Wall clock time and date at job start Tue Mar 31 2020 06:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39699 * 120.20294 * 22.80035 * 3 2 1 5 5 C 1.37823 * 119.91395 * 180.02562 * 4 3 2 6 6 C 1.38539 * 120.33790 * 359.97438 * 5 4 3 7 7 C 1.38057 * 120.40498 * 0.02562 * 6 5 4 8 8 C 1.38817 * 120.07692 * 359.97438 * 7 6 5 9 9 N 1.39317 * 120.16513 * 180.02562 * 8 7 6 10 10 C 1.34780 * 119.99726 * 20.14807 * 9 8 7 11 11 O 1.21553 * 120.00069 * 5.38261 * 10 9 8 12 12 C 1.47851 * 119.99524 * 185.39214 * 10 9 8 13 13 C 1.39938 * 120.02647 * 359.72083 * 12 10 9 14 14 C 1.38328 * 120.35042 * 179.71972 * 13 12 10 15 15 C 1.37751 * 120.41722 * 0.55979 * 14 13 12 16 16 C 1.40759 * 120.04236 * 359.72025 * 15 14 13 17 17 C 1.41434 * 120.17687 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00507 * 152.09158 * 17 16 15 19 19 C 1.39939 * 119.99948 * 332.08884 * 17 16 15 20 20 N 1.30828 * 120.00177 * 166.66521 * 19 17 16 21 21 Si 1.86805 * 119.99927 * 346.65771 * 19 17 16 22 22 H 1.48502 * 109.46685 * 95.49837 * 21 19 17 23 23 H 1.48503 * 109.47170 * 215.49336 * 21 19 17 24 24 H 1.48493 * 109.47051 * 335.49913 * 21 19 17 25 25 C 1.39014 * 120.02201 * 179.97438 * 12 10 9 26 26 H 1.07998 * 120.03676 * 359.97438 * 4 3 2 27 27 H 1.08010 * 119.82992 * 179.72660 * 5 4 3 28 28 H 1.07996 * 119.79676 * 179.97438 * 6 5 4 29 29 H 1.08008 * 119.96100 * 180.02562 * 7 6 5 30 30 H 0.96993 * 119.99806 * 200.14068 * 9 8 7 31 31 H 1.07996 * 119.82264 * 0.02562 * 13 12 10 32 32 H 1.07997 * 119.78806 * 180.25776 * 14 13 12 33 33 H 1.07995 * 119.98151 * 179.74425 * 15 14 13 34 34 H 0.97001 * 120.00457 * 180.02562 * 20 19 17 35 35 H 1.07995 * 120.20579 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2713 -1.1121 -0.4679 5 6 4.6495 -1.1052 -0.4647 6 6 5.3427 0.0006 0.0000 7 6 4.6614 1.1075 0.4655 8 6 3.2733 1.1189 0.4699 9 7 2.5839 2.2351 0.9387 10 6 3.2029 3.4306 1.0050 11 8 4.3290 3.5571 0.5654 12 6 2.5120 4.5880 1.6125 13 6 1.2133 4.4442 2.1136 14 6 0.5628 5.5211 2.6886 15 6 1.1809 6.7498 2.7644 16 6 2.4847 6.9151 2.2605 17 6 3.1222 8.1753 2.3373 18 1 4.1994 8.2333 2.3894 19 6 2.3572 9.3470 2.3457 20 7 2.9092 10.4863 2.6758 21 14 0.5478 9.2845 1.8854 22 1 -0.2729 9.1741 3.1181 23 1 0.1797 10.5240 1.1550 24 1 0.2984 8.1058 1.0174 25 6 3.1500 5.8211 1.6816 26 1 2.7356 -1.9767 -0.8308 27 1 5.1919 -1.9680 -0.8226 28 1 6.4227 -0.0037 -0.0010 29 1 5.2091 1.9658 0.8257 30 1 1.6586 2.1519 1.2173 31 1 0.7182 3.4862 2.0555 32 1 -0.4378 5.3989 3.0762 33 1 0.6649 7.5868 3.2110 34 1 2.3789 11.2985 2.6820 35 1 4.1508 5.9375 1.2929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076709284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:47 Heat of formation + Delta-G solvation = 30.686606 kcal Electronic energy + Delta-G solvation = -21187.240614 eV Core-core repulsion = 17921.465238 eV Total energy + Delta-G solvation = -3265.775375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.01080 -40.08618 -39.04855 -37.52181 -36.12092 -35.58601 -32.81447 -32.29361 -31.96038 -30.50814 -27.21179 -25.54221 -24.86951 -23.50510 -22.55054 -21.58441 -20.41680 -19.45697 -18.50173 -18.13665 -17.54980 -16.58323 -16.52929 -16.25464 -15.97113 -15.61813 -15.37895 -15.11896 -14.85147 -14.61637 -14.52261 -14.18554 -13.98845 -13.91372 -13.58909 -13.39206 -12.95618 -12.72720 -12.70350 -12.48141 -12.32826 -11.77869 -11.73232 -11.61182 -11.20860 -10.79352 -9.94210 -9.73516 -9.71077 -9.14436 -8.94851 -6.60935 -0.35361 0.03529 0.46221 0.67267 1.22675 1.39184 1.45818 1.49612 1.77762 1.79678 1.92509 2.07223 2.57102 2.79445 2.92540 3.38136 3.53772 3.86687 4.11878 4.17396 4.26952 4.33068 4.44411 4.45329 4.48745 4.78011 4.82668 4.93565 5.03418 5.14437 5.30880 5.35070 5.39059 5.52332 5.57306 5.62705 5.77231 5.93536 5.97554 6.17708 6.24974 6.37504 6.56862 6.68508 6.86735 8.13374 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027130 B = 0.003683 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.825167 B = 7600.659979 C = 8436.174864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.271 3.729 3 C -0.083 4.083 4 C -0.037 4.037 5 C -0.133 4.133 6 C -0.057 4.057 7 C -0.168 4.168 8 C 0.187 3.813 9 N -0.660 5.660 10 C 0.570 3.430 11 O -0.537 6.537 12 C -0.115 4.115 13 C -0.191 4.191 14 C -0.081 4.081 15 C -0.223 4.223 16 C 0.066 3.934 17 C -0.477 4.477 18 H 0.056 0.944 19 C 0.043 3.957 20 N -0.847 5.847 21 Si 0.968 3.032 22 H -0.250 1.250 23 H -0.281 1.281 24 H -0.246 1.246 25 C -0.154 4.154 26 H 0.164 0.836 27 H 0.172 0.828 28 H 0.157 0.843 29 H 0.139 0.861 30 H 0.418 0.582 31 H 0.135 0.865 32 H 0.144 0.856 33 H 0.106 0.894 34 H 0.296 0.704 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.545 -21.467 -4.399 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.044 4.044 3 C -0.089 4.089 4 C -0.058 4.058 5 C -0.151 4.151 6 C -0.076 4.076 7 C -0.188 4.188 8 C 0.088 3.912 9 N -0.303 5.303 10 C 0.361 3.639 11 O -0.415 6.415 12 C -0.119 4.119 13 C -0.210 4.210 14 C -0.099 4.099 15 C -0.243 4.243 16 C 0.063 3.937 17 C -0.507 4.507 18 H 0.075 0.925 19 C -0.171 4.171 20 N -0.473 5.473 21 Si 0.791 3.209 22 H -0.176 1.176 23 H -0.208 1.208 24 H -0.170 1.170 25 C -0.175 4.175 26 H 0.182 0.818 27 H 0.190 0.810 28 H 0.175 0.825 29 H 0.156 0.844 30 H 0.256 0.744 31 H 0.152 0.848 32 H 0.161 0.839 33 H 0.123 0.877 34 H 0.107 0.893 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.486 -21.001 -4.611 21.552 hybrid contribution -0.283 1.025 0.230 1.088 sum -1.769 -19.976 -4.381 20.527 Atomic orbital electron populations 1.81300 1.12793 1.08382 1.10383 1.25784 0.92687 0.93086 0.92796 1.15819 0.83466 0.97866 1.11764 1.21367 0.94868 0.95459 0.94058 1.21479 0.93189 0.99637 1.00843 1.21674 1.01900 0.91122 0.92909 1.21667 0.91731 1.01610 1.03793 1.18000 0.92322 0.85562 0.95324 1.43368 1.16654 1.06974 1.63283 1.18637 0.85287 0.82689 0.77243 1.90635 1.19622 1.84260 1.46957 1.19514 0.96223 0.92553 1.03567 1.20881 0.94072 0.99549 1.06527 1.20954 0.99748 0.91827 0.97335 1.21322 0.97270 0.98191 1.07492 1.17779 0.92579 0.93033 0.90271 1.19526 0.95327 0.90400 1.45404 0.92527 1.26906 1.05191 0.94095 0.90955 1.69679 1.41266 1.01114 1.35231 0.85475 0.76746 0.78370 0.80304 1.17564 1.20808 1.16959 1.21187 1.00389 0.92473 1.03411 0.81811 0.81045 0.82544 0.84352 0.74373 0.84774 0.83868 0.87661 0.89326 0.87998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -12.00 18.54 19.00 0.35 -11.64 16 2 C 0.27 6.09 14.20 88.33 1.25 7.34 16 3 C -0.08 -1.60 5.75 -21.17 -0.12 -1.72 16 4 C -0.04 -0.45 9.75 22.52 0.22 -0.23 16 5 C -0.13 -1.33 10.02 22.24 0.22 -1.11 16 6 C -0.06 -0.84 10.03 22.30 0.22 -0.62 16 7 C -0.17 -3.96 8.77 22.37 0.20 -3.76 16 8 C 0.19 4.57 6.50 38.60 0.25 4.82 16 9 N -0.66 -18.62 5.15 -305.46 -1.57 -20.19 16 10 C 0.57 20.51 7.61 86.79 0.66 21.17 16 11 O -0.54 -21.55 13.24 -3.88 -0.05 -21.60 16 12 C -0.12 -4.62 5.87 -20.13 -0.12 -4.74 16 13 C -0.19 -6.66 9.55 22.70 0.22 -6.44 16 14 C -0.08 -2.96 10.01 22.18 0.22 -2.74 16 15 C -0.22 -9.89 6.90 22.77 0.16 -9.73 16 16 C 0.07 3.31 5.20 -21.32 -0.11 3.19 16 17 C -0.48 -26.59 9.61 23.47 0.23 -26.37 16 18 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 19 C 0.04 2.28 5.47 85.25 0.47 2.75 16 20 N -0.85 -45.93 13.93 21.83 0.30 -45.63 16 21 Si 0.97 41.17 24.35 68.60 1.67 42.84 16 22 H -0.25 -9.78 6.77 99.48 0.67 -9.11 16 23 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 24 H -0.25 -10.56 6.44 99.48 0.64 -9.92 16 25 C -0.15 -7.30 9.34 23.01 0.21 -7.09 16 26 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 27 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16 28 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 29 H 0.14 4.07 5.43 -2.91 -0.02 4.05 16 30 H 0.42 10.47 5.82 -92.71 -0.54 9.93 16 31 H 0.13 3.64 6.39 -2.91 -0.02 3.62 16 32 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 33 H 0.11 4.57 4.10 -2.91 -0.01 4.56 16 34 H 0.30 14.34 8.30 -92.71 -0.77 13.58 16 35 H 0.10 5.03 7.64 -2.91 -0.02 5.01 16 Total: -1.00 -65.42 308.09 5.41 -60.01 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.53 Total: 21.48 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 4.18 Total: -25.28 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -0.92 Total: -77.46 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.05 Total: -21.60 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.67 Total: 42.84 kcal Total: -65.42 5.41 -60.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076709284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.701 kcal (2) G-P(sol) polarization free energy of solvation -65.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds