Wall clock time and date at job start Tue Mar 31 2020 06:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47301 * 108.98102 * 3 2 1 5 5 N 1.46490 * 109.47331 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00212 * 269.99751 * 5 4 3 7 7 C 1.50694 * 109.47269 * 270.00205 * 6 5 4 8 8 H 1.08011 * 120.00105 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00255 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99679 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00102 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47600 * 59.99581 * 11 9 7 13 13 H 1.48500 * 109.47048 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47249 * 299.99810 * 11 9 7 15 15 C 1.34783 * 120.00252 * 89.99905 * 5 4 3 16 16 O 1.21276 * 119.99950 * 180.02562 * 15 5 4 17 17 C 1.50704 * 119.99432 * 359.97438 * 15 5 4 18 18 C 1.53005 * 109.46526 * 180.02562 * 17 15 5 19 19 C 1.50700 * 109.46909 * 180.02562 * 18 17 15 20 20 C 1.38423 * 122.53613 * 270.00211 * 19 18 17 21 21 C 1.33390 * 114.91977 * 180.02562 * 20 19 18 22 22 S 1.75887 * 109.59565 * 359.75483 * 21 20 19 23 23 C 1.33391 * 122.54338 * 90.02238 * 19 18 17 24 24 H 1.08999 * 109.47364 * 348.97884 * 3 2 1 25 25 H 1.09000 * 109.46833 * 228.97728 * 3 2 1 26 26 H 1.08999 * 109.47089 * 59.99614 * 4 3 2 27 27 H 1.08998 * 109.46737 * 300.00136 * 4 3 2 28 28 H 1.09004 * 109.46979 * 29.99989 * 6 5 4 29 29 H 1.08999 * 109.47418 * 150.00132 * 6 5 4 30 30 H 0.97000 * 119.99887 * 180.02562 * 10 9 7 31 31 H 1.08994 * 109.46984 * 60.00404 * 17 15 5 32 32 H 1.08994 * 109.47395 * 299.99944 * 17 15 5 33 33 H 1.08994 * 109.47301 * 60.00425 * 18 17 15 34 34 H 1.09003 * 109.46866 * 299.99861 * 18 17 15 35 35 H 1.08001 * 122.53963 * 0.04211 * 20 19 18 36 36 H 1.07998 * 125.20164 * 180.02562 * 21 20 19 37 37 H 1.08002 * 125.19887 * 359.95301 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.4701 -1.3641 5 7 4.5827 0.4713 -1.3639 6 6 5.3142 1.6717 -0.9514 7 6 5.5648 2.5452 -2.1535 8 1 5.2145 2.2368 -3.1276 9 6 6.2411 3.7382 -2.0100 10 7 6.6671 4.1139 -0.8239 11 14 6.5510 4.8212 -3.5000 12 1 5.2530 5.2152 -4.1044 13 1 7.2926 6.0380 -3.0819 14 1 7.3545 4.0712 -4.4986 15 6 5.2577 -0.6319 -1.7433 16 8 6.4704 -0.6310 -1.7426 17 6 4.5052 -1.8670 -2.1671 18 6 5.5005 -2.9660 -2.5445 19 6 4.7481 -4.2009 -2.9690 20 6 4.3762 -5.1901 -2.0750 21 6 3.7166 -6.2163 -2.6147 22 16 3.5290 -5.9532 -4.3436 23 6 4.3905 -4.4237 -4.2346 24 1 2.9718 -1.0079 0.1965 25 1 2.9709 0.6753 0.7753 26 1 2.7540 1.4786 -1.5605 27 1 2.7547 -0.2046 -2.1394 28 1 4.7245 2.2226 -0.2186 29 1 6.2668 1.3823 -0.5077 30 1 7.1426 4.9533 -0.7228 31 1 3.8782 -1.6330 -3.0274 32 1 3.8791 -2.2113 -1.3441 33 1 6.1272 -3.1999 -1.6840 34 1 6.1269 -2.6219 -3.3675 35 1 4.6026 -5.1351 -1.0204 36 1 3.3497 -7.0750 -2.0721 37 1 4.5946 -3.7635 -5.0646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070870814.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:13 Heat of formation + Delta-G solvation = 13.776528 kcal Electronic energy + Delta-G solvation = -20203.962571 eV Core-core repulsion = 17072.897871 eV Total energy + Delta-G solvation = -3131.064700 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.47988 -38.24949 -36.84537 -35.24843 -33.11337 -32.46874 -30.82646 -29.32886 -27.43839 -25.24814 -23.99084 -23.06416 -21.84949 -18.78671 -18.45151 -17.76340 -17.52173 -16.47801 -16.45575 -15.55649 -15.30831 -14.88897 -14.65615 -14.26043 -13.78038 -13.49530 -13.23243 -13.10621 -12.83238 -12.57254 -12.41485 -12.35982 -12.10064 -11.92110 -11.73651 -11.61046 -11.25425 -11.04851 -10.95925 -10.85717 -10.67359 -10.59242 -10.19537 -9.72693 -9.06168 -8.88723 -8.47602 -8.44921 -7.84036 -6.09054 -4.13709 0.89819 1.55350 1.87326 2.59450 2.74031 2.82208 3.29617 3.31417 3.34764 3.39120 3.68183 4.21852 4.41526 4.77983 4.89803 5.01978 5.11582 5.16217 5.20182 5.26256 5.27842 5.42357 5.49310 5.53442 5.70087 5.81871 5.88165 5.98755 6.09714 6.19230 6.40545 6.48293 6.94473 7.36406 7.43388 7.58423 7.86944 8.17468 8.27502 8.83862 8.99445 9.51850 10.99059 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.003948 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.146405 B = 7090.517777 C = 8314.882219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.217 3.783 3 C -0.050 4.050 4 C 0.118 3.882 5 N -0.598 5.598 6 C 0.244 3.756 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.506 3.494 16 O -0.534 6.534 17 C -0.136 4.136 18 C -0.046 4.046 19 C -0.095 4.095 20 C -0.127 4.127 21 C -0.214 4.214 22 S 0.076 5.924 23 C -0.209 4.209 24 H 0.106 0.894 25 H 0.117 0.883 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.264 0.736 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.141 0.859 36 H 0.162 0.838 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.616 -17.498 -2.117 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.008 4.008 5 N -0.330 5.330 6 C 0.126 3.874 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.293 3.707 16 O -0.411 6.411 17 C -0.177 4.177 18 C -0.086 4.086 19 C -0.108 4.108 20 C -0.158 4.158 21 C -0.349 4.349 22 S 0.339 5.661 23 C -0.344 4.344 24 H 0.124 0.876 25 H 0.135 0.865 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.159 0.841 36 H 0.179 0.821 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.231 -18.158 -3.202 20.192 hybrid contribution 1.134 1.488 0.359 1.904 sum -7.097 -16.670 -2.843 18.340 Atomic orbital electron populations 1.81205 1.13071 1.09317 1.08775 1.29118 0.95122 0.92788 0.93042 1.19905 0.81307 1.05392 1.02593 1.21290 0.82294 1.03586 0.93673 1.48224 1.04789 1.14619 1.65330 1.19333 0.92624 0.79853 0.95632 1.21386 1.36840 1.04031 0.94555 0.92456 1.24911 0.95300 0.97704 0.96027 1.69906 1.38289 1.22932 1.22147 0.86584 0.78387 0.79696 0.82916 1.20255 1.21195 1.20181 1.20394 0.88129 0.84179 0.77985 1.90690 1.13891 1.83416 1.53075 1.21735 0.99199 0.93950 1.02806 1.20077 0.96067 0.89585 1.02908 1.19079 1.01220 0.98040 0.92419 1.20174 1.00617 0.93750 1.01229 1.25568 1.08013 1.04235 0.97106 1.84241 1.56670 1.18222 1.06921 1.25521 1.06965 1.00947 1.00979 0.87553 0.86539 0.88885 0.90576 0.94814 0.93576 0.92617 0.89320 0.89476 0.90008 0.90078 0.84104 0.82066 0.81808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.58 18.54 42.15 0.78 -5.80 16 2 C 0.22 2.62 15.43 -20.76 -0.32 2.30 16 3 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 4 C 0.12 1.55 5.17 -4.04 -0.02 1.53 16 5 N -0.60 -10.71 2.46 -175.06 -0.43 -11.14 16 6 C 0.24 5.73 5.16 -5.20 -0.03 5.71 16 7 C -0.53 -14.05 9.39 -34.44 -0.32 -14.38 16 8 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 11 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.51 8.98 7.67 -10.98 -0.08 8.90 16 16 O -0.53 -12.00 15.56 5.56 0.09 -11.91 16 17 C -0.14 -1.68 4.24 -27.88 -0.12 -1.80 16 18 C -0.05 -0.56 4.76 -27.88 -0.13 -0.70 16 19 C -0.10 -1.03 5.06 -106.25 -0.54 -1.57 16 20 C -0.13 -1.23 9.98 -41.21 -0.41 -1.65 16 21 C -0.21 -1.90 11.23 29.04 0.33 -1.58 16 22 S 0.08 0.70 23.34 -107.50 -2.51 -1.81 16 23 C -0.21 -2.15 10.98 29.04 0.32 -1.83 16 24 H 0.11 0.88 7.22 -51.93 -0.37 0.50 16 25 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 27 H 0.08 0.84 6.44 -51.93 -0.33 0.50 16 28 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 29 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 31 H 0.09 1.00 7.40 -51.93 -0.38 0.62 16 32 H 0.09 0.86 7.18 -51.93 -0.37 0.49 16 33 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 34 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 35 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 340.99 15.07 5.14 5.14 Total: -1.00 -32.35 340.99 -7.59 -39.94 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -4.77 Total: -1.70 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.60 Total: -4.14 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 1.09 Total: -41.63 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.51 Total: -1.81 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.35 -7.59 -39.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070870814.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.716 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds