Wall clock time and date at job start Tue Mar 31 2020 06:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39770 * 120.07332 * 221.78410 * 3 2 1 5 5 C 1.38064 * 120.15772 * 179.97438 * 4 3 2 6 6 C 1.38076 * 120.30994 * 359.74816 * 5 4 3 7 7 C 1.39745 * 120.15145 * 0.50566 * 6 5 4 8 8 C 1.47702 * 120.08187 * 179.76536 * 7 6 5 9 9 O 1.21584 * 120.00019 * 152.11399 * 8 7 6 10 10 N 1.34775 * 120.00032 * 332.11552 * 8 7 6 11 11 C 1.36928 * 120.00242 * 355.11409 * 10 8 7 12 12 H 1.07997 * 119.99737 * 316.09783 * 11 10 8 13 13 C 1.38977 * 120.00141 * 136.09028 * 11 10 8 14 14 N 1.31371 * 119.99833 * 166.48277 * 13 11 10 15 15 Si 1.86796 * 120.00103 * 346.48773 * 13 11 10 16 16 H 1.48504 * 109.47309 * 93.06031 * 15 13 11 17 17 H 1.48502 * 109.47167 * 213.06005 * 15 13 11 18 18 H 1.48506 * 109.47145 * 333.06057 * 15 13 11 19 19 C 1.39714 * 120.00085 * 175.11248 * 10 8 7 20 20 C 1.38969 * 120.08104 * 135.56798 * 19 10 8 21 21 C 1.38075 * 119.92403 * 179.72249 * 20 19 10 22 22 C 1.38315 * 120.07905 * 0.28004 * 21 20 19 23 23 C 1.38317 * 120.15792 * 359.95099 * 22 21 20 24 24 C 1.38082 * 120.07849 * 0.04843 * 23 22 21 25 25 C 1.39330 * 120.07615 * 41.76797 * 3 2 1 26 26 H 1.08004 * 119.92336 * 0.02562 * 4 3 2 27 27 H 1.07991 * 119.84748 * 179.97438 * 5 4 3 28 28 H 1.07997 * 119.92557 * 180.27962 * 6 5 4 29 29 H 0.97007 * 120.00174 * 180.02562 * 14 13 11 30 30 H 1.08007 * 120.04024 * 0.02562 * 20 19 10 31 31 H 1.07996 * 119.96701 * 180.25015 * 21 20 19 32 32 H 1.07994 * 119.92206 * 179.97438 * 22 21 20 33 33 H 1.08001 * 119.95918 * 180.02562 * 23 22 21 34 34 H 1.08000 * 120.03760 * 180.02562 * 24 23 22 35 35 H 1.07994 * 120.15886 * 0.03975 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2680 0.9029 0.8060 5 6 4.6486 0.9046 0.8077 6 6 5.3476 0.0130 0.0184 7 6 4.6609 -0.8911 -0.7963 8 6 5.4102 -1.8407 -1.6439 9 8 4.9145 -2.9096 -1.9439 10 7 6.6434 -1.5223 -2.0848 11 6 7.1616 -0.2804 -1.8316 12 1 6.5462 0.5978 -1.9598 13 6 8.4793 -0.1501 -1.4095 14 7 9.0591 1.0287 -1.4210 15 14 9.4259 -1.6510 -0.8260 16 1 10.1780 -2.2356 -1.9653 17 1 10.3770 -1.2519 0.2423 18 1 8.4752 -2.6588 -0.2912 19 6 7.3931 -2.4594 -2.8002 20 6 8.0772 -2.0750 -3.9471 21 6 8.8218 -3.0026 -4.6484 22 6 8.8826 -4.3143 -4.2139 23 6 8.1991 -4.7015 -3.0754 24 6 7.4525 -3.7794 -2.3691 25 6 3.2667 -0.8983 -0.8031 26 1 2.7276 1.5998 1.4295 27 1 5.1844 1.6042 1.4320 28 1 6.4275 0.0168 0.0280 29 1 9.9790 1.1196 -1.1267 30 1 8.0305 -1.0509 -4.2869 31 1 9.3570 -2.7037 -5.5375 32 1 9.4654 -5.0377 -4.7645 33 1 8.2492 -5.7265 -2.7388 34 1 6.9195 -4.0824 -1.4801 35 1 2.7308 -1.5973 -1.4281 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072680071.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:34 Heat of formation + Delta-G solvation = 53.788126 kcal Electronic energy + Delta-G solvation = -22214.825268 eV Core-core repulsion = 18950.051650 eV Total energy + Delta-G solvation = -3264.773618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.85686 -40.19034 -38.94069 -37.42650 -36.90552 -34.12713 -32.69138 -32.13272 -31.77849 -30.41738 -27.21153 -25.17031 -24.80672 -23.42134 -22.93171 -21.43881 -20.17659 -19.40407 -17.73619 -17.52514 -17.22188 -16.99651 -16.38502 -16.08644 -15.83114 -15.51092 -15.05112 -14.87919 -14.80849 -14.62568 -14.21551 -14.18475 -14.13017 -13.96431 -13.79277 -13.14972 -13.06814 -12.78044 -12.50938 -12.45015 -12.21420 -12.06484 -11.92207 -11.17728 -10.80593 -10.49923 -9.97086 -9.84087 -9.78452 -9.08389 -8.54701 -6.25790 -0.23588 0.03199 0.49307 0.52973 1.25713 1.35332 1.43710 1.55438 1.71613 2.11842 2.21028 2.40677 2.76032 2.87530 2.93204 3.17335 3.81626 3.94067 4.08095 4.14229 4.23393 4.32712 4.36499 4.49767 4.60420 4.70111 4.75744 4.80533 4.94401 5.15519 5.24667 5.40347 5.48708 5.54705 5.56703 5.61565 5.63476 5.87174 6.00079 6.05521 6.31347 6.39840 6.83515 7.21822 7.58072 8.53092 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.005710 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.036847 B = 4902.156186 C = 5862.282145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.287 3.713 3 C -0.055 4.055 4 C -0.030 4.030 5 C -0.129 4.129 6 C -0.037 4.037 7 C -0.135 4.135 8 C 0.521 3.479 9 O -0.592 6.592 10 N -0.421 5.421 11 C -0.343 4.343 12 H 0.100 0.900 13 C 0.064 3.936 14 N -0.875 5.875 15 Si 0.895 3.105 16 H -0.264 1.264 17 H -0.282 1.282 18 H -0.264 1.264 19 C 0.125 3.875 20 C -0.142 4.142 21 C -0.111 4.111 22 C -0.141 4.141 23 C -0.115 4.115 24 C -0.149 4.149 25 C -0.026 4.026 26 H 0.170 0.830 27 H 0.166 0.834 28 H 0.151 0.849 29 H 0.284 0.716 30 H 0.119 0.881 31 H 0.151 0.849 32 H 0.158 0.842 33 H 0.148 0.852 34 H 0.104 0.896 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.210 -2.122 1.925 2.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.027 4.027 3 C -0.058 4.058 4 C -0.050 4.050 5 C -0.146 4.146 6 C -0.055 4.055 7 C -0.138 4.138 8 C 0.314 3.686 9 O -0.477 6.477 10 N -0.134 5.134 11 C -0.469 4.469 12 H 0.117 0.883 13 C -0.144 4.144 14 N -0.509 5.509 15 Si 0.720 3.280 16 H -0.189 1.189 17 H -0.209 1.209 18 H -0.188 1.188 19 C 0.032 3.968 20 C -0.162 4.162 21 C -0.130 4.130 22 C -0.159 4.159 23 C -0.134 4.134 24 C -0.170 4.170 25 C -0.048 4.048 26 H 0.187 0.813 27 H 0.183 0.817 28 H 0.168 0.832 29 H 0.094 0.906 30 H 0.137 0.863 31 H 0.169 0.831 32 H 0.176 0.824 33 H 0.166 0.834 34 H 0.122 0.878 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.643 -2.467 1.830 3.484 hybrid contribution 1.019 -0.445 0.121 1.119 sum -0.624 -2.912 1.950 3.560 Atomic orbital electron populations 1.81231 1.12833 1.09699 1.09934 1.25623 0.92388 0.92342 0.92337 1.15734 0.83659 1.02249 1.04172 1.21660 0.94197 0.94814 0.94353 1.21428 0.93598 0.99755 0.99847 1.22583 1.03079 0.89944 0.89944 1.19562 0.93242 0.99786 1.01214 1.18964 0.82758 0.86377 0.80516 1.90655 1.70340 1.26044 1.60673 1.41390 1.13807 1.12706 1.45495 1.18882 0.97897 0.82734 1.47434 0.88284 1.25551 0.96799 0.97533 0.94508 1.69690 1.14091 1.24139 1.42975 0.86444 0.80102 0.81774 0.79689 1.18852 1.20853 1.18799 1.18316 0.95862 0.89924 0.92648 1.21187 1.00312 1.00853 0.93866 1.21352 0.98158 0.93259 1.00206 1.21458 1.00748 0.96515 0.97168 1.21305 0.96552 0.99744 0.95768 1.21139 1.01481 0.93203 1.01140 1.21111 0.92298 0.95671 0.95689 0.81269 0.81674 0.83175 0.90602 0.86325 0.83129 0.82416 0.83394 0.87774 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.29 18.54 19.00 0.35 -13.94 16 2 C 0.29 7.92 15.32 88.33 1.35 9.27 16 3 C -0.05 -1.44 5.73 -21.40 -0.12 -1.56 16 4 C -0.03 -0.64 9.75 22.60 0.22 -0.42 16 5 C -0.13 -3.12 10.01 22.19 0.22 -2.90 16 6 C -0.04 -1.23 7.98 22.60 0.18 -1.05 16 7 C -0.14 -5.06 5.54 -20.13 -0.11 -5.17 16 8 C 0.52 23.46 7.13 86.74 0.62 24.08 16 9 O -0.59 -28.87 15.10 -3.98 -0.06 -28.93 16 10 N -0.42 -19.40 2.32 -462.06 -1.07 -20.47 16 11 C -0.34 -16.05 5.67 84.07 0.48 -15.57 16 12 H 0.10 4.86 7.08 -2.91 -0.02 4.84 16 13 C 0.06 3.05 4.84 84.94 0.41 3.46 16 14 N -0.87 -43.00 13.95 21.67 0.30 -42.69 16 15 Si 0.89 39.46 24.51 68.60 1.68 41.14 16 16 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.26 -11.95 6.32 99.48 0.63 -11.32 16 19 C 0.13 5.56 2.86 38.24 0.11 5.67 16 20 C -0.14 -5.79 8.46 22.41 0.19 -5.60 16 21 C -0.11 -3.65 10.04 22.25 0.22 -3.42 16 22 C -0.14 -4.17 10.04 22.31 0.22 -3.94 16 23 C -0.12 -3.85 10.04 22.25 0.22 -3.62 16 24 C -0.15 -6.22 6.69 22.41 0.15 -6.07 16 25 C -0.03 -0.84 9.30 22.82 0.21 -0.63 16 26 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 27 H 0.17 3.03 8.06 -2.92 -0.02 3.01 16 28 H 0.15 5.83 5.16 -2.91 -0.02 5.81 16 29 H 0.28 13.18 8.31 -92.70 -0.77 12.41 16 30 H 0.12 5.01 7.78 -2.91 -0.02 4.99 16 31 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 32 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 34 H 0.10 4.59 7.21 -2.91 -0.02 4.57 16 35 H 0.13 4.24 7.88 -2.91 -0.02 4.21 16 Total: -1.00 -59.86 308.07 6.83 -53.03 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 1.05 Total: 19.35 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 4.58 Total: -7.47 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -0.42 Total: -77.11 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.06 Total: -28.93 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 1.68 Total: 41.14 kcal Total: -59.86 6.83 -53.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072680071.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.813 kcal (2) G-P(sol) polarization free energy of solvation -59.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds