Wall clock time and date at job start Tue Mar 31 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99976 * 2 1 4 4 H 1.48499 * 109.47246 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47292 * 300.00391 * 3 2 1 6 6 H 1.48510 * 109.46802 * 60.00020 * 3 2 1 7 7 C 1.38944 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00172 * 197.99719 * 7 2 1 9 9 N 1.37102 * 120.00014 * 17.99598 * 7 2 1 10 10 C 1.34778 * 119.99887 * 44.48421 * 9 7 2 11 11 O 1.21297 * 119.99722 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00032 * 179.97438 * 10 9 7 13 13 S 1.81404 * 109.47191 * 180.02562 * 12 10 9 14 14 C 1.81402 * 103.00083 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.47046 * 180.02562 * 14 13 12 16 16 C 1.38233 * 119.61435 * 270.01858 * 15 14 13 17 17 C 1.38634 * 119.15643 * 179.74415 * 16 15 14 18 18 C 1.38671 * 118.41911 * 0.47561 * 17 16 15 19 19 C 1.38180 * 119.16674 * 359.50836 * 18 17 16 20 20 N 1.31848 * 119.62075 * 89.99582 * 15 14 13 21 21 C 1.46497 * 120.00213 * 224.48452 * 9 7 2 22 22 C 1.53003 * 117.49686 * 3.27668 * 21 9 7 23 23 C 1.52995 * 117.50157 * 294.61406 * 21 9 7 24 24 H 0.97002 * 120.00303 * 354.95812 * 1 2 3 25 25 H 1.09005 * 109.47036 * 60.00170 * 12 10 9 26 26 H 1.08997 * 109.47416 * 300.00285 * 12 10 9 27 27 H 1.09000 * 109.46975 * 59.99960 * 14 13 12 28 28 H 1.09001 * 109.46583 * 299.99513 * 14 13 12 29 29 H 1.07990 * 120.42030 * 359.95803 * 16 15 14 30 30 H 1.07998 * 120.78472 * 180.22855 * 17 16 15 31 31 H 1.08002 * 120.41734 * 179.77212 * 18 17 16 32 32 H 1.08003 * 119.61985 * 180.25607 * 19 18 17 33 33 H 1.09001 * 115.55090 * 148.93814 * 21 9 7 34 34 H 1.09000 * 117.49955 * 359.97438 * 22 21 9 35 35 H 1.09002 * 117.49916 * 145.02271 * 22 21 9 36 36 H 1.08996 * 117.50033 * 214.97987 * 23 21 9 37 37 H 1.09004 * 117.49812 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3964 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0493 -1.2260 0.2895 9 7 1.3737 -2.3618 -0.3658 10 6 0.5768 -2.3787 -1.4526 11 8 0.4219 -1.3691 -2.1068 12 6 -0.1210 -3.6521 -1.8556 13 16 -1.1109 -3.3537 -3.3461 14 6 -1.8612 -4.9734 -3.6689 15 6 -2.7284 -4.8893 -4.8984 16 6 -4.0627 -4.5511 -4.7713 17 6 -4.8506 -4.4712 -5.9092 18 6 -4.2668 -4.7454 -7.1367 19 6 -2.9262 -5.0767 -7.1858 20 7 -2.2057 -5.1386 -6.0829 21 6 1.5611 -3.5812 0.4241 22 6 2.4158 -3.4791 1.6891 23 6 2.9616 -4.1967 0.4519 24 1 -0.4851 0.8368 0.0738 25 1 -0.7726 -3.9812 -1.0461 26 1 0.6210 -4.4236 -2.0611 27 1 -2.4696 -5.2688 -2.8141 28 1 -1.0758 -5.7122 -3.8286 29 1 -4.4851 -4.3483 -3.7983 30 1 -5.8952 -4.2057 -5.8407 31 1 -4.8515 -4.6964 -8.0435 32 1 -2.4630 -5.2876 -8.1384 33 1 0.7112 -4.2633 0.4447 34 1 2.8389 -2.5048 1.9333 35 1 2.1284 -4.0945 2.5417 36 1 3.0330 -5.2836 0.4911 37 1 3.7434 -3.6944 -0.1179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065894688.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:27 Heat of formation + Delta-G solvation = 46.238879 kcal Electronic energy + Delta-G solvation = -20140.709381 eV Core-core repulsion = 17011.052354 eV Total energy + Delta-G solvation = -3129.657027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.19081 -38.53814 -36.06611 -33.10444 -32.84204 -32.36207 -31.10839 -29.07622 -27.68453 -24.65792 -23.59382 -22.25990 -21.74699 -21.23171 -19.47499 -17.10329 -16.52357 -16.33692 -16.10771 -15.71094 -15.44950 -14.89482 -14.51605 -14.23688 -13.96648 -13.72446 -13.51440 -13.28811 -12.91755 -12.69926 -12.30125 -11.97020 -11.69733 -11.68812 -11.08760 -10.92767 -10.87622 -10.55088 -10.15991 -10.00947 -9.97308 -9.79227 -9.60814 -9.48306 -8.91594 -8.73643 -8.10680 -7.14802 -7.03406 -6.11846 -3.88648 0.84848 1.18764 2.10508 3.02594 3.30132 3.40285 3.42903 3.82278 4.04797 4.15001 4.26466 4.58848 4.72058 4.73391 4.82754 4.95421 5.01966 5.24026 5.29898 5.33387 5.52751 5.55531 5.61306 5.69707 5.70604 5.76671 5.86660 6.01314 6.06406 6.08073 6.19709 6.41231 6.58481 6.70622 6.90519 7.61263 7.92436 8.24659 9.01873 9.11244 9.61951 10.23007 10.97010 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.003811 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.371374 B = 7345.965921 C = 8211.003518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.349 4.349 8 H 0.079 0.921 9 N -0.424 5.424 10 C 0.498 3.502 11 O -0.512 6.512 12 C -0.114 4.114 13 S -0.158 6.158 14 C -0.072 4.072 15 C 0.154 3.846 16 C -0.155 4.155 17 C -0.075 4.075 18 C -0.178 4.178 19 C 0.101 3.899 20 N -0.473 5.473 21 C 0.072 3.928 22 C -0.172 4.172 23 C -0.207 4.207 24 H 0.265 0.735 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.156 0.844 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.188 -12.593 -6.337 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.212 1.212 7 C -0.476 4.476 8 H 0.097 0.903 9 N -0.145 5.145 10 C 0.284 3.716 11 O -0.388 6.388 12 C -0.266 4.266 13 S 0.068 5.932 14 C -0.220 4.220 15 C 0.016 3.984 16 C -0.177 4.177 17 C -0.101 4.101 18 C -0.199 4.199 19 C -0.057 4.057 20 N -0.183 5.183 21 C -0.034 4.034 22 C -0.209 4.209 23 C -0.246 4.246 24 H 0.075 0.925 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.173 0.827 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.656 -11.201 -7.347 14.957 hybrid contribution -0.460 -0.252 0.964 1.097 sum -7.116 -11.452 -6.383 14.917 Atomic orbital electron populations 1.69826 1.06551 1.27462 1.42526 1.25261 0.94854 0.99449 0.94169 0.86146 0.79804 0.82554 0.77533 1.19532 1.20565 1.21153 1.18883 0.94453 0.83613 1.50618 0.90317 1.42638 1.44063 1.07088 1.20761 1.18926 0.83332 0.87423 0.81964 1.90578 1.61887 1.33854 1.52507 1.23670 1.01338 1.03282 0.98292 1.87760 1.59826 1.10370 1.35196 1.22333 1.01408 1.01828 0.96466 1.20395 0.91262 0.94567 0.92190 1.21990 0.94620 1.00793 1.00303 1.21574 1.00312 0.95912 0.92307 1.22137 0.96909 1.02095 0.98751 1.22746 0.90993 0.95238 0.96694 1.67445 1.39128 1.13486 0.98213 1.21710 0.92587 0.91595 0.97497 1.23074 1.04327 1.02515 0.91017 1.23334 0.99693 0.98476 1.03127 0.92522 0.89131 0.88999 0.88869 0.88595 0.84422 0.84731 0.84855 0.82687 0.88174 0.87394 0.89768 0.89778 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.77 11.74 55.50 0.65 -24.12 16 2 C 0.07 2.08 4.39 -17.47 -0.08 2.01 16 3 Si 0.91 22.10 29.59 -169.99 -5.03 17.07 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.35 -9.53 7.91 -14.93 -0.12 -9.65 16 8 H 0.08 2.08 7.27 -52.48 -0.38 1.70 16 9 N -0.42 -10.61 2.83 -107.73 -0.31 -10.91 16 10 C 0.50 12.81 6.98 -10.99 -0.08 12.73 16 11 O -0.51 -15.42 13.64 5.54 0.08 -15.35 16 12 C -0.11 -2.24 5.04 36.00 0.18 -2.06 16 13 S -0.16 -3.09 20.86 -107.50 -2.24 -5.34 16 14 C -0.07 -1.03 6.23 36.00 0.22 -0.80 16 15 C 0.15 2.18 6.04 -82.59 -0.50 1.68 16 16 C -0.16 -1.87 9.75 -39.44 -0.38 -2.25 16 17 C -0.08 -0.75 10.18 -39.28 -0.40 -1.15 16 18 C -0.18 -1.70 10.11 -39.44 -0.40 -2.10 16 19 C 0.10 1.15 11.18 -17.55 -0.20 0.95 16 20 N -0.47 -6.88 10.27 -9.47 -0.10 -6.98 16 21 C 0.07 1.43 5.87 -67.93 -0.40 1.03 16 22 C -0.17 -3.04 9.80 -26.69 -0.26 -3.30 16 23 C -0.21 -3.48 10.36 -26.69 -0.28 -3.76 16 24 H 0.26 7.56 8.32 -40.82 -0.34 7.22 16 25 H 0.09 1.61 7.56 -51.92 -0.39 1.21 16 26 H 0.09 1.58 8.11 -51.93 -0.42 1.16 16 27 H 0.09 1.11 8.08 -51.92 -0.42 0.69 16 28 H 0.10 1.30 8.14 -51.92 -0.42 0.88 16 29 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 30 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.16 1.31 8.06 -52.48 -0.42 0.88 16 33 H 0.10 1.74 6.96 -51.93 -0.36 1.37 16 34 H 0.11 2.12 6.73 -51.93 -0.35 1.78 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 331.92 15.07 5.00 5.00 Total: -1.00 -34.93 331.92 -9.47 -44.40 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.84 Total: 2.88 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.68 Total: -6.67 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.25 Total: -42.00 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.08 Total: -15.35 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.24 Total: -5.34 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.93 -9.47 -44.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894688.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.639 kcal (2) G-P(sol) polarization free energy of solvation -34.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds