Wall clock time and date at job start Tue Mar 31 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86796 * 119.99818 * 2 1 4 4 H 1.48501 * 109.47091 * 269.99784 * 3 2 1 5 5 H 1.48500 * 109.47347 * 29.99714 * 3 2 1 6 6 H 1.48497 * 109.47137 * 150.00080 * 3 2 1 7 7 C 1.38947 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99986 * 197.99139 * 7 2 1 9 9 N 1.37101 * 119.99829 * 17.99039 * 7 2 1 10 10 C 1.34767 * 119.99985 * 44.48916 * 9 7 2 11 11 O 1.21288 * 120.00331 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99963 * 180.02562 * 10 9 7 13 13 S 1.81393 * 109.47234 * 179.97438 * 12 10 9 14 14 C 1.81403 * 102.99968 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.47186 * 179.97438 * 14 13 12 16 16 C 1.38673 * 120.42039 * 269.72373 * 15 14 13 17 17 C 1.38624 * 118.42335 * 179.78495 * 16 15 14 18 18 C 1.38230 * 119.15970 * 0.50864 * 17 16 15 19 19 N 1.31856 * 120.76340 * 359.72563 * 18 17 16 20 20 C 1.31888 * 121.72179 * 0.02562 * 19 18 17 21 21 C 1.46499 * 119.99651 * 224.48524 * 9 7 2 22 22 C 1.53001 * 117.50166 * 3.27375 * 21 9 7 23 23 C 1.53010 * 117.49900 * 294.61598 * 21 9 7 24 24 H 0.97003 * 120.00062 * 354.96759 * 1 2 3 25 25 H 1.08992 * 109.47196 * 59.99344 * 12 10 9 26 26 H 1.09005 * 109.46645 * 299.99785 * 12 10 9 27 27 H 1.08994 * 109.47255 * 299.99629 * 14 13 12 28 28 H 1.09001 * 109.47031 * 59.99900 * 14 13 12 29 29 H 1.08004 * 120.78652 * 0.02562 * 16 15 14 30 30 H 1.07997 * 120.42471 * 180.22125 * 17 16 15 31 31 H 1.07997 * 119.62050 * 179.75446 * 18 17 16 32 32 H 1.08004 * 119.61579 * 179.97438 * 20 19 18 33 33 H 1.08997 * 115.55114 * 148.94568 * 21 9 7 34 34 H 1.09000 * 117.49541 * 0.02562 * 22 21 9 35 35 H 1.08998 * 117.50304 * 145.02175 * 22 21 9 36 36 H 1.09003 * 117.49569 * 214.98274 * 23 21 9 37 37 H 1.09000 * 117.49698 * 359.97343 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0493 -1.2261 0.2894 9 7 1.3736 -2.3618 -0.3657 10 6 0.5767 -2.3787 -1.4524 11 8 0.4211 -1.3691 -2.1062 12 6 -0.1221 -3.6520 -1.8546 13 16 -1.1129 -3.3533 -3.3443 14 6 -1.8630 -4.9731 -3.6670 15 6 -2.7322 -4.8886 -4.8953 16 6 -4.0742 -4.5573 -4.7844 17 6 -4.8342 -4.4870 -5.9415 18 6 -4.2359 -4.7578 -7.1578 19 7 -2.9577 -5.0744 -7.2251 20 6 -2.2033 -5.1460 -6.1456 21 6 1.5611 -3.5812 0.4243 22 6 2.4160 -3.4791 1.6892 23 6 2.9617 -4.1966 0.4521 24 1 -0.4850 0.8368 0.0737 25 1 -0.7738 -3.9801 -1.0449 26 1 0.6195 -4.4241 -2.0597 27 1 -1.0778 -5.7118 -3.8274 28 1 -2.4709 -5.2688 -2.8119 29 1 -4.5158 -4.3552 -3.8197 30 1 -5.8817 -4.2284 -5.8930 31 1 -4.8220 -4.7090 -8.0636 32 1 -1.1600 -5.4089 -6.2400 33 1 0.7112 -4.2633 0.4450 34 1 2.8384 -2.5045 1.9337 35 1 2.1287 -4.0942 2.5419 36 1 3.0331 -5.2836 0.4913 37 1 3.7435 -3.6944 -0.1179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065894610.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:19 Heat of formation + Delta-G solvation = 22.460341 kcal Electronic energy + Delta-G solvation = -20139.265018 eV Core-core repulsion = 17008.576876 eV Total energy + Delta-G solvation = -3130.688142 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.04992 -40.35653 -37.76678 -34.83140 -34.60236 -33.01447 -32.81919 -30.76792 -28.37476 -26.63179 -24.51610 -23.29627 -23.10030 -22.81121 -21.32655 -18.48590 -18.01697 -17.83413 -17.37041 -17.16943 -16.81063 -16.16250 -16.05494 -15.84065 -15.38113 -15.02229 -14.61494 -14.39814 -14.21156 -13.97613 -13.83792 -13.65571 -13.38876 -12.94536 -12.82918 -12.66611 -12.48211 -12.22429 -12.06612 -11.67261 -11.25004 -11.03404 -10.76198 -10.64384 -10.43678 -10.05992 -9.84741 -9.01509 -8.60930 -8.22209 -6.01499 -0.13382 0.31521 0.89533 1.34365 1.43470 1.47677 1.73528 2.19490 2.37059 2.91625 3.05262 3.11892 3.33488 3.47941 3.74548 3.82353 3.96326 4.05526 4.08163 4.11135 4.24097 4.28382 4.37837 4.42517 4.50166 4.51828 4.70401 4.85920 4.90421 5.03682 5.17543 5.27868 5.29115 5.45819 5.49636 5.75822 6.17431 6.99606 7.00172 7.14825 7.64605 8.29556 8.85900 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021034 B = 0.003793 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.844558 B = 7380.925874 C = 8245.889315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.023 3.977 3 Si 0.968 3.032 4 H -0.293 1.293 5 H -0.280 1.280 6 H -0.252 1.252 7 C -0.356 4.356 8 H 0.079 0.921 9 N -0.439 5.439 10 C 0.478 3.522 11 O -0.571 6.571 12 C -0.091 4.091 13 S -0.246 6.246 14 C -0.046 4.046 15 C -0.127 4.127 16 C -0.069 4.069 17 C -0.169 4.169 18 C 0.088 3.912 19 N -0.512 5.512 20 C 0.101 3.899 21 C 0.042 3.958 22 C -0.170 4.170 23 C -0.179 4.179 24 H 0.259 0.741 25 H 0.108 0.892 26 H 0.121 0.879 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.149 0.851 30 H 0.166 0.834 31 H 0.182 0.818 32 H 0.163 0.837 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.127 0.873 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.446 -15.188 -4.292 17.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.183 4.183 3 Si 0.793 3.207 4 H -0.221 1.221 5 H -0.206 1.206 6 H -0.176 1.176 7 C -0.484 4.484 8 H 0.097 0.903 9 N -0.160 5.160 10 C 0.266 3.734 11 O -0.451 6.451 12 C -0.242 4.242 13 S -0.018 6.018 14 C -0.194 4.194 15 C -0.130 4.130 16 C -0.097 4.097 17 C -0.188 4.188 18 C -0.070 4.070 19 N -0.221 5.221 20 C -0.058 4.058 21 C -0.063 4.063 22 C -0.208 4.208 23 C -0.217 4.217 24 H 0.068 0.932 25 H 0.126 0.874 26 H 0.139 0.861 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.167 0.833 30 H 0.184 0.816 31 H 0.199 0.801 32 H 0.180 0.820 33 H 0.146 0.854 34 H 0.098 0.902 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.381 -13.770 -6.000 16.320 hybrid contribution 0.159 0.372 1.657 1.706 sum -6.222 -13.398 -4.343 15.398 Atomic orbital electron populations 1.69928 1.07951 1.27634 1.44887 1.26041 0.95507 1.02568 0.94229 0.85351 0.79184 0.78731 0.77451 1.22050 1.20565 1.17562 1.19091 0.94706 0.85052 1.49529 0.90300 1.42882 1.43602 1.08152 1.21412 1.19907 0.83163 0.88869 0.81468 1.90534 1.63817 1.36451 1.54339 1.23369 1.01696 1.00307 0.98821 1.88066 1.60578 1.17541 1.35589 1.22316 1.01404 0.96926 0.98721 1.20308 0.95134 1.02462 0.95139 1.21857 0.92990 0.94137 1.00715 1.22484 1.02896 1.00768 0.92677 1.23332 0.90727 0.93817 0.99110 1.67734 1.07631 1.14003 1.32728 1.22874 1.00284 0.95292 0.87303 1.22060 0.95189 0.90440 0.98617 1.23127 1.03482 1.02124 0.92042 1.23348 0.96622 1.00552 1.01207 0.93156 0.87378 0.86116 0.87108 0.87475 0.83305 0.81610 0.80108 0.82012 0.85436 0.90167 0.86341 0.85496 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -53.28 11.74 21.66 0.25 -53.02 16 2 C 0.02 1.33 4.39 84.93 0.37 1.70 16 3 Si 0.97 46.25 29.59 68.60 2.03 48.28 16 4 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.25 -10.98 7.11 99.48 0.71 -10.28 16 7 C -0.36 -19.58 7.91 84.04 0.66 -18.92 16 8 H 0.08 4.19 7.27 -2.91 -0.02 4.17 16 9 N -0.44 -21.69 2.83 -613.13 -1.74 -23.42 16 10 C 0.48 24.40 6.98 87.66 0.61 25.02 16 11 O -0.57 -35.18 13.63 -3.05 -0.04 -35.22 16 12 C -0.09 -3.33 5.04 71.24 0.36 -2.98 16 13 S -0.25 -9.02 20.86 -56.49 -1.18 -10.19 16 14 C -0.05 -1.06 6.10 71.24 0.43 -0.62 16 15 C -0.13 -2.98 5.16 -19.77 -0.10 -3.08 16 16 C -0.07 -1.44 9.86 22.47 0.22 -1.22 16 17 C -0.17 -2.97 10.11 22.36 0.23 -2.74 16 18 C 0.09 1.71 11.18 84.69 0.95 2.66 16 19 N -0.51 -12.88 10.36 -195.84 -2.03 -14.91 16 20 C 0.10 2.48 10.86 84.67 0.92 3.39 16 21 C 0.04 1.53 5.87 45.00 0.26 1.79 16 22 C -0.17 -5.54 9.80 30.62 0.30 -5.24 16 23 C -0.18 -5.30 10.36 30.62 0.32 -4.98 16 24 H 0.26 15.40 8.32 -92.71 -0.77 14.63 16 25 H 0.11 3.52 7.57 -2.39 -0.02 3.50 16 26 H 0.12 3.63 8.11 -2.39 -0.02 3.61 16 27 H 0.11 2.08 8.09 -2.39 -0.02 2.06 16 28 H 0.11 2.07 8.09 -2.39 -0.02 2.05 16 29 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 30 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.13 3.89 6.96 -2.39 -0.02 3.88 16 34 H 0.08 3.08 6.73 -2.39 -0.02 3.06 16 35 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -78.81 331.76 3.90 -74.90 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 1.07 Total: 18.80 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 5.54 Total: -5.21 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -3.51 Total: -91.35 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.04 Total: -35.22 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.18 Total: -10.19 kcal Total: -78.81 3.90 -74.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894610.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.363 kcal (2) G-P(sol) polarization free energy of solvation -78.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds