Wall clock time and date at job start Tue Mar 31 2020 06:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47301 * 108.98102 * 3 2 1 5 5 N 1.46490 * 109.47331 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00212 * 269.99751 * 5 4 3 7 7 C 1.50694 * 109.47269 * 270.00205 * 6 5 4 8 8 H 1.08011 * 120.00105 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00255 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99679 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00102 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47600 * 59.99581 * 11 9 7 13 13 H 1.48500 * 109.47048 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47249 * 299.99810 * 11 9 7 15 15 C 1.34783 * 120.00252 * 89.99905 * 5 4 3 16 16 O 1.21276 * 119.99950 * 180.02562 * 15 5 4 17 17 C 1.50704 * 119.99432 * 359.97438 * 15 5 4 18 18 C 1.53005 * 109.46526 * 180.02562 * 17 15 5 19 19 C 1.50700 * 109.46909 * 180.02562 * 18 17 15 20 20 C 1.38423 * 122.53613 * 270.00211 * 19 18 17 21 21 C 1.33390 * 114.91977 * 180.02562 * 20 19 18 22 22 S 1.75887 * 109.59565 * 359.75483 * 21 20 19 23 23 C 1.33391 * 122.54338 * 90.02238 * 19 18 17 24 24 H 1.08999 * 109.47364 * 348.97884 * 3 2 1 25 25 H 1.09000 * 109.46833 * 228.97728 * 3 2 1 26 26 H 1.08999 * 109.47089 * 59.99614 * 4 3 2 27 27 H 1.08998 * 109.46737 * 300.00136 * 4 3 2 28 28 H 1.09004 * 109.46979 * 29.99989 * 6 5 4 29 29 H 1.08999 * 109.47418 * 150.00132 * 6 5 4 30 30 H 0.97000 * 119.99887 * 180.02562 * 10 9 7 31 31 H 1.08994 * 109.46984 * 60.00404 * 17 15 5 32 32 H 1.08994 * 109.47395 * 299.99944 * 17 15 5 33 33 H 1.08994 * 109.47301 * 60.00425 * 18 17 15 34 34 H 1.09003 * 109.46866 * 299.99861 * 18 17 15 35 35 H 1.08001 * 122.53963 * 0.04211 * 20 19 18 36 36 H 1.07998 * 125.20164 * 180.02562 * 21 20 19 37 37 H 1.08002 * 125.19887 * 359.95301 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.4701 -1.3641 5 7 4.5827 0.4713 -1.3639 6 6 5.3142 1.6717 -0.9514 7 6 5.5648 2.5452 -2.1535 8 1 5.2145 2.2368 -3.1276 9 6 6.2411 3.7382 -2.0100 10 7 6.6671 4.1139 -0.8239 11 14 6.5510 4.8212 -3.5000 12 1 5.2530 5.2152 -4.1044 13 1 7.2926 6.0380 -3.0819 14 1 7.3545 4.0712 -4.4986 15 6 5.2577 -0.6319 -1.7433 16 8 6.4704 -0.6310 -1.7426 17 6 4.5052 -1.8670 -2.1671 18 6 5.5005 -2.9660 -2.5445 19 6 4.7481 -4.2009 -2.9690 20 6 4.3762 -5.1901 -2.0750 21 6 3.7166 -6.2163 -2.6147 22 16 3.5290 -5.9532 -4.3436 23 6 4.3905 -4.4237 -4.2346 24 1 2.9718 -1.0079 0.1965 25 1 2.9709 0.6753 0.7753 26 1 2.7540 1.4786 -1.5605 27 1 2.7547 -0.2046 -2.1394 28 1 4.7245 2.2226 -0.2186 29 1 6.2668 1.3823 -0.5077 30 1 7.1426 4.9533 -0.7228 31 1 3.8782 -1.6330 -3.0274 32 1 3.8791 -2.2113 -1.3441 33 1 6.1272 -3.1999 -1.6840 34 1 6.1269 -2.6219 -3.3675 35 1 4.6026 -5.1351 -1.0204 36 1 3.3497 -7.0750 -2.0721 37 1 4.5946 -3.7635 -5.0646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070870814.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:12 Heat of formation + Delta-G solvation = -4.524464 kcal Electronic energy + Delta-G solvation = -20204.756162 eV Core-core repulsion = 17072.897871 eV Total energy + Delta-G solvation = -3131.858291 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.82174 -39.10470 -37.95781 -36.65606 -34.89643 -33.64516 -32.10861 -30.26753 -29.04452 -26.44442 -25.27589 -24.37595 -22.97497 -19.81698 -19.54420 -18.81429 -18.44728 -18.29566 -17.68208 -17.04741 -16.36845 -16.21166 -15.83773 -15.63182 -14.85007 -14.69963 -14.40102 -14.03068 -13.92492 -13.78989 -13.58643 -13.51720 -13.32398 -13.13021 -12.89900 -12.76641 -12.76011 -12.58024 -12.41941 -12.15563 -11.99022 -11.69811 -11.66110 -11.54429 -10.56774 -10.51523 -9.63187 -9.43162 -9.20421 -8.16293 -6.28589 0.17463 0.84808 1.15864 1.41064 1.43805 1.50518 1.71109 1.82899 1.86206 1.96944 2.35745 2.48808 3.13670 3.18597 3.79318 4.05736 4.09088 4.15857 4.21338 4.31791 4.39759 4.57877 4.68941 4.72896 4.78816 4.87329 4.98184 5.09187 5.18332 5.22185 5.28910 5.37537 5.59540 5.64370 5.68527 5.91377 6.15587 6.62651 6.77935 6.85772 7.36783 7.57520 8.90134 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.003948 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.146405 B = 7090.517777 C = 8314.882219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.246 3.754 3 C -0.038 4.038 4 C 0.114 3.886 5 N -0.599 5.599 6 C 0.259 3.741 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.011 3.989 10 N -0.926 5.926 11 Si 0.957 3.043 12 H -0.264 1.264 13 H -0.282 1.282 14 H -0.279 1.279 15 C 0.501 3.499 16 O -0.591 6.591 17 C -0.121 4.121 18 C -0.041 4.041 19 C -0.101 4.101 20 C -0.140 4.140 21 C -0.210 4.210 22 S 0.088 5.912 23 C -0.223 4.223 24 H 0.138 0.862 25 H 0.119 0.881 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.033 0.967 29 H 0.004 0.996 30 H 0.265 0.735 31 H 0.107 0.893 32 H 0.123 0.877 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.155 0.845 36 H 0.185 0.815 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 -18.963 -2.700 20.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.071 4.071 3 C -0.079 4.079 4 C -0.011 4.011 5 N -0.329 5.329 6 C 0.138 3.862 7 C -0.580 4.580 8 H 0.072 0.928 9 C -0.188 4.188 10 N -0.566 5.566 11 Si 0.782 3.218 12 H -0.188 1.188 13 H -0.208 1.208 14 H -0.205 1.205 15 C 0.291 3.709 16 O -0.471 6.471 17 C -0.161 4.161 18 C -0.081 4.081 19 C -0.114 4.114 20 C -0.170 4.170 21 C -0.346 4.346 22 S 0.351 5.649 23 C -0.358 4.358 24 H 0.156 0.844 25 H 0.137 0.863 26 H 0.099 0.901 27 H 0.124 0.876 28 H 0.051 0.949 29 H 0.022 0.978 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.141 0.859 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.172 0.828 36 H 0.202 0.798 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.868 -19.641 -3.791 22.305 hybrid contribution 1.643 1.888 0.529 2.558 sum -8.224 -17.753 -3.262 19.835 Atomic orbital electron populations 1.81249 1.14439 1.11017 1.10141 1.29171 0.94971 0.91294 0.91685 1.19845 0.80024 1.07225 1.00818 1.21497 0.79139 1.04084 0.96339 1.48110 1.06694 1.13093 1.65051 1.18786 0.91511 0.81503 0.94447 1.21750 1.36444 1.04527 0.95281 0.92848 1.25719 0.95246 0.99226 0.98594 1.70015 1.39175 1.23431 1.23985 0.85632 0.78663 0.77937 0.79569 1.18825 1.20771 1.20474 1.21364 0.87747 0.85287 0.76550 1.90665 1.16671 1.84484 1.55301 1.21718 0.98899 0.90896 1.04573 1.19936 0.95955 0.90364 1.01848 1.18975 1.01657 0.97804 0.92945 1.20315 1.01080 0.93719 1.01885 1.25898 1.07150 1.04605 0.96905 1.84233 1.55976 1.17232 1.07410 1.25698 1.07208 1.01788 1.01098 0.84394 0.86262 0.90088 0.87559 0.94921 0.97800 0.92593 0.87472 0.85932 0.90837 0.92135 0.82754 0.79766 0.81407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.55 18.54 20.00 0.37 -13.18 16 2 C 0.25 5.30 15.43 89.44 1.38 6.68 16 3 C -0.04 -0.67 6.03 28.79 0.17 -0.50 16 4 C 0.11 2.74 5.17 86.38 0.45 3.18 16 5 N -0.60 -21.08 2.46 -826.17 -2.03 -23.11 16 6 C 0.26 12.42 5.16 85.63 0.44 12.87 16 7 C -0.54 -29.16 9.39 25.60 0.24 -28.92 16 8 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 9 C 0.01 0.62 5.46 84.66 0.46 1.09 16 10 N -0.93 -53.70 13.29 21.45 0.28 -53.42 16 11 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 12 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 15 C 0.50 17.51 7.67 87.66 0.67 18.18 16 16 O -0.59 -27.33 15.56 -3.02 -0.05 -27.38 16 17 C -0.12 -2.70 4.24 29.85 0.13 -2.57 16 18 C -0.04 -0.95 4.76 29.85 0.14 -0.81 16 19 C -0.10 -1.99 5.06 -20.92 -0.11 -2.09 16 20 C -0.14 -2.34 9.98 21.22 0.21 -2.13 16 21 C -0.21 -3.10 11.23 66.72 0.75 -2.35 16 22 S 0.09 1.41 23.34 -56.49 -1.32 0.09 16 23 C -0.22 -4.18 10.98 66.72 0.73 -3.45 16 24 H 0.14 1.67 7.22 -2.39 -0.02 1.65 16 25 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.08 2.18 8.07 -2.39 -0.02 2.16 16 27 H 0.11 1.95 6.44 -2.39 -0.02 1.93 16 28 H 0.03 1.56 8.07 -2.38 -0.02 1.54 16 29 H 0.00 0.22 7.42 -2.39 -0.02 0.20 16 30 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.11 2.06 7.40 -2.39 -0.02 2.04 16 32 H 0.12 1.90 7.18 -2.39 -0.02 1.88 16 33 H 0.07 1.83 8.09 -2.39 -0.02 1.81 16 34 H 0.06 1.65 8.08 -2.39 -0.02 1.63 16 35 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.19 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -72.49 340.99 6.04 -66.46 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.08 Total: 5.81 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 5.67 Total: -0.83 kcal Atomic # 7 Polarization: -88.33 SS G_CDS: -1.37 Total: -89.70 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.38 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -1.32 Total: 0.09 kcal Total: -72.49 6.04 -66.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070870814.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.932 kcal (2) G-P(sol) polarization free energy of solvation -72.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds