Wall clock time and date at job start Tue Mar 31 2020 06:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47274 * 2 1 4 4 C 1.36932 * 120.00038 * 269.47772 * 3 2 1 5 5 H 1.08006 * 120.00055 * 326.01314 * 4 3 2 6 6 C 1.38814 * 120.00203 * 146.01054 * 4 3 2 7 7 N 1.31618 * 119.99691 * 336.68190 * 6 4 3 8 8 Si 1.86797 * 120.00209 * 156.68203 * 6 4 3 9 9 H 1.48500 * 109.47163 * 89.99792 * 8 6 4 10 10 H 1.48499 * 109.47228 * 210.00135 * 8 6 4 11 11 H 1.48504 * 109.47209 * 330.00238 * 8 6 4 12 12 C 1.46503 * 120.00092 * 89.47444 * 3 2 1 13 13 C 1.50697 * 109.46796 * 90.00086 * 12 3 2 14 14 C 1.33690 * 122.05968 * 95.00769 * 13 12 3 15 15 S 1.76249 * 108.26647 * 180.02562 * 14 13 12 16 16 C 1.76173 * 89.85428 * 359.97438 * 15 14 13 17 17 C 1.47103 * 125.48104 * 179.97438 * 16 15 14 18 18 C 1.36257 * 125.96408 * 359.72018 * 17 16 15 19 19 C 1.40783 * 106.72699 * 179.90725 * 18 17 16 20 20 C 1.34819 * 107.07370 * 0.34904 * 19 18 17 21 21 C 1.50700 * 125.64311 * 179.76119 * 20 19 18 22 22 O 1.34284 * 108.72318 * 359.78717 * 20 19 18 23 23 N 1.30487 * 109.03839 * 0.02562 * 16 15 14 24 24 H 1.08995 * 109.47396 * 60.00240 * 1 2 3 25 25 H 1.09001 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47062 * 299.99635 * 1 2 3 27 27 H 1.09003 * 109.47208 * 239.99830 * 2 1 3 28 28 H 1.09004 * 109.47382 * 120.00000 * 2 1 3 29 29 H 0.97004 * 119.99725 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.46700 * 330.00174 * 12 3 2 31 31 H 1.08996 * 109.46735 * 210.00521 * 12 3 2 32 32 H 1.07998 * 125.86578 * 359.74326 * 14 13 12 33 33 H 1.08006 * 126.63541 * 359.97438 * 18 17 16 34 34 H 1.08000 * 126.46796 * 180.11593 * 19 18 17 35 35 H 1.08998 * 109.47384 * 180.02562 * 21 20 19 36 36 H 1.09011 * 109.46904 * 300.00403 * 21 20 19 37 37 H 1.09002 * 109.47047 * 59.99725 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2567 2.0231 -1.1858 5 1 2.6231 1.4676 -2.0365 6 6 2.0275 3.3879 -1.2947 7 7 1.1841 3.9808 -0.4765 8 14 2.9159 4.3829 -2.6024 9 1 2.1062 4.3993 -3.8471 10 1 3.1098 5.7737 -2.1195 11 1 4.2382 3.7665 -2.8802 12 6 2.2515 2.0757 1.2687 13 6 3.6710 1.8402 1.7166 14 6 4.6539 2.7044 1.4437 15 16 6.1496 2.0749 2.1313 16 6 5.2752 0.6700 2.7359 17 6 5.8666 -0.4413 3.4968 18 6 7.1775 -0.5625 3.8480 19 6 7.2955 -1.7690 4.5638 20 6 6.0678 -2.3243 4.6085 21 6 5.7189 -3.6316 5.2722 22 8 5.2073 -1.5204 3.9633 23 7 4.0188 0.7734 2.3992 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.0242 4.9345 -0.5523 30 1 1.5641 1.6939 2.0236 31 1 2.0856 3.1445 1.1336 32 1 4.5501 3.6271 0.8923 33 1 7.9722 0.1332 3.6220 34 1 8.1996 -2.1752 4.9928 35 1 4.6540 -3.8287 5.1491 36 1 6.2926 -4.4367 4.8129 37 1 5.9580 -3.5751 6.3341 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068958117.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:29 Heat of formation + Delta-G solvation = 61.530221 kcal Electronic energy + Delta-G solvation = -20628.126872 eV Core-core repulsion = 17499.132928 eV Total energy + Delta-G solvation = -3128.993945 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.58300 -40.61676 -37.60055 -34.26436 -33.83192 -33.68583 -31.93398 -30.38255 -28.18926 -28.06841 -25.54810 -24.55630 -22.92833 -22.33751 -21.39207 -20.28753 -19.31830 -18.41212 -17.60112 -17.36052 -16.75667 -16.12230 -16.01067 -15.68129 -15.18443 -14.89408 -14.47693 -14.20880 -13.92855 -13.89331 -13.86236 -13.72233 -13.68639 -13.16935 -12.92922 -12.77768 -12.56028 -12.52044 -12.24020 -12.14299 -11.84277 -11.61172 -11.10164 -10.81017 -10.60380 -10.54616 -10.04680 -8.87273 -8.69793 -7.90010 -5.44407 -0.69520 0.08688 0.64699 0.79781 1.42899 1.47082 1.51861 1.56597 2.01468 2.07204 2.49695 2.97146 3.21879 3.75114 3.80998 3.96626 4.10729 4.34709 4.38628 4.47165 4.54472 4.70384 4.71992 4.76255 4.76283 4.80846 4.94231 4.96744 5.03967 5.15896 5.21721 5.23152 5.47674 5.54246 5.56959 5.68580 6.07275 6.39561 6.82079 7.08305 7.76107 8.32437 9.09993 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.004643 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.745326 B = 6029.026056 C = 7025.825394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.140 3.860 3 N -0.586 5.586 4 C -0.268 4.268 5 H 0.052 0.948 6 C -0.025 4.025 7 N -0.910 5.910 8 Si 0.950 3.050 9 H -0.284 1.284 10 H -0.283 1.283 11 H -0.274 1.274 12 C 0.215 3.785 13 C 0.055 3.945 14 C -0.244 4.244 15 S 0.161 5.839 16 C 0.102 3.898 17 C 0.014 3.986 18 C -0.154 4.154 19 C -0.212 4.212 20 C -0.002 4.002 21 C -0.075 4.075 22 O -0.183 6.183 23 N -0.476 5.476 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.033 0.967 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.256 0.744 30 H 0.032 0.968 31 H 0.097 0.903 32 H 0.175 0.825 33 H 0.174 0.826 34 H 0.191 0.809 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.551 -10.131 11.373 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 N -0.305 5.305 4 C -0.398 4.398 5 H 0.070 0.930 6 C -0.223 4.223 7 N -0.553 5.553 8 Si 0.777 3.223 9 H -0.211 1.211 10 H -0.209 1.209 11 H -0.200 1.200 12 C 0.085 3.915 13 C -0.079 4.079 14 C -0.383 4.383 15 S 0.415 5.585 16 C -0.172 4.172 17 C -0.039 4.039 18 C -0.177 4.177 19 C -0.230 4.230 20 C -0.055 4.055 21 C -0.131 4.131 22 O -0.080 6.080 23 N -0.192 5.192 24 H 0.053 0.947 25 H 0.085 0.915 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.114 0.886 32 H 0.192 0.808 33 H 0.192 0.808 34 H 0.208 0.792 35 H 0.091 0.909 36 H 0.129 0.871 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.802 -10.038 11.462 20.558 hybrid contribution -0.843 1.094 -1.231 1.851 sum 12.958 -8.944 10.231 18.777 Atomic orbital electron populations 1.22069 0.98013 1.00234 1.00240 1.20949 0.93071 0.85955 0.98537 1.43947 1.74090 1.10989 1.01521 1.19207 1.37656 0.92048 0.90904 0.92992 1.25634 0.97643 0.98955 1.00061 1.70076 1.33449 1.10489 1.41319 0.85570 0.79159 0.78172 0.79376 1.21079 1.20850 1.19960 1.19520 0.85369 1.00727 0.85875 1.21503 1.01548 0.88895 0.95942 1.26986 0.94636 1.06871 1.09846 1.83902 1.10700 1.14265 1.49624 1.24697 0.91816 0.97811 1.02851 1.19109 0.91035 0.88484 1.05253 1.22156 0.93902 1.00418 1.01256 1.21853 0.99134 0.96117 1.05913 1.23689 0.88677 0.95571 0.97563 1.20608 1.03946 0.87616 1.00975 1.84142 1.39525 1.27866 1.56455 1.66672 1.15349 1.23071 1.14091 0.94703 0.91471 0.94750 0.94198 0.94087 0.93437 0.94975 0.88585 0.80785 0.80818 0.79198 0.90869 0.87117 0.86962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.18 10.24 71.98 0.74 -5.44 16 2 C 0.14 6.52 6.39 86.38 0.55 7.07 16 3 N -0.59 -30.63 2.43 -706.34 -1.72 -32.35 16 4 C -0.27 -14.84 9.48 84.03 0.80 -14.04 16 5 H 0.05 2.92 7.93 -2.91 -0.02 2.89 16 6 C -0.02 -1.35 4.94 84.86 0.42 -0.93 16 7 N -0.91 -51.42 11.34 21.65 0.25 -51.18 16 8 Si 0.95 43.36 29.61 68.60 2.03 45.39 16 9 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 C 0.21 10.85 5.71 85.63 0.49 11.34 16 13 C 0.06 2.51 6.27 41.60 0.26 2.78 16 14 C -0.24 -9.87 11.06 66.79 0.74 -9.13 16 15 S 0.16 5.09 23.19 -56.49 -1.31 3.78 16 16 C 0.10 3.80 7.50 87.22 0.65 4.46 16 17 C 0.01 0.46 7.24 24.14 0.17 0.63 16 18 C -0.15 -3.69 10.64 22.43 0.24 -3.45 16 19 C -0.21 -4.04 10.78 22.11 0.24 -3.80 16 20 C 0.00 -0.05 7.31 24.90 0.18 0.13 16 21 C -0.08 -0.93 10.41 71.24 0.74 -0.18 16 22 O -0.18 -5.94 10.68 -7.02 -0.07 -6.02 16 23 N -0.48 -21.04 10.57 -178.36 -1.89 -22.93 16 24 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.03 1.48 8.14 -2.39 -0.02 1.47 16 27 H 0.04 1.82 8.04 -2.39 -0.02 1.80 16 28 H 0.04 1.88 8.08 -2.39 -0.02 1.86 16 29 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 30 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 31 H 0.10 5.25 5.27 -2.39 -0.01 5.24 16 32 H 0.17 7.01 8.06 -2.91 -0.02 6.98 16 33 H 0.17 3.24 8.06 -2.91 -0.02 3.21 16 34 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -67.44 335.82 4.58 -62.86 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.07 Total: 11.04 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 6.22 Total: -10.59 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -3.36 Total: -106.46 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.07 Total: -6.02 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 5.09 SS G_CDS: -1.31 Total: 3.78 kcal Total: -67.44 4.58 -62.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068958117.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.392 kcal (2) G-P(sol) polarization free energy of solvation -67.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds