Wall clock time and date at job start Tue Mar 31 2020 06:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39770 * 120.07332 * 221.78410 * 3 2 1 5 5 C 1.38064 * 120.15772 * 179.97438 * 4 3 2 6 6 C 1.38076 * 120.30994 * 359.74816 * 5 4 3 7 7 C 1.39745 * 120.15145 * 0.50566 * 6 5 4 8 8 C 1.47702 * 120.08187 * 179.76536 * 7 6 5 9 9 O 1.21584 * 120.00019 * 152.11399 * 8 7 6 10 10 N 1.34775 * 120.00032 * 332.11552 * 8 7 6 11 11 C 1.36928 * 120.00242 * 355.11409 * 10 8 7 12 12 H 1.07997 * 119.99737 * 316.09783 * 11 10 8 13 13 C 1.38977 * 120.00141 * 136.09028 * 11 10 8 14 14 N 1.31371 * 119.99833 * 166.48277 * 13 11 10 15 15 Si 1.86796 * 120.00103 * 346.48773 * 13 11 10 16 16 H 1.48504 * 109.47309 * 93.06031 * 15 13 11 17 17 H 1.48502 * 109.47167 * 213.06005 * 15 13 11 18 18 H 1.48506 * 109.47145 * 333.06057 * 15 13 11 19 19 C 1.39714 * 120.00085 * 175.11248 * 10 8 7 20 20 C 1.38969 * 120.08104 * 135.56798 * 19 10 8 21 21 C 1.38075 * 119.92403 * 179.72249 * 20 19 10 22 22 C 1.38315 * 120.07905 * 0.28004 * 21 20 19 23 23 C 1.38317 * 120.15792 * 359.95099 * 22 21 20 24 24 C 1.38082 * 120.07849 * 0.04843 * 23 22 21 25 25 C 1.39330 * 120.07615 * 41.76797 * 3 2 1 26 26 H 1.08004 * 119.92336 * 0.02562 * 4 3 2 27 27 H 1.07991 * 119.84748 * 179.97438 * 5 4 3 28 28 H 1.07997 * 119.92557 * 180.27962 * 6 5 4 29 29 H 0.97007 * 120.00174 * 180.02562 * 14 13 11 30 30 H 1.08007 * 120.04024 * 0.02562 * 20 19 10 31 31 H 1.07996 * 119.96701 * 180.25015 * 21 20 19 32 32 H 1.07994 * 119.92206 * 179.97438 * 22 21 20 33 33 H 1.08001 * 119.95918 * 180.02562 * 23 22 21 34 34 H 1.08000 * 120.03760 * 180.02562 * 24 23 22 35 35 H 1.07994 * 120.15886 * 0.03975 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2680 0.9029 0.8060 5 6 4.6486 0.9046 0.8077 6 6 5.3476 0.0130 0.0184 7 6 4.6609 -0.8911 -0.7963 8 6 5.4102 -1.8407 -1.6439 9 8 4.9145 -2.9096 -1.9439 10 7 6.6434 -1.5223 -2.0848 11 6 7.1616 -0.2804 -1.8316 12 1 6.5462 0.5978 -1.9598 13 6 8.4793 -0.1501 -1.4095 14 7 9.0591 1.0287 -1.4210 15 14 9.4259 -1.6510 -0.8260 16 1 10.1780 -2.2356 -1.9653 17 1 10.3770 -1.2519 0.2423 18 1 8.4752 -2.6588 -0.2912 19 6 7.3931 -2.4594 -2.8002 20 6 8.0772 -2.0750 -3.9471 21 6 8.8218 -3.0026 -4.6484 22 6 8.8826 -4.3143 -4.2139 23 6 8.1991 -4.7015 -3.0754 24 6 7.4525 -3.7794 -2.3691 25 6 3.2667 -0.8983 -0.8031 26 1 2.7276 1.5998 1.4295 27 1 5.1844 1.6042 1.4320 28 1 6.4275 0.0168 0.0280 29 1 9.9790 1.1196 -1.1267 30 1 8.0305 -1.0509 -4.2869 31 1 9.3570 -2.7037 -5.5375 32 1 9.4654 -5.0377 -4.7645 33 1 8.2492 -5.7265 -2.7388 34 1 6.9195 -4.0824 -1.4801 35 1 2.7308 -1.5973 -1.4281 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072680071.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:34 Heat of formation + Delta-G solvation = 66.651948 kcal Electronic energy + Delta-G solvation = -22214.267451 eV Core-core repulsion = 18950.051650 eV Total energy + Delta-G solvation = -3264.215801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.31294 -38.87769 -37.47234 -36.15267 -35.24866 -32.37282 -31.37932 -30.90365 -30.32360 -28.96154 -25.49357 -23.76963 -23.54229 -21.95586 -21.55412 -19.99594 -18.58467 -17.92563 -16.17203 -16.06484 -15.80520 -15.61478 -14.91822 -14.61921 -14.32213 -14.03586 -13.76330 -13.64263 -13.31757 -12.98227 -12.87770 -12.72476 -12.66131 -12.46279 -12.38726 -11.84164 -11.44835 -11.32925 -11.09580 -10.99807 -10.77295 -10.60696 -10.20442 -9.48106 -9.19308 -8.82365 -8.75424 -8.55460 -8.31175 -7.49065 -6.75148 -4.47874 0.99814 1.31803 1.92146 2.00277 2.76344 2.99062 3.06021 3.14616 3.21225 3.56205 3.86051 3.97966 4.16000 4.23520 4.36378 4.79279 5.06047 5.15583 5.40415 5.45995 5.53366 5.64722 5.65360 5.70199 6.02100 6.03616 6.12789 6.16174 6.27234 6.43683 6.58944 6.71276 6.80403 6.90186 7.05971 7.08697 7.09895 7.18161 7.53297 7.59330 7.77442 7.99442 8.57433 8.93134 9.25573 10.29621 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.005710 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.036847 B = 4902.156186 C = 5862.282145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.268 3.732 3 C -0.061 4.061 4 C -0.056 4.056 5 C -0.141 4.141 6 C -0.026 4.026 7 C -0.109 4.109 8 C 0.528 3.472 9 O -0.564 6.564 10 N -0.411 5.411 11 C -0.361 4.361 12 H 0.115 0.885 13 C 0.083 3.917 14 N -0.845 5.845 15 Si 0.858 3.142 16 H -0.259 1.259 17 H -0.284 1.284 18 H -0.253 1.253 19 C 0.155 3.845 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.151 4.151 23 C -0.115 4.115 24 C -0.128 4.128 25 C -0.025 4.025 26 H 0.127 0.873 27 H 0.134 0.866 28 H 0.175 0.825 29 H 0.281 0.719 30 H 0.132 0.868 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.005 -1.973 1.632 2.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.046 4.046 3 C -0.065 4.065 4 C -0.077 4.077 5 C -0.159 4.159 6 C -0.045 4.045 7 C -0.112 4.112 8 C 0.320 3.680 9 O -0.447 6.447 10 N -0.123 5.123 11 C -0.487 4.487 12 H 0.132 0.868 13 C -0.129 4.129 14 N -0.477 5.477 15 Si 0.683 3.317 16 H -0.183 1.183 17 H -0.210 1.210 18 H -0.177 1.177 19 C 0.062 3.938 20 C -0.141 4.141 21 C -0.132 4.132 22 C -0.170 4.170 23 C -0.134 4.134 24 C -0.148 4.148 25 C -0.047 4.047 26 H 0.145 0.855 27 H 0.152 0.848 28 H 0.192 0.808 29 H 0.092 0.908 30 H 0.150 0.850 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.867 -2.317 1.540 3.351 hybrid contribution 1.153 -0.431 0.253 1.257 sum -0.714 -2.749 1.793 3.358 Atomic orbital electron populations 1.81199 1.12142 1.08878 1.09111 1.25740 0.92645 0.93120 0.93113 1.15762 0.84031 1.02364 1.04313 1.21257 0.94673 0.95883 0.95892 1.21164 0.93077 1.00810 1.00853 1.22799 1.04043 0.88881 0.88773 1.19716 0.92562 0.98853 1.00073 1.18414 0.82879 0.86045 0.80641 1.90705 1.69865 1.24759 1.59354 1.41287 1.13436 1.12707 1.44904 1.19120 0.98340 0.82847 1.48383 0.86759 1.25357 0.96411 0.96819 0.94281 1.69664 1.13630 1.23342 1.41068 0.87000 0.81143 0.83263 0.80335 1.18335 1.21027 1.17678 1.18030 0.94830 0.89373 0.91587 1.21094 0.98990 1.00607 0.93414 1.20903 0.99287 0.93254 0.99754 1.20941 1.01902 0.96182 0.97977 1.20861 0.97834 0.98790 0.95884 1.21081 1.00158 0.92803 1.00758 1.21193 0.93128 0.95141 0.95188 0.85461 0.84777 0.80800 0.90818 0.85019 0.86456 0.86868 0.86592 0.86018 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.14 18.54 41.84 0.78 -6.36 16 2 C 0.27 3.96 15.32 -22.47 -0.34 3.61 16 3 C -0.06 -0.86 5.73 -106.99 -0.61 -1.48 16 4 C -0.06 -0.70 9.75 -39.07 -0.38 -1.08 16 5 C -0.14 -1.89 10.01 -39.70 -0.40 -2.28 16 6 C -0.03 -0.44 7.98 -39.08 -0.31 -0.75 16 7 C -0.11 -1.99 5.54 -105.02 -0.58 -2.57 16 8 C 0.53 11.35 7.13 -12.40 -0.09 11.26 16 9 O -0.56 -13.09 15.10 5.29 0.08 -13.01 16 10 N -0.41 -9.07 2.32 -60.02 -0.14 -9.21 16 11 C -0.36 -8.13 5.67 -15.00 -0.09 -8.21 16 12 H 0.12 2.68 7.08 -52.49 -0.37 2.31 16 13 C 0.08 1.91 4.84 -17.47 -0.08 1.82 16 14 N -0.84 -20.39 13.95 55.50 0.77 -19.61 16 15 Si 0.86 18.81 24.51 -169.99 -4.17 14.64 16 16 H -0.26 -5.81 7.11 56.52 0.40 -5.40 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.25 -5.60 6.32 56.52 0.36 -5.24 16 19 C 0.16 3.37 2.86 -83.72 -0.24 3.13 16 20 C -0.12 -2.45 8.46 -39.37 -0.33 -2.78 16 21 C -0.11 -1.97 10.04 -39.61 -0.40 -2.37 16 22 C -0.15 -2.49 10.04 -39.52 -0.40 -2.89 16 23 C -0.12 -2.03 10.04 -39.61 -0.40 -2.42 16 24 C -0.13 -2.63 6.69 -39.36 -0.26 -2.89 16 25 C -0.02 -0.40 9.30 -38.73 -0.36 -0.76 16 26 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 27 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.18 3.27 5.16 -52.49 -0.27 3.00 16 29 H 0.28 6.44 8.31 -40.82 -0.34 6.10 16 30 H 0.13 2.69 7.78 -52.48 -0.41 2.28 16 31 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.12 2.57 7.21 -52.49 -0.38 2.19 16 35 H 0.13 2.15 7.88 -52.49 -0.41 1.74 16 LS Contribution 308.07 15.07 4.64 4.64 Total: -1.00 -26.48 308.07 -6.45 -32.92 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -3.14 Total: 6.65 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -5.27 Total: -10.66 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 1.41 Total: -35.19 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.08 Total: -13.01 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.17 Total: 14.64 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.48 -6.45 -32.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072680071.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.573 kcal (2) G-P(sol) polarization free energy of solvation -26.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds