Wall clock time and date at job start Tue Mar 31 2020 06:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29021 * 124.91826 * 2 1 4 4 C 1.31780 * 117.12527 * 180.02562 * 3 2 1 5 5 C 1.50706 * 122.74932 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.46652 * 275.73800 * 5 4 3 7 7 C 1.46897 * 111.00303 * 288.06227 * 6 5 4 8 8 C 1.50699 * 109.47671 * 170.00149 * 7 6 5 9 9 H 1.08000 * 119.99648 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00502 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99511 * 359.97438 * 10 8 7 12 12 Si 1.86790 * 120.00061 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47419 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47450 * 119.99786 * 12 10 8 15 15 H 1.48505 * 109.47266 * 239.99572 * 12 10 8 16 16 C 1.46903 * 110.99924 * 164.11093 * 6 5 4 17 17 C 1.50704 * 109.46985 * 288.26346 * 16 6 5 18 18 C 1.34518 * 125.78900 * 95.97381 * 17 16 6 19 19 C 1.41380 * 106.83713 * 180.02562 * 18 17 16 20 20 C 1.34514 * 106.84568 * 0.02562 * 19 18 17 21 21 O 1.34301 * 108.41720 * 359.97438 * 20 19 18 22 22 C 1.33638 * 114.50039 * 0.23008 * 4 3 2 23 23 S 1.70978 * 124.91466 * 180.02562 * 2 1 3 24 24 H 1.08992 * 109.46936 * 95.03862 * 1 2 3 25 25 H 1.09003 * 109.46876 * 215.04246 * 1 2 3 26 26 H 1.09003 * 109.46952 * 335.03672 * 1 2 3 27 27 H 1.08998 * 109.47304 * 155.74308 * 5 4 3 28 28 H 1.08994 * 109.47245 * 35.73472 * 5 4 3 29 29 H 1.09002 * 109.47298 * 290.00486 * 7 6 5 30 30 H 1.09002 * 109.46896 * 50.00177 * 7 6 5 31 31 H 0.97000 * 119.99572 * 180.02562 * 11 10 8 32 32 H 1.09004 * 109.47217 * 168.26508 * 16 6 5 33 33 H 1.08998 * 109.46944 * 48.26220 * 16 6 5 34 34 H 1.08000 * 126.57802 * 0.06409 * 18 17 16 35 35 H 1.08002 * 126.57833 * 179.97438 * 19 18 17 36 36 H 1.07998 * 125.79037 * 180.25665 * 20 19 18 37 37 H 1.08002 * 126.03357 * 179.76968 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8792 -0.0005 5 6 4.5308 2.0245 -0.0012 6 7 4.7432 2.4863 -1.3794 7 6 5.5337 1.5131 -2.1449 8 6 5.5242 1.8937 -3.6030 9 1 4.9851 2.7711 -3.9284 10 6 6.2036 1.1218 -4.5215 11 7 6.8603 0.0536 -4.1250 12 14 6.1923 1.5941 -6.3287 13 1 5.3873 2.8284 -6.5128 14 1 7.5842 1.8377 -6.7854 15 1 5.5960 0.4915 -7.1248 16 6 5.3774 3.8112 -1.3989 17 6 4.3821 4.8511 -0.9526 18 6 4.2590 5.3378 0.2954 19 6 3.2087 6.2837 0.2643 20 6 2.7524 6.3181 -1.0006 21 8 3.4670 5.4485 -1.7333 22 6 3.9354 -0.4007 -0.0059 23 16 2.4856 -1.4020 -0.0006 24 1 -0.3633 -0.0903 -1.0236 25 1 -0.3633 -0.8414 0.5901 26 1 -0.3633 0.9317 0.4337 27 1 5.4791 1.6917 0.4207 28 1 4.1333 2.8429 0.5990 29 1 6.5598 1.5088 -1.7772 30 1 5.1010 0.5197 -2.0259 31 1 7.3386 -0.4892 -4.7711 32 1 5.7119 4.0391 -2.4110 33 1 6.2333 3.8142 -0.7240 34 1 4.8497 5.0598 1.1557 35 1 2.8424 6.8662 1.0967 36 1 1.9507 6.9427 -1.3661 37 1 4.9545 -0.7581 -0.0107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078666657.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:01 Heat of formation + Delta-G solvation = 67.304572 kcal Electronic energy + Delta-G solvation = -20915.483555 eV Core-core repulsion = 17786.740005 eV Total energy + Delta-G solvation = -3128.743550 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.09402 -39.54718 -36.66565 -32.78772 -32.55165 -32.12416 -30.05006 -28.37653 -27.43685 -26.05488 -24.10633 -22.39435 -21.30891 -20.84631 -19.83958 -19.29361 -17.20053 -16.90915 -16.43694 -15.63192 -15.08962 -14.97568 -14.66712 -14.27864 -13.91187 -13.70017 -13.22638 -13.16785 -12.50524 -12.40203 -12.36234 -12.22490 -12.16486 -12.00710 -11.83090 -11.42943 -10.89209 -10.76573 -10.68713 -10.47590 -9.94160 -9.52638 -9.26865 -9.23399 -8.97699 -8.48570 -8.33813 -8.03215 -7.37232 -6.06455 -4.07085 1.10396 1.73023 2.08804 2.18170 2.97559 3.22055 3.29786 3.37606 3.43839 3.48628 4.39167 4.41967 4.99789 5.17621 5.23604 5.30266 5.37591 5.44150 5.47019 5.54583 5.62750 5.71219 5.82583 5.94737 6.00257 6.15713 6.18038 6.23986 6.32130 6.55905 6.57097 6.88753 7.16200 7.21207 7.61508 7.76277 7.98669 8.08723 8.21615 8.46214 9.00695 9.57323 11.04389 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.008759 B = 0.007381 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.020008 B = 3792.574682 C = 6090.949774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.039 3.961 3 N -0.450 5.450 4 C 0.093 3.907 5 C 0.122 3.878 6 N -0.524 5.524 7 C 0.191 3.809 8 C -0.508 4.508 9 H 0.065 0.935 10 C 0.058 3.942 11 N -0.898 5.898 12 Si 0.895 3.105 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.133 3.867 17 C 0.030 3.970 18 C -0.229 4.229 19 C -0.215 4.215 20 C -0.054 4.054 21 O -0.163 6.163 22 C -0.239 4.239 23 S 0.089 5.911 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.044 0.956 28 H 0.083 0.917 29 H -0.006 1.006 30 H 0.039 0.961 31 H 0.261 0.739 32 H 0.107 0.893 33 H 0.057 0.943 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.194 0.806 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.487 2.975 10.879 14.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.240 4.240 3 N -0.165 5.165 4 C -0.038 4.038 5 C -0.009 4.009 6 N -0.249 5.249 7 C 0.066 3.934 8 C -0.547 4.547 9 H 0.083 0.917 10 C -0.144 4.144 11 N -0.537 5.537 12 Si 0.723 3.277 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.210 1.210 16 C 0.005 3.995 17 C -0.021 4.021 18 C -0.249 4.249 19 C -0.234 4.234 20 C -0.122 4.122 21 O -0.058 6.058 22 C -0.378 4.378 23 S 0.342 5.658 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.012 0.988 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.075 0.925 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.211 0.789 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.322 2.238 10.263 14.044 hybrid contribution 1.402 0.761 -0.486 1.668 sum -7.920 2.999 9.777 12.935 Atomic orbital electron populations 1.20366 0.85693 1.03734 1.03481 1.26925 1.01462 0.90898 1.04736 1.66024 1.04731 1.31095 1.14681 1.20037 0.89820 0.93759 1.00206 1.20595 0.94019 0.93838 0.92443 1.61929 1.51079 1.02062 1.09841 1.19853 0.90044 0.90828 0.92644 1.21200 1.30793 1.11212 0.91479 0.91689 1.24951 0.95365 0.94967 0.99094 1.69958 1.33403 1.15931 1.34429 0.86473 0.77663 0.78637 0.84910 1.19559 1.21037 1.21024 1.20490 0.89797 0.85776 1.03455 1.22741 0.92943 0.97057 0.89395 1.21489 1.03151 1.02897 0.97396 1.21671 1.00585 1.03523 0.97623 1.23885 0.99826 0.97290 0.91218 1.84088 1.38621 1.43937 1.39139 1.26823 1.02730 0.95682 1.12574 1.83681 0.98801 1.13624 1.69654 0.89886 0.90551 0.89611 0.93835 0.89915 0.98844 0.94260 0.92977 0.87469 0.92465 0.84200 0.84210 0.78876 0.80741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.46 36.01 0.38 -0.44 16 2 C 0.04 0.61 7.39 -13.46 -0.10 0.51 16 3 N -0.45 -8.60 10.53 -8.05 -0.08 -8.68 16 4 C 0.09 1.79 5.77 -84.22 -0.49 1.31 16 5 C 0.12 2.31 5.26 -4.97 -0.03 2.29 16 6 N -0.52 -11.48 4.39 -238.96 -1.05 -12.53 16 7 C 0.19 4.84 4.56 -4.98 -0.02 4.82 16 8 C -0.51 -14.18 8.29 -34.44 -0.29 -14.47 16 9 H 0.06 1.84 7.25 -52.49 -0.38 1.46 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 12 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 16 C 0.13 2.60 5.35 -4.97 -0.03 2.57 16 17 C 0.03 0.56 6.28 -35.62 -0.22 0.33 16 18 C -0.23 -3.66 9.58 -39.70 -0.38 -4.04 16 19 C -0.21 -3.09 10.91 -39.70 -0.43 -3.52 16 20 C -0.05 -0.80 12.09 29.42 0.36 -0.44 16 21 O -0.16 -3.08 10.65 5.72 0.06 -3.01 16 22 C -0.24 -4.23 9.80 29.12 0.29 -3.94 16 23 S 0.09 1.33 23.18 -107.50 -2.49 -1.16 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.04 0.77 8.01 -51.93 -0.42 0.35 16 28 H 0.08 1.50 6.21 -51.93 -0.32 1.18 16 29 H -0.01 -0.16 8.12 -51.93 -0.42 -0.59 16 30 H 0.04 1.07 6.26 -51.93 -0.32 0.74 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.11 2.28 6.59 -51.93 -0.34 1.94 16 33 H 0.06 1.00 8.05 -51.93 -0.42 0.58 16 34 H 0.14 1.96 8.06 -52.49 -0.42 1.53 16 35 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.19 2.05 8.06 -52.49 -0.42 1.63 16 37 H 0.18 2.94 8.06 -52.49 -0.42 2.52 16 LS Contribution 329.56 15.07 4.97 4.97 Total: -1.00 -32.37 329.56 -8.67 -41.03 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -4.72 Total: 1.62 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -1.06 Total: -13.50 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.40 Total: -46.66 kcal Atomic # 8 Polarization: -3.08 SS G_CDS: 0.06 Total: -3.01 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.49 Total: -1.16 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.37 -8.67 -41.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078666657.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.338 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds