Wall clock time and date at job start Tue Mar 31 2020 07:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81004 * 109.46874 * 2 1 4 4 C 1.76208 * 99.99760 * 180.02562 * 3 2 1 5 5 C 1.39494 * 119.53683 * 179.97438 * 4 3 2 6 6 C 1.36790 * 119.38533 * 179.76105 * 5 4 3 7 7 C 1.40454 * 118.49138 * 0.49954 * 6 5 4 8 8 C 1.47395 * 120.47907 * 179.77616 * 7 6 5 9 9 O 1.21640 * 119.99736 * 327.94509 * 8 7 6 10 10 N 1.34775 * 119.99860 * 147.94580 * 8 7 6 11 11 C 1.36911 * 120.00355 * 6.97992 * 10 8 7 12 12 H 1.07996 * 119.99946 * 307.91168 * 11 10 8 13 13 C 1.39013 * 119.99776 * 127.91331 * 11 10 8 14 14 N 1.31385 * 120.00444 * 342.89849 * 13 11 10 15 15 Si 1.86799 * 119.99458 * 162.90127 * 13 11 10 16 16 H 1.48504 * 109.47168 * 180.02562 * 15 13 11 17 17 H 1.48499 * 109.47416 * 299.99668 * 15 13 11 18 18 H 1.48501 * 109.47489 * 59.99715 * 15 13 11 19 19 C 1.46503 * 119.99694 * 186.97800 * 10 8 7 20 20 C 1.52997 * 117.49771 * 181.15840 * 19 10 8 21 21 C 1.52999 * 117.50237 * 112.53415 * 19 10 8 22 22 C 1.39666 * 119.04575 * 359.50335 * 7 6 5 23 23 N 1.31635 * 120.51139 * 0.24582 * 22 7 6 24 24 H 1.09002 * 109.47128 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47225 * 300.00088 * 1 2 3 26 26 H 1.09004 * 109.47054 * 60.00084 * 1 2 3 27 27 H 1.09005 * 109.47176 * 240.00160 * 2 1 3 28 28 H 1.09004 * 109.47435 * 119.99532 * 2 1 3 29 29 H 1.08003 * 120.30390 * 0.02562 * 5 4 3 30 30 H 1.07993 * 120.75911 * 180.27756 * 6 5 4 31 31 H 0.97001 * 120.00229 * 175.07382 * 14 13 11 32 32 H 1.09003 * 115.55240 * 326.86408 * 19 10 8 33 33 H 1.08995 * 117.50047 * 359.97438 * 20 19 10 34 34 H 1.09001 * 117.49804 * 145.02408 * 20 19 10 35 35 H 1.08994 * 117.50569 * 214.98079 * 21 19 10 36 36 H 1.09000 * 117.49349 * 359.97438 * 21 19 10 37 37 H 1.08003 * 119.74156 * 180.27686 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1332 1.7065 0.0000 4 6 3.8713 1.4166 -0.0008 5 6 4.7493 2.5005 -0.0015 6 6 6.0980 2.2719 0.0028 7 6 6.5522 0.9429 -0.0028 8 6 7.9960 0.6462 -0.0034 9 8 8.7717 1.4009 -0.5588 10 7 8.4567 -0.4611 0.6114 11 6 7.5765 -1.3828 1.1118 12 1 6.7834 -1.0681 1.7738 13 6 7.7038 -2.7236 0.7676 14 7 8.4282 -3.0690 -0.2727 15 14 6.8449 -4.0343 1.7843 16 1 7.1374 -5.3739 1.2141 17 1 7.3356 -3.9752 3.1847 18 1 5.3793 -3.7959 1.7630 19 6 9.8994 -0.6786 0.7443 20 6 10.3594 -1.9677 1.4280 21 6 10.4949 -0.6270 2.1527 22 6 5.6162 -0.0937 -0.0020 23 7 4.3266 0.1704 -0.0010 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.3678 3.5109 -0.0012 30 1 6.7976 3.0945 0.0069 31 1 8.5758 -4.0070 -0.4710 32 1 10.5097 -0.2973 -0.0744 33 1 9.5888 -2.6537 1.7793 34 1 11.2726 -2.4348 1.0591 35 1 11.4970 -0.2122 2.2606 36 1 9.8133 -0.4308 2.9804 37 1 5.9531 -1.1198 -0.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068674175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:11 Heat of formation + Delta-G solvation = 20.705679 kcal Electronic energy + Delta-G solvation = -21035.709060 eV Core-core repulsion = 17904.944831 eV Total energy + Delta-G solvation = -3130.764229 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.49486 -40.00007 -37.96878 -35.22484 -33.95489 -33.53498 -33.30319 -31.95684 -27.28003 -26.08865 -24.77728 -23.88715 -23.07216 -22.68186 -21.31664 -19.33652 -18.62557 -18.34440 -17.28371 -16.86271 -16.60014 -16.38617 -15.92269 -15.69349 -15.41208 -14.96869 -14.88008 -14.63554 -14.24853 -13.86256 -13.85872 -13.34928 -13.24307 -13.01940 -12.71881 -12.47083 -12.36601 -12.14158 -12.09623 -11.59557 -11.45128 -11.24881 -11.01506 -10.97713 -10.64755 -10.51190 -10.36720 -9.25716 -8.55962 -8.31880 -6.24646 -0.31565 0.30184 0.50270 1.19565 1.41958 1.45680 1.52530 1.93270 2.23863 2.68658 2.78447 2.94947 3.36005 3.62740 3.97561 4.05174 4.05396 4.07713 4.14878 4.19252 4.23466 4.33519 4.45375 4.57371 4.75983 4.84430 4.92540 4.93701 4.96242 5.04914 5.22668 5.23157 5.30574 5.37412 5.50345 5.63596 6.07510 6.32068 6.72688 7.00353 7.42223 7.90165 8.67085 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017007 B = 0.005531 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.949081 B = 5060.741278 C = 6386.890105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.102 4.102 3 S -0.055 6.055 4 C 0.107 3.893 5 C -0.159 4.159 6 C -0.023 4.023 7 C -0.180 4.180 8 C 0.517 3.483 9 O -0.627 6.627 10 N -0.412 5.412 11 C -0.367 4.367 12 H 0.085 0.915 13 C 0.036 3.964 14 N -0.865 5.865 15 Si 0.954 3.046 16 H -0.278 1.278 17 H -0.263 1.263 18 H -0.264 1.264 19 C 0.070 3.930 20 C -0.140 4.140 21 C -0.185 4.185 22 C 0.152 3.848 23 N -0.510 5.510 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.171 0.829 30 H 0.149 0.851 31 H 0.276 0.724 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.978 3.532 3.442 12.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.251 4.251 3 S 0.185 5.815 4 C -0.142 4.142 5 C -0.185 4.185 6 C -0.051 4.051 7 C -0.188 4.188 8 C 0.307 3.693 9 O -0.515 6.515 10 N -0.127 5.127 11 C -0.495 4.495 12 H 0.102 0.898 13 C -0.172 4.172 14 N -0.498 5.498 15 Si 0.777 3.223 16 H -0.203 1.203 17 H -0.188 1.188 18 H -0.188 1.188 19 C -0.035 4.035 20 C -0.178 4.178 21 C -0.223 4.223 22 C -0.007 4.007 23 N -0.223 5.223 24 H 0.106 0.894 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.188 0.812 30 H 0.167 0.833 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.104 0.896 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -11.916 3.999 3.020 12.927 hybrid contribution 1.592 -1.338 0.191 2.089 sum -10.324 2.661 3.210 11.134 Atomic orbital electron populations 1.21592 0.90027 1.04117 1.03491 1.23457 1.00987 0.94430 1.06199 1.85279 0.91934 1.13185 1.91099 1.23804 1.00585 0.92080 0.97745 1.21535 0.92088 1.00447 1.04392 1.21428 0.96178 0.95491 0.92036 1.20898 0.94441 0.95772 1.07666 1.18594 0.87778 0.83383 0.79504 1.90586 1.59076 1.52867 1.49010 1.42766 1.03997 1.17687 1.48282 1.19234 1.12782 0.88417 1.29032 0.89798 1.26020 0.96668 0.99863 0.94640 1.70109 1.37772 1.19070 1.22816 0.85600 0.79655 0.77738 0.79302 1.20298 1.18806 1.18818 1.21308 0.83366 1.03808 0.94982 1.23008 1.01761 0.90750 1.02284 1.23364 1.01889 1.01804 0.95276 1.24181 0.86462 1.01633 0.88441 1.68267 1.16862 1.20524 1.16674 0.89370 0.91071 0.91104 0.89911 0.89876 0.81171 0.83318 0.91425 0.89423 0.88698 0.88847 0.87205 0.89616 0.79966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.92 71.98 0.71 -1.41 16 2 C -0.10 -2.38 5.54 71.98 0.40 -1.98 16 3 S -0.05 -1.38 22.05 -56.49 -1.25 -2.63 16 4 C 0.11 3.56 6.98 84.87 0.59 4.15 16 5 C -0.16 -4.98 9.77 22.23 0.22 -4.76 16 6 C -0.02 -0.87 9.68 22.47 0.22 -0.65 16 7 C -0.18 -8.01 5.61 -19.98 -0.11 -8.12 16 8 C 0.52 26.45 7.40 86.65 0.64 27.09 16 9 O -0.63 -34.69 16.60 -4.16 -0.07 -34.76 16 10 N -0.41 -20.66 2.71 -616.83 -1.67 -22.34 16 11 C -0.37 -17.74 5.25 84.09 0.44 -17.30 16 12 H 0.08 4.05 6.77 -2.91 -0.02 4.03 16 13 C 0.04 1.69 2.76 84.95 0.23 1.92 16 14 N -0.86 -43.33 11.88 21.67 0.26 -43.07 16 15 Si 0.95 37.22 29.32 68.60 2.01 39.24 16 16 H -0.28 -10.71 7.11 99.48 0.71 -10.00 16 17 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 18 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 19 C 0.07 3.29 5.64 44.99 0.25 3.55 16 20 C -0.14 -5.82 8.45 30.59 0.26 -5.56 16 21 C -0.18 -7.12 10.39 30.59 0.32 -6.80 16 22 C 0.15 6.60 9.12 85.07 0.78 7.38 16 23 N -0.51 -19.73 9.10 -190.75 -1.74 -21.46 16 24 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 2.13 8.12 -2.39 -0.02 2.11 16 28 H 0.08 2.14 8.12 -2.39 -0.02 2.12 16 29 H 0.17 3.99 8.06 -2.91 -0.02 3.97 16 30 H 0.15 5.08 8.01 -2.91 -0.02 5.06 16 31 H 0.28 13.06 8.32 -92.71 -0.77 12.29 16 32 H 0.09 4.36 7.77 -2.39 -0.02 4.34 16 33 H 0.09 4.22 5.07 -2.39 -0.01 4.20 16 34 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 35 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 36 H 0.09 3.33 8.14 -2.39 -0.02 3.32 16 37 H 0.18 8.68 4.99 -2.91 -0.01 8.66 16 Total: -1.00 -59.57 323.55 3.58 -56.00 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 1.08 Total: 31.52 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 4.95 Total: -2.49 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -3.15 Total: -86.87 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.07 Total: -34.76 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.01 Total: 39.24 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -1.25 Total: -2.63 kcal Total: -59.57 3.58 -56.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068674175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.702 kcal (2) G-P(sol) polarization free energy of solvation -59.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds