Wall clock time and date at job start Tue Mar 31 2020 07:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 S 1.81404 * 109.46892 * 2 1 4 4 C 1.76205 * 102.99731 * 179.97438 * 3 2 1 5 5 C 1.39136 * 119.64348 * 179.97438 * 4 3 2 6 6 C 1.39570 * 118.91373 * 180.02562 * 5 4 3 7 7 C 1.48005 * 120.88600 * 179.97438 * 6 5 4 8 8 O 1.21561 * 119.99848 * 331.88263 * 7 6 5 9 9 N 1.34773 * 120.00175 * 151.87586 * 7 6 5 10 10 C 1.36800 * 119.99915 * 174.98759 * 9 7 6 11 11 H 1.08000 * 119.99773 * 224.45923 * 10 9 7 12 12 C 1.39098 * 120.00141 * 44.46313 * 10 9 7 13 13 N 1.31327 * 119.99802 * 18.91842 * 12 10 9 14 14 Si 1.86799 * 119.99988 * 198.92390 * 12 10 9 15 15 H 1.48507 * 109.46995 * 269.99552 * 14 12 10 16 16 H 1.48501 * 109.47394 * 29.99525 * 14 12 10 17 17 H 1.48501 * 109.47412 * 149.99792 * 14 12 10 18 18 C 1.46503 * 120.00116 * 354.99502 * 9 7 6 19 19 C 1.52995 * 117.49934 * 185.03851 * 18 9 7 20 20 C 1.52995 * 117.50102 * 116.41342 * 18 9 7 21 21 C 1.40136 * 118.22899 * 0.24998 * 6 5 4 22 22 C 1.37902 * 119.17682 * 359.50233 * 21 6 5 23 23 N 1.31935 * 121.01564 * 0.51085 * 22 21 6 24 24 H 1.08997 * 109.47184 * 300.00393 * 1 2 3 25 25 H 1.08996 * 109.47218 * 59.99922 * 1 2 3 26 26 H 1.08998 * 109.47224 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47099 * 240.00133 * 2 1 3 28 28 H 1.09002 * 109.47075 * 119.99677 * 2 1 3 29 29 H 1.07998 * 120.54784 * 0.02562 * 5 4 3 30 30 H 0.97000 * 119.99548 * 174.95900 * 13 12 10 31 31 H 1.08998 * 115.54220 * 330.74513 * 18 9 7 32 32 H 1.09001 * 117.49918 * 359.97438 * 19 18 9 33 33 H 1.09002 * 117.49859 * 145.01164 * 19 18 9 34 34 H 1.09003 * 117.49863 * 214.98025 * 20 18 9 35 35 H 1.09004 * 117.50048 * 359.97438 * 20 18 9 36 36 H 1.07998 * 120.40960 * 179.74660 * 21 6 5 37 37 H 1.08001 * 119.49754 * 180.25100 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.8855 1.5117 0.0008 5 6 4.7056 2.6357 0.0004 6 6 6.0903 2.4607 0.0005 7 6 7.0033 3.6256 -0.0005 8 8 6.6473 4.6764 -0.4974 9 7 8.2292 3.5215 0.5497 10 6 9.1105 4.5638 0.4586 11 1 10.1427 4.3772 0.2012 12 6 8.6774 5.8638 0.6977 13 7 7.5614 6.0732 1.3574 14 14 9.6832 7.3118 0.0802 15 1 10.6645 7.7123 1.1203 16 1 10.4052 6.9212 -1.1573 17 1 8.7795 8.4530 -0.2134 18 6 8.6179 2.2921 1.2452 19 6 9.9760 2.2782 1.9496 20 6 9.7763 1.4839 0.6572 21 6 6.5931 1.1527 -0.0045 22 6 5.7105 0.0931 0.0013 23 7 4.4066 0.2945 0.0012 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 4.2778 3.6273 0.0001 30 1 7.2967 6.9775 1.5879 31 1 7.8031 1.7381 1.7113 32 1 10.5805 3.1836 1.8951 33 1 10.0550 1.7150 2.8795 34 1 9.7238 0.3980 0.7369 35 1 10.2489 1.8666 -0.2474 36 1 7.6586 0.9767 -0.0087 37 1 6.0924 -0.9171 0.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065894563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:10 Heat of formation + Delta-G solvation = 45.258564 kcal Electronic energy + Delta-G solvation = -20888.985213 eV Core-core repulsion = 17759.285677 eV Total energy + Delta-G solvation = -3129.699537 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.99304 -38.28012 -36.22300 -33.12650 -32.89273 -32.12598 -31.04841 -30.72668 -25.71121 -24.16953 -23.71340 -22.71710 -21.83423 -21.25926 -19.95831 -17.89155 -16.44189 -16.09340 -15.96846 -15.55598 -15.04219 -14.93730 -14.56541 -14.34600 -13.96543 -13.78605 -13.58530 -13.13215 -12.83880 -12.46852 -12.13590 -11.91882 -11.59613 -11.32824 -11.23087 -11.00522 -10.96531 -10.84433 -10.30022 -10.27582 -10.08552 -9.93604 -9.53469 -9.42224 -9.24020 -8.86323 -8.18333 -7.37879 -7.18104 -6.23117 -3.99596 1.24156 1.40820 1.58654 2.37861 3.23424 3.33816 3.35742 3.75092 4.10550 4.28296 4.61545 4.75824 4.80059 4.87598 4.91415 5.05705 5.27076 5.33254 5.35616 5.46061 5.52662 5.56698 5.66513 5.67025 5.71768 5.84909 5.93162 6.04179 6.09205 6.20306 6.38112 6.61295 6.62616 6.82387 6.88575 7.49189 7.97068 8.12851 8.87704 8.98482 9.47559 10.09719 10.84194 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021667 B = 0.004566 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.950168 B = 6130.376197 C = 7168.104185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 S -0.088 6.088 4 C 0.110 3.890 5 C -0.104 4.104 6 C -0.035 4.035 7 C 0.504 3.496 8 O -0.519 6.519 9 N -0.406 5.406 10 C -0.351 4.351 11 H 0.084 0.916 12 C 0.073 3.927 13 N -0.818 5.818 14 Si 0.915 3.085 15 H -0.280 1.280 16 H -0.270 1.270 17 H -0.282 1.282 18 C 0.066 3.934 19 C -0.171 4.171 20 C -0.210 4.210 21 C -0.168 4.168 22 C 0.099 3.901 23 N -0.495 5.495 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.144 0.856 30 H 0.268 0.732 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.154 0.846 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.780 -12.649 -0.070 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.246 4.246 3 S 0.151 5.849 4 C -0.138 4.138 5 C -0.130 4.130 6 C -0.049 4.049 7 C 0.291 3.709 8 O -0.396 6.396 9 N -0.125 5.125 10 C -0.478 4.478 11 H 0.102 0.898 12 C -0.139 4.139 13 N -0.450 5.450 14 Si 0.742 3.258 15 H -0.207 1.207 16 H -0.194 1.194 17 H -0.208 1.208 18 C -0.040 4.040 19 C -0.209 4.209 20 C -0.249 4.249 21 C -0.191 4.191 22 C -0.060 4.060 23 N -0.209 5.209 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.162 0.838 30 H 0.078 0.922 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.171 0.829 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.457 -11.678 -0.309 13.859 hybrid contribution 1.900 0.194 -0.076 1.911 sum -5.558 -11.483 -0.385 12.763 Atomic orbital electron populations 1.21560 0.92515 1.02664 1.03026 1.23328 0.98913 0.95979 1.06395 1.85558 0.95107 1.11842 1.92401 1.22732 0.98133 0.91502 1.01416 1.21773 0.92604 0.99191 0.99471 1.20954 0.94060 0.95195 0.94651 1.17650 0.83014 0.86668 0.83549 1.90647 1.73858 1.28159 1.46962 1.42601 1.12649 1.11629 1.45637 1.18927 0.92999 0.84503 1.51377 0.89827 1.25322 0.95546 0.99050 0.94023 1.69810 1.21571 1.22165 1.31477 0.86158 0.79121 0.81172 0.79364 1.20664 1.19416 1.20759 1.22024 0.91304 0.91087 0.99601 1.23146 1.00636 1.02433 0.94676 1.23412 1.05564 0.97395 0.98563 1.22895 1.02715 0.92445 1.01008 1.22518 0.87988 0.99167 0.96366 1.67782 1.15407 1.22550 1.15148 0.91739 0.91763 0.90962 0.89315 0.89290 0.83837 0.92222 0.87284 0.87315 0.89565 0.89381 0.88727 0.82852 0.82677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.92 37.16 0.37 -0.83 16 2 C -0.10 -1.11 5.92 37.16 0.22 -0.89 16 3 S -0.09 -1.30 21.91 -107.50 -2.35 -3.65 16 4 C 0.11 1.95 7.00 -16.97 -0.12 1.83 16 5 C -0.10 -2.10 9.42 -38.75 -0.37 -2.47 16 6 C -0.04 -0.75 5.49 -104.68 -0.58 -1.32 16 7 C 0.50 12.97 6.89 -12.26 -0.08 12.89 16 8 O -0.52 -15.43 14.28 5.31 0.08 -15.35 16 9 N -0.41 -9.98 2.83 -108.75 -0.31 -10.29 16 10 C -0.35 -9.30 7.87 -15.02 -0.12 -9.42 16 11 H 0.08 2.11 7.35 -52.49 -0.39 1.72 16 12 C 0.07 2.01 4.36 -17.45 -0.08 1.93 16 13 N -0.82 -23.86 11.63 55.50 0.65 -23.21 16 14 Si 0.92 21.34 29.60 -169.99 -5.03 16.31 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 C 0.07 1.27 4.26 -67.93 -0.29 0.98 16 19 C -0.17 -2.93 9.80 -26.73 -0.26 -3.20 16 20 C -0.21 -3.31 9.04 -26.73 -0.24 -3.55 16 21 C -0.17 -2.87 7.70 -38.99 -0.30 -3.17 16 22 C 0.10 1.49 11.16 -17.63 -0.20 1.29 16 23 N -0.49 -8.17 9.40 -12.17 -0.11 -8.29 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.09 1.03 8.14 -51.92 -0.42 0.60 16 29 H 0.14 3.05 7.96 -52.49 -0.42 2.63 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.11 1.99 6.08 -51.93 -0.32 1.67 16 32 H 0.11 2.06 6.78 -51.93 -0.35 1.71 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.15 2.42 4.43 -52.49 -0.23 2.19 16 37 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 323.91 15.07 4.88 4.88 Total: -1.00 -32.06 323.91 -8.89 -40.94 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.64 Total: 4.58 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -2.04 Total: -5.92 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.22 Total: -41.79 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.08 Total: -15.35 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Atomic # 16 Polarization: -1.30 SS G_CDS: -2.35 Total: -3.65 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.06 -8.89 -40.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.203 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds