Wall clock time and date at job start Tue Mar 31 2020 07:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81004 * 109.46874 * 2 1 4 4 C 1.76208 * 99.99760 * 180.02562 * 3 2 1 5 5 C 1.39494 * 119.53683 * 179.97438 * 4 3 2 6 6 C 1.36790 * 119.38533 * 179.76105 * 5 4 3 7 7 C 1.40454 * 118.49138 * 0.49954 * 6 5 4 8 8 C 1.47395 * 120.47907 * 179.77616 * 7 6 5 9 9 O 1.21640 * 119.99736 * 327.94509 * 8 7 6 10 10 N 1.34775 * 119.99860 * 147.94580 * 8 7 6 11 11 C 1.36911 * 120.00355 * 6.97992 * 10 8 7 12 12 H 1.07996 * 119.99946 * 307.91168 * 11 10 8 13 13 C 1.39013 * 119.99776 * 127.91331 * 11 10 8 14 14 N 1.31385 * 120.00444 * 342.89849 * 13 11 10 15 15 Si 1.86799 * 119.99458 * 162.90127 * 13 11 10 16 16 H 1.48504 * 109.47168 * 180.02562 * 15 13 11 17 17 H 1.48499 * 109.47416 * 299.99668 * 15 13 11 18 18 H 1.48501 * 109.47489 * 59.99715 * 15 13 11 19 19 C 1.46503 * 119.99694 * 186.97800 * 10 8 7 20 20 C 1.52997 * 117.49771 * 181.15840 * 19 10 8 21 21 C 1.52999 * 117.50237 * 112.53415 * 19 10 8 22 22 C 1.39666 * 119.04575 * 359.50335 * 7 6 5 23 23 N 1.31635 * 120.51139 * 0.24582 * 22 7 6 24 24 H 1.09002 * 109.47128 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47225 * 300.00088 * 1 2 3 26 26 H 1.09004 * 109.47054 * 60.00084 * 1 2 3 27 27 H 1.09005 * 109.47176 * 240.00160 * 2 1 3 28 28 H 1.09004 * 109.47435 * 119.99532 * 2 1 3 29 29 H 1.08003 * 120.30390 * 0.02562 * 5 4 3 30 30 H 1.07993 * 120.75911 * 180.27756 * 6 5 4 31 31 H 0.97001 * 120.00229 * 175.07382 * 14 13 11 32 32 H 1.09003 * 115.55240 * 326.86408 * 19 10 8 33 33 H 1.08995 * 117.50047 * 359.97438 * 20 19 10 34 34 H 1.09001 * 117.49804 * 145.02408 * 20 19 10 35 35 H 1.08994 * 117.50569 * 214.98079 * 21 19 10 36 36 H 1.09000 * 117.49349 * 359.97438 * 21 19 10 37 37 H 1.08003 * 119.74156 * 180.27686 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1332 1.7065 0.0000 4 6 3.8713 1.4166 -0.0008 5 6 4.7493 2.5005 -0.0015 6 6 6.0980 2.2719 0.0028 7 6 6.5522 0.9429 -0.0028 8 6 7.9960 0.6462 -0.0034 9 8 8.7717 1.4009 -0.5588 10 7 8.4567 -0.4611 0.6114 11 6 7.5765 -1.3828 1.1118 12 1 6.7834 -1.0681 1.7738 13 6 7.7038 -2.7236 0.7676 14 7 8.4282 -3.0690 -0.2727 15 14 6.8449 -4.0343 1.7843 16 1 7.1374 -5.3739 1.2141 17 1 7.3356 -3.9752 3.1847 18 1 5.3793 -3.7959 1.7630 19 6 9.8994 -0.6786 0.7443 20 6 10.3594 -1.9677 1.4280 21 6 10.4949 -0.6270 2.1527 22 6 5.6162 -0.0937 -0.0020 23 7 4.3266 0.1704 -0.0010 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.3678 3.5109 -0.0012 30 1 6.7976 3.0945 0.0069 31 1 8.5758 -4.0070 -0.4710 32 1 10.5097 -0.2973 -0.0744 33 1 9.5888 -2.6537 1.7793 34 1 11.2726 -2.4348 1.0591 35 1 11.4970 -0.2122 2.2606 36 1 9.8133 -0.4308 2.9804 37 1 5.9531 -1.1198 -0.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068674175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:11 Heat of formation + Delta-G solvation = 34.601207 kcal Electronic energy + Delta-G solvation = -21035.106505 eV Core-core repulsion = 17904.944831 eV Total energy + Delta-G solvation = -3130.161674 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.88018 -38.31998 -36.16147 -33.46802 -32.92158 -31.96064 -31.72104 -30.39496 -25.45361 -24.61136 -23.52068 -22.60933 -21.44138 -21.00996 -19.50526 -17.73363 -17.17079 -16.64053 -15.62933 -15.37202 -15.18702 -14.85530 -14.73527 -14.06931 -13.85219 -13.53139 -13.35933 -12.93214 -12.80522 -12.53087 -12.18448 -12.12504 -11.65943 -11.49296 -11.43833 -11.17710 -10.97252 -10.52348 -10.48536 -10.32941 -9.86923 -9.59772 -9.43926 -9.35930 -9.17746 -8.81326 -8.59992 -7.43589 -7.30812 -6.52542 -4.39982 1.21041 1.73372 1.77968 2.34473 3.03907 3.11535 3.13246 3.66417 3.93263 4.32630 4.49413 4.66738 4.93778 4.98429 5.07470 5.13896 5.35351 5.37679 5.56972 5.62712 5.75719 5.79551 5.83620 5.91066 6.03905 6.04414 6.10711 6.23633 6.41019 6.46253 6.68423 6.79270 6.96780 7.14396 7.19196 7.28112 7.89326 8.14064 8.25020 8.82807 9.26788 9.72976 10.45317 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017007 B = 0.005531 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.949081 B = 5060.741278 C = 6386.890105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 S -0.097 6.097 4 C 0.118 3.882 5 C -0.170 4.170 6 C -0.025 4.025 7 C -0.151 4.151 8 C 0.532 3.468 9 O -0.593 6.593 10 N -0.406 5.406 11 C -0.365 4.365 12 H 0.088 0.912 13 C 0.061 3.939 14 N -0.832 5.832 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.269 1.269 18 H -0.264 1.264 19 C 0.107 3.893 20 C -0.149 4.149 21 C -0.214 4.214 22 C 0.158 3.842 23 N -0.502 5.502 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.133 0.867 30 H 0.139 0.861 31 H 0.274 0.726 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.956 3.113 2.376 9.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.246 4.246 3 S 0.142 5.858 4 C -0.130 4.130 5 C -0.196 4.196 6 C -0.053 4.053 7 C -0.159 4.159 8 C 0.321 3.679 9 O -0.478 6.478 10 N -0.123 5.123 11 C -0.492 4.492 12 H 0.105 0.895 13 C -0.149 4.149 14 N -0.464 5.464 15 Si 0.722 3.278 16 H -0.205 1.205 17 H -0.194 1.194 18 H -0.189 1.189 19 C 0.002 3.998 20 C -0.187 4.187 21 C -0.253 4.253 22 C -0.001 4.001 23 N -0.215 5.215 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.151 0.849 30 H 0.157 0.843 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -9.889 3.590 1.935 10.696 hybrid contribution 1.105 -1.279 0.561 1.781 sum -8.783 2.311 2.495 9.419 Atomic orbital electron populations 1.21587 0.92823 1.02744 1.02668 1.23322 0.98662 0.95443 1.07175 1.85408 0.95657 1.12524 1.92180 1.23084 0.97903 0.92556 0.99491 1.21160 0.93176 0.98868 1.06357 1.21254 0.94847 0.96538 0.92680 1.21014 0.96049 0.94141 1.04647 1.18047 0.86540 0.83427 0.79840 1.90643 1.57921 1.51814 1.47445 1.42561 1.03294 1.17693 1.48714 1.19173 1.12637 0.88208 1.29206 0.89481 1.25467 0.96504 0.98729 0.94240 1.70024 1.36210 1.18686 1.21493 0.86479 0.80724 0.80090 0.80549 1.20467 1.19369 1.18904 1.21199 0.83791 1.01339 0.93432 1.23060 1.01747 0.91076 1.02800 1.23343 1.00925 1.03278 0.97712 1.24635 0.85578 1.02625 0.87232 1.68259 1.17978 1.19188 1.16031 0.90964 0.91943 0.91946 0.88881 0.88869 0.84937 0.84342 0.91542 0.87585 0.87357 0.90435 0.90156 0.89445 0.77834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.92 37.16 0.37 -0.96 16 2 C -0.10 -1.24 5.54 37.16 0.21 -1.03 16 3 S -0.10 -1.36 22.05 -107.50 -2.37 -3.73 16 4 C 0.12 2.07 6.98 -16.72 -0.12 1.95 16 5 C -0.17 -2.82 9.77 -39.64 -0.39 -3.21 16 6 C -0.03 -0.47 9.68 -39.27 -0.38 -0.85 16 7 C -0.15 -3.27 5.61 -104.80 -0.59 -3.86 16 8 C 0.53 13.07 7.40 -12.53 -0.09 12.98 16 9 O -0.59 -15.71 16.60 5.24 0.09 -15.63 16 10 N -0.41 -9.85 2.71 -108.95 -0.30 -10.14 16 11 C -0.36 -8.59 5.25 -15.00 -0.08 -8.66 16 12 H 0.09 2.04 6.77 -52.49 -0.36 1.69 16 13 C 0.06 1.42 2.76 -17.46 -0.05 1.37 16 14 N -0.83 -20.40 11.88 55.50 0.66 -19.74 16 15 Si 0.90 18.09 29.32 -169.99 -4.98 13.10 16 16 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 17 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 18 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 19 C 0.11 2.46 5.64 -67.93 -0.38 2.08 16 20 C -0.15 -3.11 8.45 -26.73 -0.23 -3.33 16 21 C -0.21 -4.20 10.39 -26.73 -0.28 -4.48 16 22 C 0.16 3.36 9.12 -17.10 -0.16 3.20 16 23 N -0.50 -9.76 9.10 -11.64 -0.11 -9.87 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.09 1.26 8.12 -51.91 -0.42 0.84 16 28 H 0.09 1.27 8.12 -51.91 -0.42 0.85 16 29 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 30 H 0.14 2.39 8.01 -52.49 -0.42 1.97 16 31 H 0.27 6.38 8.32 -40.82 -0.34 6.04 16 32 H 0.11 2.52 7.77 -51.93 -0.40 2.11 16 33 H 0.11 2.41 5.07 -51.93 -0.26 2.15 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.21 4.64 4.99 -52.48 -0.26 4.38 16 LS Contribution 323.55 15.07 4.88 4.88 Total: -1.00 -26.98 323.55 -8.94 -35.92 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -4.64 Total: 10.00 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.16 Total: -4.80 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.26 Total: -39.75 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.09 Total: -15.63 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -4.98 Total: 13.10 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -2.37 Total: -3.73 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.98 -8.94 -35.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068674175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.521 kcal (2) G-P(sol) polarization free energy of solvation -26.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds