Wall clock time and date at job start Tue Mar 31 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99976 * 2 1 4 4 H 1.48499 * 109.47246 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47292 * 300.00391 * 3 2 1 6 6 H 1.48510 * 109.46802 * 60.00020 * 3 2 1 7 7 C 1.38944 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00172 * 197.99719 * 7 2 1 9 9 N 1.37102 * 120.00014 * 17.99598 * 7 2 1 10 10 C 1.34778 * 119.99887 * 44.48421 * 9 7 2 11 11 O 1.21297 * 119.99722 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00032 * 179.97438 * 10 9 7 13 13 S 1.81404 * 109.47191 * 180.02562 * 12 10 9 14 14 C 1.81402 * 103.00083 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.47046 * 180.02562 * 14 13 12 16 16 C 1.38233 * 119.61435 * 270.01858 * 15 14 13 17 17 C 1.38634 * 119.15643 * 179.74415 * 16 15 14 18 18 C 1.38671 * 118.41911 * 0.47561 * 17 16 15 19 19 C 1.38180 * 119.16674 * 359.50836 * 18 17 16 20 20 N 1.31848 * 119.62075 * 89.99582 * 15 14 13 21 21 C 1.46497 * 120.00213 * 224.48452 * 9 7 2 22 22 C 1.53003 * 117.49686 * 3.27668 * 21 9 7 23 23 C 1.52995 * 117.50157 * 294.61406 * 21 9 7 24 24 H 0.97002 * 120.00303 * 354.95812 * 1 2 3 25 25 H 1.09005 * 109.47036 * 60.00170 * 12 10 9 26 26 H 1.08997 * 109.47416 * 300.00285 * 12 10 9 27 27 H 1.09000 * 109.46975 * 59.99960 * 14 13 12 28 28 H 1.09001 * 109.46583 * 299.99513 * 14 13 12 29 29 H 1.07990 * 120.42030 * 359.95803 * 16 15 14 30 30 H 1.07998 * 120.78472 * 180.22855 * 17 16 15 31 31 H 1.08002 * 120.41734 * 179.77212 * 18 17 16 32 32 H 1.08003 * 119.61985 * 180.25607 * 19 18 17 33 33 H 1.09001 * 115.55090 * 148.93814 * 21 9 7 34 34 H 1.09000 * 117.49955 * 359.97438 * 22 21 9 35 35 H 1.09002 * 117.49916 * 145.02271 * 22 21 9 36 36 H 1.08996 * 117.50033 * 214.97987 * 23 21 9 37 37 H 1.09004 * 117.49812 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3964 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0493 -1.2260 0.2895 9 7 1.3737 -2.3618 -0.3658 10 6 0.5768 -2.3787 -1.4526 11 8 0.4219 -1.3691 -2.1068 12 6 -0.1210 -3.6521 -1.8556 13 16 -1.1109 -3.3537 -3.3461 14 6 -1.8612 -4.9734 -3.6689 15 6 -2.7284 -4.8893 -4.8984 16 6 -4.0627 -4.5511 -4.7713 17 6 -4.8506 -4.4712 -5.9092 18 6 -4.2668 -4.7454 -7.1367 19 6 -2.9262 -5.0767 -7.1858 20 7 -2.2057 -5.1386 -6.0829 21 6 1.5611 -3.5812 0.4241 22 6 2.4158 -3.4791 1.6891 23 6 2.9616 -4.1967 0.4519 24 1 -0.4851 0.8368 0.0738 25 1 -0.7726 -3.9812 -1.0461 26 1 0.6210 -4.4236 -2.0611 27 1 -2.4696 -5.2688 -2.8141 28 1 -1.0758 -5.7122 -3.8286 29 1 -4.4851 -4.3483 -3.7983 30 1 -5.8952 -4.2057 -5.8407 31 1 -4.8515 -4.6964 -8.0435 32 1 -2.4630 -5.2876 -8.1384 33 1 0.7112 -4.2633 0.4447 34 1 2.8389 -2.5048 1.9333 35 1 2.1284 -4.0945 2.5417 36 1 3.0330 -5.2836 0.4911 37 1 3.7434 -3.6944 -0.1179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065894688.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:26 Heat of formation + Delta-G solvation = 24.361151 kcal Electronic energy + Delta-G solvation = -20141.658070 eV Core-core repulsion = 17011.052354 eV Total energy + Delta-G solvation = -3130.605716 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.05752 -40.36064 -37.76936 -34.82658 -33.99467 -33.24288 -33.00889 -30.78402 -28.69829 -26.64052 -24.43371 -23.29184 -23.09769 -22.81326 -21.33573 -18.52315 -17.94137 -17.68750 -17.33787 -17.05644 -16.79667 -16.36041 -16.12715 -15.86829 -15.39924 -15.14022 -14.62883 -14.35500 -14.31266 -13.86447 -13.81950 -13.42507 -13.36943 -12.96780 -12.79634 -12.63052 -12.53935 -12.22953 -12.07043 -11.67562 -11.24977 -10.97518 -10.78377 -10.76067 -10.40531 -10.06519 -9.86277 -9.01595 -8.61218 -8.21995 -6.01177 -0.13587 0.35157 0.85937 1.34077 1.42671 1.49881 1.69008 2.19081 2.36613 2.93316 3.04745 3.11726 3.24608 3.33544 3.71406 3.95165 4.01564 4.10743 4.15069 4.22488 4.23418 4.28525 4.36118 4.39346 4.44205 4.49774 4.73922 4.84848 4.90274 5.03504 5.20764 5.26816 5.27623 5.46098 5.49785 5.78372 6.17833 6.99345 7.03942 7.14654 7.64047 8.28937 8.86424 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.003811 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.371374 B = 7345.965921 C = 8211.003518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.023 3.977 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.356 4.356 8 H 0.080 0.920 9 N -0.439 5.439 10 C 0.479 3.521 11 O -0.571 6.571 12 C -0.090 4.090 13 S -0.235 6.235 14 C -0.044 4.044 15 C 0.122 3.878 16 C -0.164 4.164 17 C -0.077 4.077 18 C -0.166 4.166 19 C 0.084 3.916 20 N -0.508 5.508 21 C 0.041 3.959 22 C -0.168 4.168 23 C -0.180 4.180 24 H 0.260 0.740 25 H 0.111 0.889 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.100 0.900 29 H 0.148 0.852 30 H 0.167 0.833 31 H 0.170 0.830 32 H 0.178 0.822 33 H 0.128 0.872 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.839 -14.836 -6.422 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.184 4.184 3 Si 0.793 3.207 4 H -0.181 1.181 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.483 4.483 8 H 0.097 0.903 9 N -0.160 5.160 10 C 0.267 3.733 11 O -0.451 6.451 12 C -0.242 4.242 13 S -0.008 6.008 14 C -0.192 4.192 15 C -0.016 4.016 16 C -0.186 4.186 17 C -0.103 4.103 18 C -0.186 4.186 19 C -0.074 4.074 20 N -0.218 5.218 21 C -0.064 4.064 22 C -0.206 4.206 23 C -0.219 4.219 24 H 0.069 0.931 25 H 0.129 0.871 26 H 0.136 0.864 27 H 0.135 0.865 28 H 0.119 0.881 29 H 0.166 0.834 30 H 0.184 0.816 31 H 0.188 0.812 32 H 0.195 0.805 33 H 0.145 0.855 34 H 0.099 0.901 35 H 0.137 0.863 36 H 0.144 0.856 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.263 -13.482 -7.378 16.999 hybrid contribution -0.284 0.326 0.885 0.985 sum -7.547 -13.156 -6.493 16.498 Atomic orbital electron populations 1.69934 1.07976 1.27603 1.44874 1.26055 0.95520 1.02605 0.94214 0.85283 0.79349 0.78924 0.77100 1.18077 1.22446 1.19548 1.19120 0.94707 0.85017 1.49502 0.90282 1.42879 1.43543 1.08196 1.21361 1.19850 0.83205 0.88738 0.81499 1.90532 1.63859 1.36404 1.54320 1.23373 1.01721 1.00433 0.98650 1.87981 1.60935 1.16162 1.35693 1.22281 1.01500 0.97611 0.97846 1.20448 0.92166 0.96871 0.92070 1.22223 0.94182 1.00438 1.01752 1.22025 1.01691 0.94846 0.91762 1.22563 0.96344 0.99673 1.00069 1.23267 0.92108 0.95251 0.96745 1.67379 1.40610 1.14688 0.99130 1.22068 0.95209 0.90454 0.98692 1.23132 1.03334 1.02134 0.91972 1.23346 0.96645 1.00543 1.01321 0.93129 0.87078 0.86413 0.86476 0.88099 0.83436 0.81574 0.81245 0.80473 0.85457 0.90066 0.86272 0.85559 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -53.73 11.74 21.66 0.25 -53.48 16 2 C 0.02 1.31 4.39 84.93 0.37 1.68 16 3 Si 0.97 46.65 29.59 68.60 2.03 48.68 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.30 -15.07 7.11 99.48 0.71 -14.37 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.36 -19.84 7.91 84.04 0.66 -19.17 16 8 H 0.08 4.26 7.27 -2.91 -0.02 4.24 16 9 N -0.44 -22.12 2.83 -613.13 -1.74 -23.86 16 10 C 0.48 25.15 6.98 87.66 0.61 25.76 16 11 O -0.57 -35.87 13.64 -3.08 -0.04 -35.91 16 12 C -0.09 -3.52 5.04 71.23 0.36 -3.16 16 13 S -0.23 -9.31 20.86 -56.49 -1.18 -10.49 16 14 C -0.04 -1.22 6.23 71.23 0.44 -0.78 16 15 C 0.12 3.36 6.04 42.55 0.26 3.62 16 16 C -0.16 -3.70 9.75 22.36 0.22 -3.49 16 17 C -0.08 -1.34 10.18 22.47 0.23 -1.11 16 18 C -0.17 -2.69 10.11 22.36 0.23 -2.46 16 19 C 0.08 1.77 11.18 84.67 0.95 2.71 16 20 N -0.51 -14.45 10.27 -183.89 -1.89 -16.34 16 21 C 0.04 1.53 5.87 44.99 0.26 1.79 16 22 C -0.17 -5.59 9.80 30.62 0.30 -5.29 16 23 C -0.18 -5.53 10.36 30.62 0.32 -5.21 16 24 H 0.26 15.48 8.32 -92.71 -0.77 14.71 16 25 H 0.11 3.78 7.56 -2.39 -0.02 3.77 16 26 H 0.12 3.87 8.11 -2.39 -0.02 3.85 16 27 H 0.12 2.59 8.08 -2.39 -0.02 2.57 16 28 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.15 2.88 8.06 -2.92 -0.02 2.86 16 30 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 32 H 0.18 2.67 8.06 -2.91 -0.02 2.64 16 33 H 0.13 4.03 6.96 -2.39 -0.02 4.02 16 34 H 0.08 3.15 6.73 -2.39 -0.02 3.14 16 35 H 0.12 3.10 8.14 -2.39 -0.02 3.09 16 36 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 37 H 0.07 2.54 8.14 -2.38 -0.02 2.53 16 Total: -1.00 -80.99 331.92 3.72 -77.27 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 1.07 Total: 19.23 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 5.21 Total: -5.11 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -3.37 Total: -93.68 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -0.04 Total: -35.91 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Atomic # 16 Polarization: -9.31 SS G_CDS: -1.18 Total: -10.49 kcal Total: -80.99 3.72 -77.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894688.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.633 kcal (2) G-P(sol) polarization free energy of solvation -80.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds