Wall clock time and date at job start Tue Mar 31 2020 06:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47274 * 2 1 4 4 C 1.36932 * 120.00038 * 269.47772 * 3 2 1 5 5 H 1.08006 * 120.00055 * 326.01314 * 4 3 2 6 6 C 1.38814 * 120.00203 * 146.01054 * 4 3 2 7 7 N 1.31618 * 119.99691 * 336.68190 * 6 4 3 8 8 Si 1.86797 * 120.00209 * 156.68203 * 6 4 3 9 9 H 1.48500 * 109.47163 * 89.99792 * 8 6 4 10 10 H 1.48499 * 109.47228 * 210.00135 * 8 6 4 11 11 H 1.48504 * 109.47209 * 330.00238 * 8 6 4 12 12 C 1.46503 * 120.00092 * 89.47444 * 3 2 1 13 13 C 1.50697 * 109.46796 * 90.00086 * 12 3 2 14 14 C 1.33690 * 122.05968 * 95.00769 * 13 12 3 15 15 S 1.76249 * 108.26647 * 180.02562 * 14 13 12 16 16 C 1.76173 * 89.85428 * 359.97438 * 15 14 13 17 17 C 1.47103 * 125.48104 * 179.97438 * 16 15 14 18 18 C 1.36257 * 125.96408 * 359.72018 * 17 16 15 19 19 C 1.40783 * 106.72699 * 179.90725 * 18 17 16 20 20 C 1.34819 * 107.07370 * 0.34904 * 19 18 17 21 21 C 1.50700 * 125.64311 * 179.76119 * 20 19 18 22 22 O 1.34284 * 108.72318 * 359.78717 * 20 19 18 23 23 N 1.30487 * 109.03839 * 0.02562 * 16 15 14 24 24 H 1.08995 * 109.47396 * 60.00240 * 1 2 3 25 25 H 1.09001 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47062 * 299.99635 * 1 2 3 27 27 H 1.09003 * 109.47208 * 239.99830 * 2 1 3 28 28 H 1.09004 * 109.47382 * 120.00000 * 2 1 3 29 29 H 0.97004 * 119.99725 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.46700 * 330.00174 * 12 3 2 31 31 H 1.08996 * 109.46735 * 210.00521 * 12 3 2 32 32 H 1.07998 * 125.86578 * 359.74326 * 14 13 12 33 33 H 1.08006 * 126.63541 * 359.97438 * 18 17 16 34 34 H 1.08000 * 126.46796 * 180.11593 * 19 18 17 35 35 H 1.08998 * 109.47384 * 180.02562 * 21 20 19 36 36 H 1.09011 * 109.46904 * 300.00403 * 21 20 19 37 37 H 1.09002 * 109.47047 * 59.99725 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2567 2.0231 -1.1858 5 1 2.6231 1.4676 -2.0365 6 6 2.0275 3.3879 -1.2947 7 7 1.1841 3.9808 -0.4765 8 14 2.9159 4.3829 -2.6024 9 1 2.1062 4.3993 -3.8471 10 1 3.1098 5.7737 -2.1195 11 1 4.2382 3.7665 -2.8802 12 6 2.2515 2.0757 1.2687 13 6 3.6710 1.8402 1.7166 14 6 4.6539 2.7044 1.4437 15 16 6.1496 2.0749 2.1313 16 6 5.2752 0.6700 2.7359 17 6 5.8666 -0.4413 3.4968 18 6 7.1775 -0.5625 3.8480 19 6 7.2955 -1.7690 4.5638 20 6 6.0678 -2.3243 4.6085 21 6 5.7189 -3.6316 5.2722 22 8 5.2073 -1.5204 3.9633 23 7 4.0188 0.7734 2.3992 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.0242 4.9345 -0.5523 30 1 1.5641 1.6939 2.0236 31 1 2.0856 3.1445 1.1336 32 1 4.5501 3.6271 0.8923 33 1 7.9722 0.1332 3.6220 34 1 8.1996 -2.1752 4.9928 35 1 4.6540 -3.8287 5.1491 36 1 6.2926 -4.4367 4.8129 37 1 5.9580 -3.5751 6.3341 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068958117.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:29 Heat of formation + Delta-G solvation = 78.090539 kcal Electronic energy + Delta-G solvation = -20627.408763 eV Core-core repulsion = 17499.132928 eV Total energy + Delta-G solvation = -3128.275835 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.52187 -39.05618 -35.74921 -33.24242 -32.56930 -31.86822 -30.54323 -28.68970 -27.04620 -26.24355 -23.79350 -23.13578 -21.86077 -20.73516 -20.05676 -18.79086 -17.81106 -16.72603 -16.26149 -16.12417 -15.02939 -14.71395 -14.37562 -13.85242 -13.61039 -13.44128 -13.37643 -13.02763 -12.93590 -12.78984 -12.67739 -12.33943 -12.00188 -11.96825 -11.24541 -11.11501 -10.93170 -10.70559 -10.43305 -10.17171 -10.04119 -9.97543 -9.76995 -9.32023 -9.24870 -8.71106 -8.58200 -7.62198 -6.72767 -5.90443 -3.39004 0.65040 1.45426 1.96235 2.15573 2.58721 3.06502 3.28584 3.37690 3.41636 3.58032 4.22839 4.42462 4.70951 4.91840 5.15110 5.22416 5.26613 5.43461 5.52675 5.59691 5.72017 5.85703 5.96659 6.00602 6.15053 6.19232 6.41636 6.47340 6.53822 6.72732 6.81124 6.87583 7.01835 7.11388 7.29059 7.48865 7.74574 8.29583 8.41976 9.07658 9.71633 10.29842 11.11116 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.004643 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.745326 B = 6029.026056 C = 7025.825394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 N -0.571 5.571 4 C -0.251 4.251 5 H 0.062 0.938 6 C 0.010 3.990 7 N -0.883 5.883 8 Si 0.890 3.110 9 H -0.284 1.284 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.206 3.794 13 C 0.068 3.932 14 C -0.216 4.216 15 S 0.070 5.930 16 C 0.102 3.898 17 C 0.072 3.928 18 C -0.181 4.181 19 C -0.210 4.210 20 C -0.006 4.006 21 C -0.074 4.074 22 O -0.150 6.150 23 N -0.432 5.432 24 H 0.054 0.946 25 H 0.031 0.969 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.257 0.743 30 H 0.044 0.956 31 H 0.118 0.882 32 H 0.178 0.822 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.622 -8.742 10.277 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.015 3.985 3 N -0.289 5.289 4 C -0.381 4.381 5 H 0.080 0.920 6 C -0.190 4.190 7 N -0.525 5.525 8 Si 0.719 3.281 9 H -0.211 1.211 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.076 3.924 13 C -0.066 4.066 14 C -0.356 4.356 15 S 0.323 5.677 16 C -0.172 4.172 17 C 0.018 3.982 18 C -0.204 4.204 19 C -0.229 4.229 20 C -0.059 4.059 21 C -0.130 4.130 22 O -0.045 6.045 23 N -0.147 5.147 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.135 0.865 32 H 0.195 0.805 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.853 -8.655 10.362 17.323 hybrid contribution -0.110 0.859 -1.095 1.396 sum 10.744 -7.795 9.268 16.189 Atomic orbital electron populations 1.22230 0.99366 0.98485 1.01854 1.20907 0.92024 0.86853 0.98681 1.43812 1.73072 1.10376 1.01659 1.19119 1.37175 0.91441 0.90402 0.91989 1.25057 0.97298 0.98465 0.98199 1.69965 1.32323 1.10485 1.39761 0.86485 0.80321 0.79521 0.81748 1.21065 1.21266 1.20262 1.19855 0.83817 1.02294 0.86467 1.21943 1.02320 0.87714 0.94600 1.26965 0.92392 1.06818 1.09402 1.84416 1.14575 1.16984 1.51747 1.24126 0.92063 0.96663 1.04328 1.19015 0.89769 0.87587 1.01798 1.21719 0.95021 0.99937 1.03715 1.21390 0.98073 0.97095 1.06390 1.22641 0.88603 0.95138 0.99512 1.20332 1.03738 0.89317 0.99657 1.84163 1.37776 1.27173 1.55424 1.66729 1.13423 1.22528 1.12035 0.92719 0.94964 0.93706 0.94179 0.94018 0.93298 0.93729 0.86500 0.80474 0.82997 0.83049 0.90353 0.89573 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 10.24 37.15 0.38 -2.94 16 2 C 0.14 3.18 6.39 -4.04 -0.03 3.15 16 3 N -0.57 -14.33 2.43 -174.61 -0.43 -14.76 16 4 C -0.25 -6.74 9.48 -15.06 -0.14 -6.88 16 5 H 0.06 1.69 7.93 -52.48 -0.42 1.27 16 6 C 0.01 0.26 4.94 -17.43 -0.09 0.18 16 7 N -0.88 -24.17 11.34 55.49 0.63 -23.54 16 8 Si 0.89 20.75 29.61 -169.99 -5.03 15.71 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.21 4.93 5.71 -5.19 -0.03 4.90 16 13 C 0.07 1.50 6.27 -84.40 -0.53 0.97 16 14 C -0.22 -4.31 11.06 29.14 0.32 -3.98 16 15 S 0.07 1.16 23.19 -107.50 -2.49 -1.33 16 16 C 0.10 1.92 7.50 -14.53 -0.11 1.81 16 17 C 0.07 1.21 7.24 -36.70 -0.27 0.94 16 18 C -0.18 -2.44 10.64 -39.33 -0.42 -2.86 16 19 C -0.21 -2.43 10.78 -39.83 -0.43 -2.86 16 20 C -0.01 -0.08 7.31 -35.52 -0.26 -0.34 16 21 C -0.07 -0.58 10.41 36.01 0.37 -0.20 16 22 O -0.15 -2.49 10.68 4.44 0.05 -2.44 16 23 N -0.43 -9.27 10.57 -7.73 -0.08 -9.36 16 24 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 28 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 29 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 31 H 0.12 3.02 5.27 -51.93 -0.27 2.74 16 32 H 0.18 3.47 8.06 -52.49 -0.42 3.04 16 33 H 0.15 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -29.83 335.82 -8.40 -38.23 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.89 Total: 0.52 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -1.22 Total: -8.10 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.12 Total: -47.65 kcal Atomic # 8 Polarization: -2.49 SS G_CDS: 0.05 Total: -2.44 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.71 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.49 Total: -1.33 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.83 -8.40 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068958117.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.317 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds