Wall clock time and date at job start Tue Mar 31 2020 06:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46900 * 109.47293 * 2 1 4 4 C 1.46901 * 110.99868 * 163.79979 * 3 2 1 5 5 C 1.50707 * 109.46767 * 293.95025 * 4 3 2 6 6 H 1.07997 * 119.99810 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99637 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99701 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00285 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47416 * 90.00164 * 9 7 5 11 11 H 1.48501 * 109.47286 * 210.00232 * 9 7 5 12 12 H 1.48499 * 109.47098 * 329.99720 * 9 7 5 13 13 C 1.46903 * 110.99792 * 287.75083 * 3 2 1 14 14 N 1.46494 * 109.47156 * 155.07301 * 13 3 2 15 15 S 1.69293 * 125.66961 * 283.65411 * 14 13 3 16 16 C 1.76487 * 96.55511 * 179.97438 * 15 14 13 17 17 C 1.38984 * 132.91748 * 180.02562 * 16 15 14 18 18 C 1.37732 * 119.71276 * 180.32230 * 17 16 15 19 19 C 1.38898 * 119.97082 * 0.02562 * 18 17 16 20 20 C 1.36141 * 121.07062 * 0.02562 * 19 18 17 21 21 C 1.40566 * 106.27165 * 0.32122 * 16 15 14 22 22 C 1.33281 * 125.67726 * 103.96339 * 14 13 3 23 23 O 1.21899 * 121.67979 * 359.97438 * 22 14 13 24 24 H 1.08997 * 109.47498 * 185.33852 * 1 2 3 25 25 H 1.08999 * 109.47434 * 305.34541 * 1 2 3 26 26 H 1.09006 * 109.46988 * 65.33721 * 1 2 3 27 27 H 1.09004 * 109.47172 * 239.99329 * 2 1 3 28 28 H 1.09004 * 109.46497 * 119.99943 * 2 1 3 29 29 H 1.09000 * 109.47495 * 53.94852 * 4 3 2 30 30 H 1.09002 * 109.46745 * 173.95505 * 4 3 2 31 31 H 0.97006 * 120.00145 * 179.97438 * 8 7 5 32 32 H 1.09009 * 109.46819 * 275.06848 * 13 3 2 33 33 H 1.09001 * 109.47375 * 35.06732 * 13 3 2 34 34 H 1.08003 * 120.14277 * 0.36985 * 17 16 15 35 35 H 1.07993 * 120.01254 * 179.97438 * 18 17 16 36 36 H 1.07994 * 119.46173 * 179.97438 * 19 18 17 37 37 H 1.07999 * 119.78471 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4368 1.4422 0.3826 5 6 3.5874 1.0087 1.8181 6 1 2.7175 0.7192 2.3888 7 6 4.8358 0.9817 2.4027 8 7 4.9673 0.6030 3.6552 9 14 6.3405 1.4818 1.4153 10 1 6.5726 2.9402 1.5710 11 1 7.5265 0.7365 1.9086 12 1 6.1189 1.1661 -0.0188 13 6 1.8010 2.0207 -1.3062 14 7 1.7244 3.4736 -1.1355 15 16 0.3965 4.3270 -0.5236 16 6 1.1131 5.9347 -0.6534 17 6 0.6464 7.2067 -0.3436 18 6 1.4513 8.3020 -0.5657 19 6 2.7232 8.1320 -1.0975 20 6 3.1953 6.8933 -1.4075 21 6 2.3985 5.7506 -1.1916 22 6 2.6863 4.3440 -1.4414 23 8 3.7527 3.9818 -1.9077 24 1 -0.3634 -1.0232 0.0956 25 1 -0.3634 0.5945 0.8382 26 1 -0.3633 0.4288 -0.9340 27 1 1.8933 -0.5140 -0.8899 28 1 1.8932 -0.5139 0.8901 29 1 4.0139 0.7774 -0.2601 30 1 3.8023 2.4631 0.2711 31 1 5.8457 0.5836 4.0664 32 1 2.6285 1.7762 -1.9723 33 1 0.8683 1.6556 -1.7363 34 1 -0.3429 7.3356 0.0701 35 1 1.0935 9.2926 -0.3272 36 1 3.3472 8.9966 -1.2687 37 1 4.1874 6.7852 -1.8204 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064111191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:33 Heat of formation + Delta-G solvation = 3.205790 kcal Electronic energy + Delta-G solvation = -21084.042437 eV Core-core repulsion = 17952.519355 eV Total energy + Delta-G solvation = -3131.523082 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.66921 -39.63248 -38.59569 -35.88257 -34.80521 -32.78462 -32.01544 -31.83824 -29.54668 -26.83340 -24.53292 -24.07626 -23.75252 -22.07784 -21.81371 -19.80619 -19.20236 -18.18274 -17.62275 -17.24349 -16.92884 -16.67642 -15.93059 -15.74301 -15.67921 -15.04229 -14.99439 -14.70998 -14.49886 -14.47798 -13.85714 -13.64385 -13.24675 -13.09127 -12.87836 -12.64101 -12.55848 -12.33250 -12.29749 -11.94086 -11.90194 -11.77931 -11.47058 -11.24207 -10.90761 -10.55666 -10.09660 -9.40476 -8.41352 -8.33459 -6.42564 -0.49785 -0.26706 0.23453 0.61580 1.17732 1.20641 1.32294 1.50585 2.19878 2.32256 2.65860 2.90612 3.01412 3.61974 3.80150 4.00359 4.01407 4.11372 4.15094 4.29506 4.37162 4.39169 4.50748 4.61445 4.73125 4.79549 4.91213 4.97182 5.00552 5.15128 5.20651 5.33818 5.36187 5.41993 5.44155 5.77950 5.82547 6.14419 6.37459 6.55612 6.62167 7.20518 8.74485 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.006097 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.845319 B = 4591.008041 C = 5652.902433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.057 3.943 3 N -0.547 5.547 4 C 0.183 3.817 5 C -0.510 4.510 6 H 0.054 0.946 7 C 0.025 3.975 8 N -0.934 5.934 9 Si 0.927 3.073 10 H -0.279 1.279 11 H -0.266 1.266 12 H -0.269 1.269 13 C 0.299 3.701 14 N -0.604 5.604 15 S 0.290 5.710 16 C -0.109 4.109 17 C -0.093 4.093 18 C -0.047 4.047 19 C -0.129 4.129 20 C -0.042 4.042 21 C -0.213 4.213 22 C 0.518 3.482 23 O -0.575 6.575 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.065 0.935 29 H -0.018 1.018 30 H 0.000 1.000 31 H 0.269 0.731 32 H 0.061 0.939 33 H 0.134 0.866 34 H 0.171 0.829 35 H 0.186 0.814 36 H 0.168 0.832 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.468 14.862 -11.489 23.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.070 4.070 3 N -0.273 5.273 4 C 0.056 3.944 5 C -0.548 4.548 6 H 0.072 0.928 7 C -0.174 4.174 8 N -0.574 5.574 9 Si 0.753 3.247 10 H -0.205 1.205 11 H -0.191 1.191 12 H -0.194 1.194 13 C 0.086 3.914 14 N -0.424 5.424 15 S 0.434 5.566 16 C -0.226 4.226 17 C -0.117 4.117 18 C -0.068 4.068 19 C -0.150 4.150 20 C -0.062 4.062 21 C -0.224 4.224 22 C 0.306 3.694 23 O -0.457 6.457 24 H 0.098 0.902 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.000 1.000 30 H 0.018 0.982 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.152 0.848 34 H 0.189 0.811 35 H 0.203 0.797 36 H 0.185 0.815 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.048 13.924 -10.941 22.604 hybrid contribution 3.115 -0.306 -0.976 3.279 sum -10.933 13.619 -11.917 21.143 Atomic orbital electron populations 1.21757 0.92411 1.02805 1.02243 1.22053 0.97313 0.86428 1.01190 1.61602 1.19553 1.19388 1.26751 1.19802 0.85294 0.94239 0.95090 1.21128 0.93964 1.43906 0.95812 0.92809 1.25533 1.01334 0.94923 0.95619 1.69983 1.24866 1.49281 1.13256 0.86024 0.80431 0.78675 0.79602 1.20469 1.19072 1.19398 1.22027 1.03470 0.74864 0.91051 1.49818 1.18981 1.10356 1.63246 1.83758 1.06709 0.90084 1.76006 1.23425 0.96958 1.00201 1.01971 1.20826 1.02409 0.87640 1.00835 1.21921 0.92210 1.00162 0.92516 1.21193 0.97708 0.96371 0.99682 1.20843 0.98612 0.90915 0.95869 1.20016 0.98342 0.92528 1.11539 1.18699 0.84026 0.87271 0.79410 1.90816 1.25150 1.81899 1.47863 0.90232 0.92781 0.91512 0.94128 0.91603 0.99996 0.98180 0.92142 0.92161 0.84813 0.81150 0.79691 0.81488 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 9.90 71.98 0.71 -2.89 16 2 C 0.06 2.09 5.50 86.30 0.47 2.57 16 3 N -0.55 -23.37 4.55 -913.12 -4.15 -27.52 16 4 C 0.18 9.75 3.64 85.56 0.31 10.06 16 5 C -0.51 -30.78 8.83 25.60 0.23 -30.55 16 6 H 0.05 3.49 7.50 -2.91 -0.02 3.47 16 7 C 0.02 1.52 5.47 84.65 0.46 1.99 16 8 N -0.93 -59.49 13.96 21.45 0.30 -59.19 16 9 Si 0.93 48.98 27.47 68.60 1.88 50.87 16 10 H -0.28 -14.78 7.11 99.48 0.71 -14.07 16 11 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.27 -14.23 6.54 99.48 0.65 -13.58 16 13 C 0.30 10.89 5.74 170.81 0.98 11.87 16 14 N -0.60 -22.56 3.20 -479.47 -1.53 -24.10 16 15 S 0.29 8.25 23.52 -56.49 -1.33 6.92 16 16 C -0.11 -2.89 6.66 23.02 0.15 -2.74 16 17 C -0.09 -1.57 10.07 22.33 0.22 -1.34 16 18 C -0.05 -0.60 10.06 22.31 0.22 -0.38 16 19 C -0.13 -2.17 9.92 21.94 0.22 -1.95 16 20 C -0.04 -1.12 10.00 22.45 0.22 -0.90 16 21 C -0.21 -7.11 6.09 -20.10 -0.12 -7.23 16 22 C 0.52 21.54 7.12 86.41 0.62 22.15 16 23 O -0.57 -28.37 16.95 -4.99 -0.08 -28.46 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.07 1.46 6.72 -2.38 -0.02 1.44 16 27 H 0.04 1.34 8.05 -2.39 -0.02 1.32 16 28 H 0.07 2.84 6.59 -2.38 -0.02 2.83 16 29 H -0.02 -0.96 7.18 -2.39 -0.02 -0.98 16 30 H 0.00 0.01 6.67 -2.39 -0.02 -0.01 16 31 H 0.27 16.01 8.31 -92.70 -0.77 15.23 16 32 H 0.06 2.41 7.37 -2.38 -0.02 2.39 16 33 H 0.13 3.70 6.29 -2.39 -0.02 3.68 16 34 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 35 H 0.19 0.63 8.06 -2.91 -0.02 0.61 16 36 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.12 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -81.80 322.60 0.81 -80.99 By element: Atomic # 1 Polarization: -1.19 SS G_CDS: 1.02 Total: -0.17 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 4.71 Total: 0.66 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -5.39 Total: -110.81 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.08 Total: -28.46 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 1.88 Total: 50.87 kcal Atomic # 16 Polarization: 8.25 SS G_CDS: -1.33 Total: 6.92 kcal Total: -81.80 0.81 -80.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064111191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.196 kcal (2) G-P(sol) polarization free energy of solvation -81.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds