Wall clock time and date at job start Tue Mar 31 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39699 * 120.20294 * 22.80035 * 3 2 1 5 5 C 1.37823 * 119.91395 * 180.02562 * 4 3 2 6 6 C 1.38539 * 120.33790 * 359.97438 * 5 4 3 7 7 C 1.38057 * 120.40498 * 0.02562 * 6 5 4 8 8 C 1.38817 * 120.07692 * 359.97438 * 7 6 5 9 9 N 1.39317 * 120.16513 * 180.02562 * 8 7 6 10 10 C 1.34780 * 119.99726 * 20.14807 * 9 8 7 11 11 O 1.21553 * 120.00069 * 5.38261 * 10 9 8 12 12 C 1.47851 * 119.99524 * 185.39214 * 10 9 8 13 13 C 1.39938 * 120.02647 * 359.72083 * 12 10 9 14 14 C 1.38328 * 120.35042 * 179.71972 * 13 12 10 15 15 C 1.37751 * 120.41722 * 0.55979 * 14 13 12 16 16 C 1.40759 * 120.04236 * 359.72025 * 15 14 13 17 17 C 1.41434 * 120.17687 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00507 * 152.09158 * 17 16 15 19 19 C 1.39939 * 119.99948 * 332.08884 * 17 16 15 20 20 N 1.30828 * 120.00177 * 166.66521 * 19 17 16 21 21 Si 1.86805 * 119.99927 * 346.65771 * 19 17 16 22 22 H 1.48502 * 109.46685 * 95.49837 * 21 19 17 23 23 H 1.48503 * 109.47170 * 215.49336 * 21 19 17 24 24 H 1.48493 * 109.47051 * 335.49913 * 21 19 17 25 25 C 1.39014 * 120.02201 * 179.97438 * 12 10 9 26 26 H 1.07998 * 120.03676 * 359.97438 * 4 3 2 27 27 H 1.08010 * 119.82992 * 179.72660 * 5 4 3 28 28 H 1.07996 * 119.79676 * 179.97438 * 6 5 4 29 29 H 1.08008 * 119.96100 * 180.02562 * 7 6 5 30 30 H 0.96993 * 119.99806 * 200.14068 * 9 8 7 31 31 H 1.07996 * 119.82264 * 0.02562 * 13 12 10 32 32 H 1.07997 * 119.78806 * 180.25776 * 14 13 12 33 33 H 1.07995 * 119.98151 * 179.74425 * 15 14 13 34 34 H 0.97001 * 120.00457 * 180.02562 * 20 19 17 35 35 H 1.07995 * 120.20579 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2713 -1.1121 -0.4679 5 6 4.6495 -1.1052 -0.4647 6 6 5.3427 0.0006 0.0000 7 6 4.6614 1.1075 0.4655 8 6 3.2733 1.1189 0.4699 9 7 2.5839 2.2351 0.9387 10 6 3.2029 3.4306 1.0050 11 8 4.3290 3.5571 0.5654 12 6 2.5120 4.5880 1.6125 13 6 1.2133 4.4442 2.1136 14 6 0.5628 5.5211 2.6886 15 6 1.1809 6.7498 2.7644 16 6 2.4847 6.9151 2.2605 17 6 3.1222 8.1753 2.3373 18 1 4.1994 8.2333 2.3894 19 6 2.3572 9.3470 2.3457 20 7 2.9092 10.4863 2.6758 21 14 0.5478 9.2845 1.8854 22 1 -0.2729 9.1741 3.1181 23 1 0.1797 10.5240 1.1550 24 1 0.2984 8.1058 1.0174 25 6 3.1500 5.8211 1.6816 26 1 2.7356 -1.9767 -0.8308 27 1 5.1919 -1.9680 -0.8226 28 1 6.4227 -0.0037 -0.0010 29 1 5.2091 1.9658 0.8257 30 1 1.6586 2.1519 1.2173 31 1 0.7182 3.4862 2.0555 32 1 -0.4378 5.3989 3.0762 33 1 0.6649 7.5868 3.2110 34 1 2.3789 11.2985 2.6820 35 1 4.1508 5.9375 1.2929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076709284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:48 Heat of formation + Delta-G solvation = 46.250840 kcal Electronic energy + Delta-G solvation = -21186.565698 eV Core-core repulsion = 17921.465238 eV Total energy + Delta-G solvation = -3265.100459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.82548 -38.87866 -37.49468 -36.53724 -34.90606 -33.80687 -31.45704 -31.22194 -30.30601 -29.39312 -25.43449 -24.20890 -23.98569 -22.28751 -20.86559 -20.19706 -19.32517 -18.06403 -17.38765 -16.56314 -15.99479 -15.38616 -15.34656 -14.80662 -14.75328 -14.31396 -14.13882 -13.85831 -13.71426 -13.28650 -13.02568 -12.87902 -12.85056 -12.58506 -12.20567 -11.92319 -11.76164 -11.69417 -11.19055 -10.89854 -10.77404 -10.60511 -10.03392 -9.83160 -9.60431 -9.30051 -9.10879 -8.28137 -7.99294 -7.90409 -7.10078 -4.68012 0.57203 1.10993 1.74253 2.39484 2.46832 2.81540 2.96999 2.98472 3.11381 3.17496 3.29014 3.70534 3.77742 3.83305 4.34931 4.60081 4.76297 4.97219 5.11528 5.19955 5.28414 5.30141 5.69080 5.72446 5.86633 5.98625 6.04480 6.18968 6.24369 6.33415 6.51024 6.53220 6.78032 6.82751 7.03231 7.20625 7.28531 7.33829 7.39950 7.60485 7.78943 8.15144 8.21887 8.38103 8.58433 9.91493 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027130 B = 0.003683 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.825167 B = 7600.659979 C = 8436.174864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.253 3.747 3 C -0.081 4.081 4 C -0.047 4.047 5 C -0.153 4.153 6 C -0.064 4.064 7 C -0.147 4.147 8 C 0.216 3.784 9 N -0.671 5.671 10 C 0.569 3.431 11 O -0.515 6.515 12 C -0.113 4.113 13 C -0.218 4.218 14 C -0.079 4.079 15 C -0.218 4.218 16 C 0.080 3.920 17 C -0.434 4.434 18 H 0.096 0.904 19 C 0.080 3.920 20 N -0.801 5.801 21 Si 0.914 3.086 22 H -0.270 1.270 23 H -0.290 1.290 24 H -0.240 1.240 25 C -0.129 4.129 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.167 0.833 30 H 0.413 0.587 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.288 0.712 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.299 -17.160 -3.586 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.062 4.062 3 C -0.088 4.088 4 C -0.068 4.068 5 C -0.172 4.172 6 C -0.083 4.083 7 C -0.167 4.167 8 C 0.115 3.885 9 N -0.313 5.313 10 C 0.362 3.638 11 O -0.391 6.391 12 C -0.116 4.116 13 C -0.239 4.239 14 C -0.097 4.097 15 C -0.238 4.238 16 C 0.077 3.923 17 C -0.462 4.462 18 H 0.114 0.886 19 C -0.140 4.140 20 N -0.425 5.425 21 Si 0.741 3.259 22 H -0.196 1.196 23 H -0.218 1.218 24 H -0.163 1.163 25 C -0.150 4.150 26 H 0.151 0.849 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.184 0.816 30 H 0.251 0.749 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.360 -16.646 -3.801 17.078 hybrid contribution -0.958 0.102 0.033 0.964 sum -0.598 -16.543 -3.767 16.977 Atomic orbital electron populations 1.81279 1.11814 1.07231 1.09044 1.25632 0.92595 0.94108 0.93825 1.15731 0.84197 0.97595 1.11263 1.20917 0.94296 0.95752 0.95864 1.21014 0.93472 0.99361 1.03348 1.21350 1.00543 0.91954 0.94479 1.21782 0.91793 1.00929 1.02213 1.17863 0.91969 0.85518 0.93109 1.43676 1.16660 1.07457 1.63532 1.19007 0.85599 0.82120 0.77094 1.90624 1.18775 1.83766 1.45983 1.19239 0.95581 0.92590 1.04203 1.20348 0.95212 0.98081 1.10210 1.20479 0.98036 0.93052 0.98118 1.21122 0.98080 0.96657 1.07919 1.17694 0.91396 0.93491 0.89736 1.19587 0.96816 0.88467 1.41289 0.88646 1.26215 1.01499 0.94833 0.91419 1.69642 1.39581 1.00361 1.32882 0.86282 0.81121 0.78454 0.80059 1.19629 1.21793 1.16312 1.21233 1.00513 0.91195 1.02020 0.84926 0.85114 0.84952 0.81640 0.74897 0.88815 0.88045 0.87979 0.90100 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.03 18.54 41.84 0.78 -5.26 16 2 C 0.25 3.19 14.20 -22.47 -0.32 2.87 16 3 C -0.08 -0.91 5.75 -106.64 -0.61 -1.52 16 4 C -0.05 -0.40 9.75 -39.19 -0.38 -0.78 16 5 C -0.15 -1.17 10.02 -39.62 -0.40 -1.56 16 6 C -0.06 -0.58 10.03 -39.54 -0.40 -0.98 16 7 C -0.15 -1.82 8.77 -39.43 -0.35 -2.17 16 8 C 0.22 2.83 6.50 -83.46 -0.54 2.28 16 9 N -0.67 -9.93 5.15 -10.52 -0.05 -9.98 16 10 C 0.57 10.26 7.61 -12.32 -0.09 10.16 16 11 O -0.51 -10.01 13.24 5.32 0.07 -9.94 16 12 C -0.11 -2.28 5.87 -105.04 -0.62 -2.89 16 13 C -0.22 -4.13 9.55 -38.91 -0.37 -4.50 16 14 C -0.08 -1.57 10.01 -39.73 -0.40 -1.97 16 15 C -0.22 -4.92 6.90 -38.81 -0.27 -5.19 16 16 C 0.08 1.93 5.20 -106.87 -0.56 1.37 16 17 C -0.43 -11.20 9.61 -37.73 -0.36 -11.56 16 18 H 0.10 2.58 8.06 -52.49 -0.42 2.15 16 19 C 0.08 2.01 5.47 -17.34 -0.09 1.92 16 20 N -0.80 -20.53 13.93 55.55 0.77 -19.75 16 21 Si 0.91 19.84 24.35 -169.99 -4.14 15.70 16 22 H -0.27 -5.64 6.77 56.52 0.38 -5.26 16 23 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.24 -5.31 6.44 56.52 0.36 -4.95 16 25 C -0.13 -2.92 9.34 -38.44 -0.36 -3.28 16 26 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 27 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 28 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 29 H 0.17 2.38 5.43 -52.48 -0.29 2.09 16 30 H 0.41 5.68 5.82 -40.82 -0.24 5.44 16 31 H 0.09 1.49 6.39 -52.49 -0.34 1.15 16 32 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.10 2.28 4.10 -52.49 -0.22 2.07 16 34 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 35 H 0.12 2.68 7.64 -52.49 -0.40 2.27 16 LS Contribution 308.09 15.07 4.64 4.64 Total: -1.00 -27.62 308.09 -6.83 -34.44 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -2.78 Total: 7.95 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -6.12 Total: -17.81 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 1.49 Total: -34.99 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.14 Total: 15.70 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.62 -6.83 -34.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076709284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.693 kcal (2) G-P(sol) polarization free energy of solvation -27.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds