Wall clock time and date at job start Tue Mar 31 2020 07:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 S 1.81404 * 109.46892 * 2 1 4 4 C 1.76205 * 102.99731 * 179.97438 * 3 2 1 5 5 C 1.39136 * 119.64348 * 179.97438 * 4 3 2 6 6 C 1.39570 * 118.91373 * 180.02562 * 5 4 3 7 7 C 1.48005 * 120.88600 * 179.97438 * 6 5 4 8 8 O 1.21561 * 119.99848 * 331.88263 * 7 6 5 9 9 N 1.34773 * 120.00175 * 151.87586 * 7 6 5 10 10 C 1.36800 * 119.99915 * 174.98759 * 9 7 6 11 11 H 1.08000 * 119.99773 * 224.45923 * 10 9 7 12 12 C 1.39098 * 120.00141 * 44.46313 * 10 9 7 13 13 N 1.31327 * 119.99802 * 18.91842 * 12 10 9 14 14 Si 1.86799 * 119.99988 * 198.92390 * 12 10 9 15 15 H 1.48507 * 109.46995 * 269.99552 * 14 12 10 16 16 H 1.48501 * 109.47394 * 29.99525 * 14 12 10 17 17 H 1.48501 * 109.47412 * 149.99792 * 14 12 10 18 18 C 1.46503 * 120.00116 * 354.99502 * 9 7 6 19 19 C 1.52995 * 117.49934 * 185.03851 * 18 9 7 20 20 C 1.52995 * 117.50102 * 116.41342 * 18 9 7 21 21 C 1.40136 * 118.22899 * 0.24998 * 6 5 4 22 22 C 1.37902 * 119.17682 * 359.50233 * 21 6 5 23 23 N 1.31935 * 121.01564 * 0.51085 * 22 21 6 24 24 H 1.08997 * 109.47184 * 300.00393 * 1 2 3 25 25 H 1.08996 * 109.47218 * 59.99922 * 1 2 3 26 26 H 1.08998 * 109.47224 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47099 * 240.00133 * 2 1 3 28 28 H 1.09002 * 109.47075 * 119.99677 * 2 1 3 29 29 H 1.07998 * 120.54784 * 0.02562 * 5 4 3 30 30 H 0.97000 * 119.99548 * 174.95900 * 13 12 10 31 31 H 1.08998 * 115.54220 * 330.74513 * 18 9 7 32 32 H 1.09001 * 117.49918 * 359.97438 * 19 18 9 33 33 H 1.09002 * 117.49859 * 145.01164 * 19 18 9 34 34 H 1.09003 * 117.49863 * 214.98025 * 20 18 9 35 35 H 1.09004 * 117.50048 * 359.97438 * 20 18 9 36 36 H 1.07998 * 120.40960 * 179.74660 * 21 6 5 37 37 H 1.08001 * 119.49754 * 180.25100 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.8855 1.5117 0.0008 5 6 4.7056 2.6357 0.0004 6 6 6.0903 2.4607 0.0005 7 6 7.0033 3.6256 -0.0005 8 8 6.6473 4.6764 -0.4974 9 7 8.2292 3.5215 0.5497 10 6 9.1105 4.5638 0.4586 11 1 10.1427 4.3772 0.2012 12 6 8.6774 5.8638 0.6977 13 7 7.5614 6.0732 1.3574 14 14 9.6832 7.3118 0.0802 15 1 10.6645 7.7123 1.1203 16 1 10.4052 6.9212 -1.1573 17 1 8.7795 8.4530 -0.2134 18 6 8.6179 2.2921 1.2452 19 6 9.9760 2.2782 1.9496 20 6 9.7763 1.4839 0.6572 21 6 6.5931 1.1527 -0.0045 22 6 5.7105 0.0931 0.0013 23 7 4.4066 0.2945 0.0012 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 4.2778 3.6273 0.0001 30 1 7.2967 6.9775 1.5879 31 1 7.8031 1.7381 1.7113 32 1 10.5805 3.1836 1.8951 33 1 10.0550 1.7150 2.8795 34 1 9.7238 0.3980 0.7369 35 1 10.2489 1.8666 -0.2474 36 1 7.6586 0.9767 -0.0087 37 1 6.0924 -0.9171 0.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065894563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:09 Heat of formation + Delta-G solvation = 25.519940 kcal Electronic energy + Delta-G solvation = -20889.841144 eV Core-core repulsion = 17759.285677 eV Total energy + Delta-G solvation = -3130.555467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.51334 -39.90179 -37.92052 -34.97256 -33.92483 -33.54471 -32.68502 -32.29399 -27.58396 -25.48061 -25.12625 -23.84898 -23.19095 -22.79470 -21.67045 -19.51011 -18.12699 -17.57959 -17.40473 -17.06201 -16.56295 -16.14420 -15.97372 -15.81128 -15.47349 -15.26272 -14.93641 -14.71792 -14.50925 -13.72718 -13.37856 -13.25838 -13.06397 -12.91179 -12.76918 -12.45484 -12.36906 -12.26400 -12.15440 -11.66584 -11.37349 -11.31923 -10.95174 -10.86347 -10.78643 -10.74793 -10.03923 -9.09598 -8.60090 -8.27286 -6.07632 -0.20547 -0.01848 0.38597 1.30803 1.34462 1.42663 1.49882 2.13539 2.29171 2.72750 2.91874 3.07393 3.29142 3.55994 3.76887 3.95337 4.02701 4.06289 4.06424 4.09892 4.15941 4.29643 4.44167 4.57129 4.63396 4.77260 4.88956 4.92287 4.92786 5.01617 5.18959 5.24342 5.25289 5.42067 5.47051 5.51562 6.11911 6.63056 6.89882 7.06458 7.52602 8.17739 8.80135 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021667 B = 0.004566 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.950168 B = 6130.376197 C = 7168.104185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 S -0.104 6.104 4 C 0.111 3.889 5 C -0.130 4.130 6 C -0.059 4.059 7 C 0.488 3.512 8 O -0.580 6.580 9 N -0.418 5.418 10 C -0.362 4.362 11 H 0.091 0.909 12 C 0.020 3.980 13 N -0.863 5.863 14 Si 0.974 3.026 15 H -0.259 1.259 16 H -0.264 1.264 17 H -0.295 1.295 18 C 0.030 3.970 19 C -0.170 4.170 20 C -0.173 4.173 21 C -0.158 4.158 22 C 0.118 3.882 23 N -0.488 5.488 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.115 0.885 30 H 0.262 0.738 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.137 0.863 35 H 0.082 0.918 36 H 0.172 0.828 37 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.258 -16.666 0.060 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.234 4.234 3 S 0.135 5.865 4 C -0.137 4.137 5 C -0.157 4.157 6 C -0.072 4.072 7 C 0.277 3.723 8 O -0.462 6.462 9 N -0.136 5.136 10 C -0.489 4.489 11 H 0.109 0.891 12 C -0.187 4.187 13 N -0.497 5.497 14 Si 0.799 3.201 15 H -0.184 1.184 16 H -0.188 1.188 17 H -0.221 1.221 18 C -0.075 4.075 19 C -0.207 4.207 20 C -0.212 4.212 21 C -0.181 4.181 22 C -0.042 4.042 23 N -0.202 5.202 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.117 0.883 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.133 0.867 30 H 0.071 0.929 31 H 0.139 0.861 32 H 0.102 0.898 33 H 0.137 0.863 34 H 0.155 0.845 35 H 0.101 0.899 36 H 0.189 0.811 37 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -6.897 -15.734 -0.157 17.180 hybrid contribution 1.685 1.259 -0.123 2.107 sum -5.212 -14.474 -0.280 15.387 Atomic orbital electron populations 1.21594 0.90268 1.04375 1.03165 1.23477 1.00526 0.92794 1.06621 1.85694 0.93277 1.15769 1.91804 1.22887 0.99432 0.90990 1.00363 1.21628 0.93020 0.99074 1.01956 1.20666 0.93602 0.95472 0.97453 1.18418 0.83912 0.87318 0.82626 1.90581 1.75323 1.30795 1.49509 1.42776 1.12170 1.12981 1.45662 1.19239 0.93512 0.85444 1.50711 0.89104 1.26204 0.96530 1.01874 0.94103 1.69939 1.23865 1.22010 1.33896 0.85249 0.77819 0.77663 0.79411 1.18430 1.18833 1.22104 1.22280 0.92965 0.90195 1.02018 1.23220 0.98090 1.02354 0.97045 1.23474 1.01038 0.99527 0.97112 1.23039 1.03980 0.90849 1.00194 1.23349 0.86997 1.00762 0.93059 1.67961 1.16227 1.21327 1.14717 0.91653 0.91652 0.88265 0.89007 0.88987 0.86740 0.92913 0.86087 0.89803 0.86323 0.84526 0.89949 0.81128 0.77271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.92 71.98 0.71 -1.24 16 2 C -0.09 -1.74 5.92 71.98 0.43 -1.31 16 3 S -0.10 -3.05 21.91 -56.49 -1.24 -4.29 16 4 C 0.11 3.88 7.00 84.82 0.59 4.47 16 5 C -0.13 -5.52 9.42 22.81 0.21 -5.30 16 6 C -0.06 -2.57 5.49 -19.90 -0.11 -2.68 16 7 C 0.49 26.42 6.89 86.83 0.60 27.02 16 8 O -0.58 -37.07 14.28 -3.91 -0.06 -37.12 16 9 N -0.42 -21.06 2.83 -616.24 -1.74 -22.80 16 10 C -0.36 -19.74 7.87 84.12 0.66 -19.08 16 11 H 0.09 4.66 7.35 -2.91 -0.02 4.64 16 12 C 0.02 1.17 4.36 84.97 0.37 1.54 16 13 N -0.86 -53.38 11.63 21.69 0.25 -53.13 16 14 Si 0.97 45.46 29.60 68.60 2.03 47.49 16 15 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 16 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 18 C 0.03 1.11 4.26 44.99 0.19 1.30 16 19 C -0.17 -5.43 9.80 30.59 0.30 -5.13 16 20 C -0.17 -4.83 9.04 30.59 0.28 -4.55 16 21 C -0.16 -5.06 7.70 22.65 0.17 -4.88 16 22 C 0.12 3.07 11.16 84.60 0.94 4.01 16 23 N -0.49 -14.78 9.40 -192.41 -1.81 -16.59 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.10 0.97 8.14 -2.39 -0.02 0.96 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.11 5.41 7.96 -2.91 -0.02 5.38 16 30 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 31 H 0.12 4.18 6.08 -2.39 -0.01 4.17 16 32 H 0.08 3.13 6.78 -2.39 -0.02 3.11 16 33 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.17 4.79 4.43 -2.91 -0.01 4.78 16 37 H 0.21 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -76.63 323.91 3.88 -72.75 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 1.08 Total: 19.51 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 5.36 Total: -5.82 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -3.30 Total: -92.52 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -0.06 Total: -37.12 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -1.24 Total: -4.29 kcal Total: -76.63 3.88 -72.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.269 kcal (2) G-P(sol) polarization free energy of solvation -76.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds