Wall clock time and date at job start Tue Mar 31 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53009 * 109.47329 * 270.23234 * 3 2 1 5 5 N 1.46493 * 109.47290 * 180.02562 * 4 3 2 6 6 C 1.46496 * 120.00297 * 270.00336 * 5 4 3 7 7 C 1.50709 * 109.47001 * 270.00103 * 6 5 4 8 8 H 1.08001 * 119.99331 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00246 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00062 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00393 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46949 * 59.99466 * 11 9 7 13 13 H 1.48496 * 109.47644 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47133 * 299.99954 * 11 9 7 15 15 C 1.34784 * 119.99962 * 90.00051 * 5 4 3 16 16 O 1.21281 * 120.00093 * 179.97438 * 15 5 4 17 17 C 1.50696 * 119.99865 * 0.02562 * 15 5 4 18 18 C 1.53000 * 109.47110 * 179.97438 * 17 15 5 19 19 C 1.50706 * 109.47116 * 179.97438 * 18 17 15 20 20 C 1.33391 * 125.19937 * 90.00083 * 19 18 17 21 21 C 1.38423 * 114.92045 * 179.97438 * 20 19 18 22 22 C 1.33390 * 114.91979 * 359.97438 * 21 20 19 23 23 S 1.75878 * 125.20693 * 269.69344 * 19 18 17 24 24 H 1.09000 * 109.47000 * 150.23407 * 3 2 1 25 25 H 1.08999 * 109.47598 * 30.23457 * 3 2 1 26 26 H 1.09000 * 109.46938 * 60.00135 * 4 3 2 27 27 H 1.08999 * 109.46962 * 300.00613 * 4 3 2 28 28 H 1.09000 * 109.47287 * 29.99656 * 6 5 4 29 29 H 1.09002 * 109.47320 * 150.00258 * 6 5 4 30 30 H 0.96994 * 120.00434 * 180.02562 * 10 9 7 31 31 H 1.09000 * 109.47543 * 59.99570 * 17 15 5 32 32 H 1.09008 * 109.47338 * 300.00084 * 17 15 5 33 33 H 1.09000 * 109.46884 * 60.00335 * 18 17 15 34 34 H 1.09000 * 109.46955 * 299.99651 * 18 17 15 35 35 H 1.07995 * 122.54106 * 359.95411 * 20 19 18 36 36 H 1.08001 * 122.53959 * 180.02562 * 21 20 19 37 37 H 1.07998 * 125.20163 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.0050 1.4425 5 7 4.5830 -0.0037 1.4425 6 6 5.3166 -1.2717 1.4371 7 6 5.5682 -1.7126 2.8562 8 1 5.2170 -1.1083 3.6796 9 6 6.2474 -2.8866 3.1032 10 7 6.6755 -3.6221 2.1004 11 14 6.5599 -3.4327 4.8620 12 1 5.2627 -3.6147 5.5616 13 1 7.3034 -4.7181 4.8566 14 1 7.3613 -2.3997 5.5661 15 6 5.2559 1.1642 1.4475 16 8 6.4687 1.1652 1.4479 17 6 4.5012 2.4685 1.4535 18 6 5.4944 3.6323 1.4590 19 6 4.7397 4.9368 1.4644 20 6 4.3543 5.5976 2.5572 21 6 3.6728 6.7779 2.3151 22 6 3.5052 7.0758 1.0258 23 16 4.2391 5.8246 0.0311 24 1 2.9709 0.8929 -0.5102 25 1 2.9718 -0.8870 -0.5174 26 1 2.7551 -0.8972 1.9527 27 1 2.7542 0.8827 1.9600 28 1 4.7282 -2.0297 0.9201 29 1 6.2689 -1.1383 0.9239 30 1 7.1531 -4.4483 2.2741 31 1 3.8748 2.5218 2.3440 32 1 3.8741 2.5297 0.5640 33 1 6.1210 3.5793 0.5687 34 1 6.1211 3.5710 2.3487 35 1 4.5582 5.2388 3.5552 36 1 3.3054 7.4100 3.1100 37 1 2.9998 7.9532 0.6501 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067231452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:04 Heat of formation + Delta-G solvation = -4.748727 kcal Electronic energy + Delta-G solvation = -20156.277690 eV Core-core repulsion = 17024.409674 eV Total energy + Delta-G solvation = -3131.868015 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.80820 -38.75544 -37.97768 -36.69048 -34.99431 -34.41094 -32.13515 -30.24979 -28.76921 -26.18384 -25.28974 -24.40180 -23.00551 -20.06409 -19.84488 -18.82628 -18.33372 -18.24234 -17.35466 -17.05516 -16.44061 -16.25586 -16.06077 -15.65035 -14.96774 -14.75112 -14.41474 -14.06067 -13.99721 -13.70053 -13.55285 -13.50078 -13.27056 -13.04809 -13.01036 -12.81478 -12.80032 -12.62472 -12.44746 -12.15522 -12.02191 -11.75113 -11.66749 -11.51604 -10.56845 -10.56229 -9.49419 -9.45168 -9.32569 -8.16396 -6.28782 0.14233 0.78424 1.17680 1.41412 1.44057 1.50832 1.69796 1.85250 1.90116 1.93547 2.33059 2.47385 3.12345 3.16820 3.68738 4.02858 4.05175 4.12613 4.18361 4.27910 4.35339 4.53208 4.64662 4.73806 4.78175 4.85620 4.97007 5.07306 5.15889 5.18788 5.32311 5.36449 5.47590 5.63197 5.66859 5.90136 6.14939 6.61582 6.76392 6.84048 7.36064 7.54483 8.90124 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.004068 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.401265 B = 6881.406762 C = 8087.982456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.246 3.754 3 C -0.039 4.039 4 C 0.114 3.886 5 N -0.598 5.598 6 C 0.259 3.741 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.011 3.989 10 N -0.926 5.926 11 Si 0.957 3.043 12 H -0.263 1.263 13 H -0.283 1.283 14 H -0.279 1.279 15 C 0.502 3.498 16 O -0.590 6.590 17 C -0.123 4.123 18 C -0.030 4.030 19 C -0.179 4.179 20 C -0.146 4.146 21 C -0.141 4.141 22 C -0.217 4.217 23 S 0.087 5.913 24 H 0.136 0.864 25 H 0.120 0.880 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.033 0.967 29 H 0.004 0.996 30 H 0.265 0.735 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.146 0.854 36 H 0.158 0.842 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.322 18.869 -2.860 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.071 4.071 3 C -0.080 4.080 4 C -0.011 4.011 5 N -0.328 5.328 6 C 0.137 3.863 7 C -0.580 4.580 8 H 0.072 0.928 9 C -0.188 4.188 10 N -0.566 5.566 11 Si 0.783 3.217 12 H -0.188 1.188 13 H -0.208 1.208 14 H -0.204 1.204 15 C 0.292 3.708 16 O -0.470 6.470 17 C -0.163 4.163 18 C -0.069 4.069 19 C -0.296 4.296 20 C -0.177 4.177 21 C -0.171 4.171 22 C -0.352 4.352 23 S 0.350 5.650 24 H 0.154 0.846 25 H 0.138 0.862 26 H 0.101 0.899 27 H 0.125 0.875 28 H 0.051 0.949 29 H 0.022 0.978 30 H 0.074 0.926 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.164 0.836 36 H 0.176 0.824 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -9.165 18.472 -4.465 21.098 hybrid contribution 0.851 -0.589 2.298 2.520 sum -8.314 17.883 -2.167 19.840 Atomic orbital electron populations 1.81248 1.14393 1.11062 1.10015 1.29145 0.94945 0.91305 0.91742 1.19845 0.80108 1.08023 1.00019 1.21514 0.79088 1.05383 0.95117 1.48101 1.06732 1.06545 1.71466 1.18800 0.91473 0.80353 0.95626 1.21745 1.36345 1.06295 0.93597 0.92758 1.25723 0.95235 0.96718 1.01125 1.70017 1.39066 1.14937 1.32623 0.85622 0.78672 0.77281 0.80173 1.18805 1.20813 1.20430 1.21260 0.87736 0.86374 0.75475 1.90671 1.16587 1.88022 1.51732 1.21751 0.98830 0.89197 1.06507 1.19741 0.95786 0.87663 1.03754 1.24468 1.07223 1.01645 0.96268 1.20415 1.01395 0.96159 0.99702 1.20415 1.01564 0.97935 0.97209 1.25927 1.08193 1.04422 0.96653 1.84338 1.54127 1.16581 1.09940 0.84613 0.86195 0.89892 0.87516 0.94869 0.97799 0.92594 0.86900 0.86282 0.91090 0.90647 0.83617 0.82426 0.79874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.59 18.54 20.00 0.37 -13.22 16 2 C 0.25 5.36 15.43 89.44 1.38 6.74 16 3 C -0.04 -0.70 6.03 28.79 0.17 -0.53 16 4 C 0.11 2.74 5.17 86.38 0.45 3.18 16 5 N -0.60 -21.09 2.46 -826.14 -2.03 -23.12 16 6 C 0.26 12.41 5.16 85.64 0.44 12.85 16 7 C -0.54 -29.07 9.39 25.60 0.24 -28.83 16 8 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 9 C 0.01 0.61 5.46 84.65 0.46 1.07 16 10 N -0.93 -53.69 13.29 21.45 0.28 -53.41 16 11 Si 0.96 43.42 29.54 68.60 2.03 45.44 16 12 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 15 C 0.50 17.64 7.67 87.65 0.67 18.31 16 16 O -0.59 -27.30 15.56 -3.03 -0.05 -27.34 16 17 C -0.12 -2.80 4.23 29.85 0.13 -2.67 16 18 C -0.03 -0.71 5.00 29.85 0.15 -0.56 16 19 C -0.18 -3.65 5.76 24.59 0.14 -3.50 16 20 C -0.15 -2.72 10.05 21.22 0.21 -2.50 16 21 C -0.14 -2.21 10.18 21.22 0.22 -1.99 16 22 C -0.22 -3.25 11.23 66.72 0.75 -2.50 16 23 S 0.09 1.55 23.33 -56.49 -1.32 0.23 16 24 H 0.14 1.75 7.22 -2.39 -0.02 1.73 16 25 H 0.12 2.22 8.14 -2.39 -0.02 2.21 16 26 H 0.08 2.22 8.07 -2.39 -0.02 2.20 16 27 H 0.11 1.95 6.44 -2.39 -0.02 1.94 16 28 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 29 H 0.00 0.22 7.42 -2.39 -0.02 0.20 16 30 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 31 H 0.11 2.17 7.40 -2.39 -0.02 2.15 16 32 H 0.12 1.99 7.19 -2.38 -0.02 1.97 16 33 H 0.07 1.85 8.10 -2.39 -0.02 1.83 16 34 H 0.07 2.04 8.10 -2.39 -0.02 2.02 16 35 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -72.09 341.24 5.78 -66.32 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 1.08 Total: 6.03 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 5.41 Total: -0.93 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -1.37 Total: -89.75 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.05 Total: -27.34 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -1.32 Total: 0.23 kcal Total: -72.09 5.78 -66.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067231452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.570 kcal (2) G-P(sol) polarization free energy of solvation -72.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds