Wall clock time and date at job start Tue Mar 31 2020 06:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47213 * 2 1 4 4 C 1.37468 * 123.35268 * 265.02513 * 3 2 1 5 5 C 1.33813 * 115.10477 * 179.97438 * 4 3 2 6 6 S 1.70623 * 110.95409 * 359.97438 * 5 4 3 7 7 C 1.36644 * 123.34968 * 84.72786 * 3 2 1 8 8 C 1.46580 * 125.46071 * 0.03618 * 7 3 2 9 9 O 1.21703 * 119.99905 * 351.69279 * 8 7 3 10 10 N 1.34773 * 120.00320 * 171.69699 * 8 7 3 11 11 C 1.46505 * 120.00041 * 2.08174 * 10 8 7 12 12 C 1.50696 * 109.47047 * 82.40403 * 11 10 8 13 13 H 1.08006 * 120.00336 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00035 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99814 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99710 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47135 * 90.00031 * 16 14 12 18 18 H 1.48497 * 109.46955 * 210.00042 * 16 14 12 19 19 H 1.48496 * 109.47227 * 330.00032 * 16 14 12 20 20 C 1.46498 * 120.00495 * 182.08065 * 10 8 7 21 21 C 1.53000 * 109.47004 * 94.93931 * 20 10 8 22 22 C 1.47203 * 109.47044 * 180.02562 * 21 20 10 23 23 N 7.99557 * 99.06206 * 86.68357 * 2 1 3 24 24 H 1.09001 * 109.46973 * 59.99891 * 1 2 3 25 25 H 1.09000 * 109.46932 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47248 * 299.99764 * 1 2 3 27 27 H 1.09001 * 109.46973 * 120.00109 * 2 1 3 28 28 H 1.09000 * 109.47668 * 240.00149 * 2 1 3 29 29 H 1.08005 * 122.44689 * 359.93784 * 4 3 2 30 30 H 1.08000 * 124.52478 * 179.97438 * 5 4 3 31 31 H 1.08996 * 109.47305 * 202.40830 * 11 10 8 32 32 H 1.09004 * 109.46907 * 322.40972 * 11 10 8 33 33 H 0.97008 * 119.99718 * 180.02562 * 15 14 12 34 34 H 1.08997 * 109.47542 * 214.94351 * 20 10 8 35 35 H 1.09002 * 109.47121 * 334.94129 * 20 10 8 36 36 H 1.08997 * 109.47051 * 299.99822 * 21 20 10 37 37 H 1.08994 * 109.47357 * 60.00191 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3782 2.1002 -1.1440 5 6 2.8034 3.3545 -0.9528 6 16 2.7913 3.7568 0.7053 7 6 2.1839 2.1640 1.1366 8 6 1.8896 1.7061 2.4976 9 8 1.3333 0.6380 2.6733 10 7 2.2349 2.4679 3.5544 11 6 2.8632 3.7741 3.3417 12 6 1.7992 4.8035 3.0603 13 1 0.7589 4.5138 3.0422 14 6 2.1537 6.1152 2.8260 15 7 1.2250 7.0136 2.5809 16 14 3.9530 6.6161 2.8567 17 1 4.5287 6.4774 1.4949 18 1 4.0661 8.0287 3.3004 19 1 4.6947 5.7404 3.7991 20 6 1.9821 1.9898 4.9159 21 6 3.2396 1.3080 5.4588 22 6 2.9853 0.8271 6.8266 23 7 2.7893 0.4568 7.8825 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.3121 1.6540 -2.1253 30 1 3.1130 4.0229 -1.7425 31 1 3.4183 4.0602 4.2351 32 1 3.5453 3.7154 2.4934 33 1 1.4745 7.9364 2.4157 34 1 1.7216 2.8336 5.5548 35 1 1.1584 1.2759 4.9032 36 1 3.4999 0.4642 4.8199 37 1 4.0632 2.0218 5.4715 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067230299.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:12 Heat of formation + Delta-G solvation = 21.217925 kcal Electronic energy + Delta-G solvation = -21300.869217 eV Core-core repulsion = 18170.127200 eV Total energy + Delta-G solvation = -3130.742017 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.54957 -37.63676 -36.62714 -35.32721 -33.14095 -32.19361 -31.63866 -28.61971 -28.14817 -25.19022 -23.61421 -22.87667 -21.78296 -19.90297 -17.83949 -17.62340 -17.32705 -17.06744 -15.61048 -15.42486 -14.81178 -14.66915 -14.39832 -14.12693 -13.61721 -13.53301 -13.13936 -13.01282 -12.75474 -12.70356 -12.41309 -12.36051 -12.21433 -11.74178 -11.65284 -11.39285 -11.22045 -11.00006 -10.85281 -10.74196 -10.50227 -10.36293 -9.89043 -9.45333 -9.27054 -9.01803 -8.26520 -7.98965 -7.57132 -6.45452 -4.42629 1.23397 2.36501 2.74517 2.85014 2.85936 2.98211 3.01839 3.07553 3.14072 3.51500 3.80745 4.04070 4.26702 4.84921 5.05693 5.19899 5.33135 5.35796 5.53639 5.56219 5.74124 5.87252 5.91741 5.96058 6.05519 6.13606 6.18157 6.24464 6.32328 6.41909 6.60801 6.72071 6.95576 7.02214 7.07161 7.09374 7.61857 7.85529 8.12233 8.60788 8.73959 9.08795 10.65540 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.009855 B = 0.009215 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.639859 B = 3037.699811 C = 5261.520752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.060 4.060 3 C -0.042 4.042 4 C -0.162 4.162 5 C -0.317 4.317 6 S 0.353 5.647 7 C -0.286 4.286 8 C 0.597 3.403 9 O -0.550 6.550 10 N -0.593 5.593 11 C 0.196 3.804 12 C -0.538 4.538 13 H 0.088 0.912 14 C 0.090 3.910 15 N -0.870 5.870 16 Si 0.845 3.155 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.257 1.257 20 C 0.127 3.873 21 C -0.047 4.047 22 C 0.220 3.780 23 N -0.446 5.446 24 H 0.044 0.956 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.121 0.879 30 H 0.148 0.852 31 H 0.052 0.948 32 H 0.034 0.966 33 H 0.271 0.729 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.717 -6.556 -4.280 9.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.099 4.099 3 C -0.058 4.058 4 C -0.193 4.193 5 C -0.455 4.455 6 S 0.631 5.369 7 C -0.407 4.407 8 C 0.388 3.612 9 O -0.431 6.431 10 N -0.324 5.324 11 C 0.072 3.928 12 C -0.580 4.580 13 H 0.106 0.894 14 C -0.117 4.117 15 N -0.505 5.505 16 Si 0.670 3.330 17 H -0.187 1.187 18 H -0.201 1.201 19 H -0.181 1.181 20 C 0.002 3.998 21 C -0.088 4.088 22 C -0.098 4.098 23 N -0.124 5.124 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.139 0.861 30 H 0.166 0.834 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.527 -6.081 -1.911 8.437 hybrid contribution 0.595 -0.313 -1.573 1.711 sum 6.122 -6.394 -3.484 9.513 Atomic orbital electron populations 1.21599 0.94955 1.00810 1.01959 1.20209 0.96129 0.91466 1.02118 1.19194 0.98900 0.96938 0.90814 1.19539 1.06729 0.94536 0.98475 1.26470 1.08596 1.01090 1.09337 1.85352 1.52960 1.07527 0.91012 1.24336 1.18955 1.00594 0.96853 1.16962 0.77777 0.83325 0.83187 1.90708 1.43574 1.22987 1.85813 1.47660 1.60889 1.19333 1.04478 1.20136 0.94608 0.80807 0.97219 1.21367 0.95111 0.91941 1.49558 0.89380 1.24811 0.97052 0.96071 0.93773 1.69859 1.32935 1.02994 1.44753 0.87260 0.85956 0.79655 0.80143 1.18708 1.20099 1.18114 1.21158 0.95391 0.99910 0.83366 1.19791 1.01867 1.02463 0.84686 1.29045 0.93111 0.92987 0.94693 1.81195 1.08772 1.09813 1.12593 0.93641 0.93237 0.91768 0.89787 0.92418 0.86101 0.83390 0.93020 0.94975 0.91825 0.89203 0.89037 0.87169 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.73 37.16 0.36 -1.69 16 2 C -0.06 -0.92 5.47 -27.88 -0.15 -1.08 16 3 C -0.04 -0.73 5.16 -105.48 -0.54 -1.27 16 4 C -0.16 -2.63 9.96 -41.42 -0.41 -3.04 16 5 C -0.32 -5.29 10.92 29.18 0.32 -4.97 16 6 S 0.35 6.62 15.22 -107.50 -1.64 4.99 16 7 C -0.29 -5.42 6.23 -36.80 -0.23 -5.65 16 8 C 0.60 11.41 7.54 -12.90 -0.10 11.31 16 9 O -0.55 -10.89 12.97 5.19 0.07 -10.83 16 10 N -0.59 -10.50 2.48 -176.64 -0.44 -10.94 16 11 C 0.20 3.71 3.84 -5.19 -0.02 3.69 16 12 C -0.54 -12.39 7.53 -34.44 -0.26 -12.64 16 13 H 0.09 2.35 8.06 -52.48 -0.42 1.92 16 14 C 0.09 2.14 5.09 -17.82 -0.09 2.05 16 15 N -0.87 -22.77 13.96 55.43 0.77 -22.00 16 16 Si 0.85 17.16 26.79 -169.99 -4.55 12.60 16 17 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 18 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.26 -4.80 6.54 56.52 0.37 -4.43 16 20 C 0.13 1.85 5.40 -4.04 -0.02 1.83 16 21 C -0.05 -0.53 6.03 -29.52 -0.18 -0.71 16 22 C 0.22 2.90 15.43 -20.76 -0.32 2.58 16 23 N -0.45 -7.02 18.54 42.16 0.78 -6.24 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.13 7.22 -51.93 -0.37 0.75 16 27 H 0.08 1.38 6.57 -51.93 -0.34 1.04 16 28 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 29 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 30 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 31 H 0.05 0.91 7.08 -51.93 -0.37 0.55 16 32 H 0.03 0.62 3.93 -22.31 -0.09 0.53 16 33 H 0.27 6.67 8.31 -40.82 -0.34 6.34 16 34 H 0.09 1.29 8.11 -51.93 -0.42 0.86 16 35 H 0.09 1.39 7.25 -51.93 -0.38 1.02 16 36 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -27.09 322.35 -6.31 -33.40 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -4.52 Total: 3.72 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -1.65 Total: -9.57 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 1.12 Total: -39.17 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.07 Total: -10.83 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -4.55 Total: 12.60 kcal Atomic # 16 Polarization: 6.62 SS G_CDS: -1.64 Total: 4.99 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.09 -6.31 -33.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067230299.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.623 kcal (2) G-P(sol) polarization free energy of solvation -27.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds