899 * 121.67979 * 359.97438 * 22 14 13 24 24 H 1.08997 * 109.47498 * 185.33852 * 1 2 3 25 25 H 1.08999 * 109.47434 * 305.34541 * 1 2 3 26 26 H 1.09006 * 109.46988 * 65.33721 * 1 2 3 27 27 H 1.09004 * 109.47172 * 239.99329 * 2 1 3 28 28 H 1.09004 * 109.46497 * 119.99943 * 2 1 3 29 29 H 1.09000 * 109.47495 * 53.94852 * 4 3 2 30 30 H 1.09002 * 109.46745 * 173.95505 * 4 3 2 31 31 H 0.97006 * 120.00145 * 179.97438 * 8 7 5 32 32 H 1.09009 * 109.46819 * 275.06848 * 13 3 2 33 33 H 1.09001 * 109.47375 * 35.06732 * 13 3 2 34 34 H 1.08003 * 120.14277 * 0.36985 * 17 16 15 35 35 H 1.07993 * 120.01254 * 179.97438 * 18 17 16 36 36 H 1.07994 * 119.46173 * 179.97438 * 19 18 17 37 37 H 1.07999 * 119.78471 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4368 1.4422 0.3826 5 6 3.5874 1.0087 1.8181 6 1 2.7175 0.7192 2.3888 7 6 4.8358 0.9817 2.4027 8 7 4.9673 0.6030 3.6552 9 14 6.3405 1.4818 1.4153 10 1 6.5726 2.9402 1.5710 11 1 7.5265 0.7365 1.9086 12 1 6.1189 1.1661 -0.0188 13 6 1.8010 2.0207 -1.3062 14 7 1.7244 3.4736 -1.1355 15 16 0.3965 4.3270 -0.5236 16 6 1.1131 5.9347 -0.6534 17 6 0.6464 7.2067 -0.3436 18 6 1.4513 8.3020 -0.5657 19 6 2.7232 8.1320 -1.0975 20 6 3.1953 6.8933 -1.4075 21 6 2.3985 5.7506 -1.1916 22 6 2.6863 4.3440 -1.4414 23 8 3.7527 3.9818 -1.9077 24 1 -0.3634 -1.0232 0.0956 25 1 -0.3634 0.5945 0.8382 26 1 -0.3633 0.4288 -0.9340 27 1 1.8933 -0.5140 -0.8899 28 1 1.8932 -0.5139 0.8901 29 1 4.0139 0.7774 -0.2601 30 1 3.8023 2.4631 0.2711 31 1 5.8457 0.5836 4.0664 32 1 2.6285 1.7762 -1.9723 33 1 0.8683 1.6556 -1.7363 34 1 -0.3429 7.3356 0.0701 35 1 1.0935 9.2926 -0.3272 36 1 3.3472 8.9966 -1.2687 37 1 4.1874 6.7852 -1.8204 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064111191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:34 Heat of formation + Delta-G solvation = 27.047435 kcal Electronic energy + Delta-G solvation = -21083.008586 eV Core-core repulsion = 17952.519355 eV Total energy + Delta-G solvation = -3130.489230 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.38706 -38.47311 -37.03134 -34.39331 -32.60464 -31.68560 -31.10244 -30.19434 -27.80745 -25.31202 -23.40156 -22.75178 -22.23780 -20.75229 -20.19324 -18.62309 -17.21366 -16.78842 -16.38242 -15.76665 -15.64425 -14.96275 -14.76422 -14.24988 -14.03126 -13.97287 -13.55291 -13.26828 -12.85213 -12.76355 -12.48859 -12.37710 -11.96383 -11.62036 -11.42463 -11.23671 -10.95452 -10.82079 -10.66672 -10.48413 -10.22866 -9.90013 -9.85480 -9.47188 -9.28511 -9.14140 -8.57271 -7.71037 -7.15737 -6.06989 -4.04804 0.56610 0.95097 1.13587 1.73483 2.77282 3.32400 3.38728 3.46926 3.55785 3.67709 4.43681 4.56012 4.57934 4.76075 5.05833 5.12751 5.22839 5.26972 5.30722 5.48905 5.52885 5.58844 5.74548 5.77822 5.89567 5.90102 6.10371 6.15433 6.25929 6.51126 6.56685 6.62558 6.70402 6.88131 6.89739 7.50711 7.70953 7.85746 8.00136 8.58207 8.99441 9.55078 11.05439 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.006097 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.845319 B = 4591.008041 C = 5652.902433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.060 3.940 3 N -0.539 5.539 4 C 0.164 3.836 5 C -0.510 4.510 6 H 0.083 0.917 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.870 3.130 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.298 3.702 14 N -0.590 5.590 15 S 0.269 5.731 16 C -0.099 4.099 17 C -0.096 4.096 18 C -0.069 4.069 19 C -0.141 4.141 20 C -0.021 4.021 21 C -0.170 4.170 22 C 0.535 3.465 23 O -0.520 6.520 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.041 0.959 27 H 0.025 0.975 28 H 0.100 0.900 29 H -0.007 1.007 30 H 0.025 0.975 31 H 0.264 0.736 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.543 12.178 -10.850 19.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.067 4.067 3 N -0.265 5.265 4 C 0.039 3.961 5 C -0.549 4.549 6 H 0.101 0.899 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.697 3.303 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.085 3.915 14 N -0.413 5.413 15 S 0.414 5.586 16 C -0.216 4.216 17 C -0.121 4.121 18 C -0.090 4.090 19 C -0.162 4.162 20 C -0.041 4.041 21 C -0.181 4.181 22 C 0.321 3.679 23 O -0.398 6.398 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.118 0.882 29 H 0.010 0.990 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.079 11.248 -10.305 19.458 hybrid contribution 2.640 0.380 -1.203 2.926 sum -9.439 11.627 -11.508 18.887 Atomic orbital electron populations 1.21852 0.96001 1.01212 1.01442 1.21985 0.94459 0.88140 1.02159 1.61633 1.22834 1.17382 1.24620 1.20229 0.82169 0.96440 0.97311 1.20960 0.94879 1.44618 0.94397 0.89948 1.24836 0.98617 0.94740 0.94733 1.69887 1.23847 1.48006 1.11910 0.86930 0.83013 0.79192 0.81146 1.20154 1.21087 1.19100 1.21932 1.02164 0.74634 0.92804 1.49792 1.17791 1.10140 1.63565 1.84028 1.08880 0.89680 1.76023 1.23175 0.97915 0.99321 1.01232 1.20245 1.00736 0.89023 1.02079 1.21287 0.93565 0.98488 0.95693 1.20723 0.96723 0.97006 1.01746 1.20640 0.98756 0.90057 0.94663 1.20033 0.96146 0.93791 1.08156 1.17909 0.84462 0.85514 0.80023 1.90883 1.23032 1.80803 1.45079 0.92581 0.91663 0.93963 0.95641 0.88178 0.98973 0.95665 0.92624 0.90317 0.88875 0.84647 0.84676 0.85027 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.90 37.16 0.37 -1.73 16 2 C 0.06 1.09 5.50 -3.82 -0.02 1.07 16 3 N -0.54 -11.24 4.55 -239.97 -1.09 -12.33 16 4 C 0.16 4.20 3.64 -4.97 -0.02 4.19 16 5 C -0.51 -14.79 8.83 -34.44 -0.30 -15.09 16 6 H 0.08 2.55 7.50 -52.49 -0.39 2.15 16 7 C 0.07 2.17 5.47 -17.82 -0.10 2.08 16 8 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 9 Si 0.87 23.03 27.47 -169.99 -4.67 18.36 16 10 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.27 -7.01 6.54 56.52 0.37 -6.64 16 13 C 0.30 5.35 5.74 -63.32 -0.36 4.98 16 14 N -0.59 -10.78 3.20 -65.30 -0.21 -10.98 16 15 S 0.27 3.94 23.52 -107.50 -2.53 1.41 16 16 C -0.10 -1.40 6.66 -38.43 -0.26 -1.65 16 17 C -0.10 -1.01 10.07 -39.49 -0.40 -1.41 16 18 C -0.07 -0.63 10.06 -39.52 -0.40 -1.03 16 19 C -0.14 -1.44 9.92 -40.09 -0.40 -1.83 16 20 C -0.02 -0.28 10.00 -39.30 -0.39 -0.68 16 21 C -0.17 -2.80 6.09 -104.99 -0.64 -3.44 16 22 C 0.53 10.61 7.12 -13.93 -0.10 10.51 16 23 O -0.52 -11.99 16.95 5.01 0.08 -11.90 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.04 0.53 6.72 -51.93 -0.35 0.18 16 27 H 0.03 0.42 8.05 -51.93 -0.42 0.01 16 28 H 0.10 2.07 6.59 -51.93 -0.34 1.73 16 29 H -0.01 -0.19 7.18 -51.93 -0.37 -0.57 16 30 H 0.03 0.70 6.67 -51.93 -0.35 0.36 16 31 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 32 H 0.08 1.50 7.37 -51.92 -0.38 1.12 16 33 H 0.09 1.35 6.29 -51.93 -0.33 1.03 16 34 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 35 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 322.60 15.07 4.86 4.86 Total: -1.00 -34.83 322.60 -10.43 -45.26 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -4.63 Total: -3.49 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -3.02 Total: -4.04 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.53 Total: -50.48 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.08 Total: -11.90 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.67 Total: 18.36 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -2.53 Total: 1.41 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.83 -10.43 -45.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064111191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.309 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds