Wall clock time and date at job start Tue Mar 31 2020 06:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29021 * 124.91826 * 2 1 4 4 C 1.31780 * 117.12527 * 180.02562 * 3 2 1 5 5 C 1.50706 * 122.74932 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.46652 * 275.73800 * 5 4 3 7 7 C 1.46897 * 111.00303 * 288.06227 * 6 5 4 8 8 C 1.50699 * 109.47671 * 170.00149 * 7 6 5 9 9 H 1.08000 * 119.99648 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00502 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99511 * 359.97438 * 10 8 7 12 12 Si 1.86790 * 120.00061 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47419 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47450 * 119.99786 * 12 10 8 15 15 H 1.48505 * 109.47266 * 239.99572 * 12 10 8 16 16 C 1.46903 * 110.99924 * 164.11093 * 6 5 4 17 17 C 1.50704 * 109.46985 * 288.26346 * 16 6 5 18 18 C 1.34518 * 125.78900 * 95.97381 * 17 16 6 19 19 C 1.41380 * 106.83713 * 180.02562 * 18 17 16 20 20 C 1.34514 * 106.84568 * 0.02562 * 19 18 17 21 21 O 1.34301 * 108.41720 * 359.97438 * 20 19 18 22 22 C 1.33638 * 114.50039 * 0.23008 * 4 3 2 23 23 S 1.70978 * 124.91466 * 180.02562 * 2 1 3 24 24 H 1.08992 * 109.46936 * 95.03862 * 1 2 3 25 25 H 1.09003 * 109.46876 * 215.04246 * 1 2 3 26 26 H 1.09003 * 109.46952 * 335.03672 * 1 2 3 27 27 H 1.08998 * 109.47304 * 155.74308 * 5 4 3 28 28 H 1.08994 * 109.47245 * 35.73472 * 5 4 3 29 29 H 1.09002 * 109.47298 * 290.00486 * 7 6 5 30 30 H 1.09002 * 109.46896 * 50.00177 * 7 6 5 31 31 H 0.97000 * 119.99572 * 180.02562 * 11 10 8 32 32 H 1.09004 * 109.47217 * 168.26508 * 16 6 5 33 33 H 1.08998 * 109.46944 * 48.26220 * 16 6 5 34 34 H 1.08000 * 126.57802 * 0.06409 * 18 17 16 35 35 H 1.08002 * 126.57833 * 179.97438 * 19 18 17 36 36 H 1.07998 * 125.79037 * 180.25665 * 20 19 18 37 37 H 1.08002 * 126.03357 * 179.76968 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8792 -0.0005 5 6 4.5308 2.0245 -0.0012 6 7 4.7432 2.4863 -1.3794 7 6 5.5337 1.5131 -2.1449 8 6 5.5242 1.8937 -3.6030 9 1 4.9851 2.7711 -3.9284 10 6 6.2036 1.1218 -4.5215 11 7 6.8603 0.0536 -4.1250 12 14 6.1923 1.5941 -6.3287 13 1 5.3873 2.8284 -6.5128 14 1 7.5842 1.8377 -6.7854 15 1 5.5960 0.4915 -7.1248 16 6 5.3774 3.8112 -1.3989 17 6 4.3821 4.8511 -0.9526 18 6 4.2590 5.3378 0.2954 19 6 3.2087 6.2837 0.2643 20 6 2.7524 6.3181 -1.0006 21 8 3.4670 5.4485 -1.7333 22 6 3.9354 -0.4007 -0.0059 23 16 2.4856 -1.4020 -0.0006 24 1 -0.3633 -0.0903 -1.0236 25 1 -0.3633 -0.8414 0.5901 26 1 -0.3633 0.9317 0.4337 27 1 5.4791 1.6917 0.4207 28 1 4.1333 2.8429 0.5990 29 1 6.5598 1.5088 -1.7772 30 1 5.1010 0.5197 -2.0259 31 1 7.3386 -0.4892 -4.7711 32 1 5.7119 4.0391 -2.4110 33 1 6.2333 3.8142 -0.7240 34 1 4.8497 5.0598 1.1557 35 1 2.8424 6.8662 1.0967 36 1 1.9507 6.9427 -1.3661 37 1 4.9545 -0.7581 -0.0107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078666657.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:01 Heat of formation + Delta-G solvation = 46.100834 kcal Electronic energy + Delta-G solvation = -20916.403018 eV Core-core repulsion = 17786.740005 eV Total energy + Delta-G solvation = -3129.663013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.36685 -40.90356 -38.31020 -34.81357 -33.84267 -33.40595 -31.44610 -29.87427 -28.98377 -27.55477 -25.83886 -23.85570 -22.59497 -22.39835 -21.19235 -20.63085 -18.61574 -18.52774 -18.09788 -17.09747 -16.64652 -16.44209 -16.32107 -15.62633 -15.39262 -15.25334 -14.57322 -14.37005 -14.08976 -13.93588 -13.62596 -13.56524 -13.39372 -13.30908 -13.26740 -12.94171 -12.72127 -12.63326 -12.25104 -12.21149 -11.83119 -11.32649 -10.73261 -10.64510 -10.54651 -10.27193 -9.64380 -9.30952 -9.07957 -8.22662 -6.30823 -0.18884 0.48997 0.79002 0.90498 1.36854 1.38306 1.51482 1.76399 1.86878 2.26370 2.38600 3.10204 3.20219 3.43062 3.93053 4.01929 4.14644 4.23169 4.29855 4.36822 4.38513 4.51496 4.54323 4.67097 4.69948 4.85691 4.99508 5.03016 5.05529 5.14847 5.21542 5.29294 5.31363 5.62120 5.73510 6.01216 6.22603 6.36046 6.54508 6.83122 6.90708 7.37862 8.88119 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.008759 B = 0.007381 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.020008 B = 3792.574682 C = 6090.949774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.035 3.965 3 N -0.489 5.489 4 C 0.073 3.927 5 C 0.126 3.874 6 N -0.536 5.536 7 C 0.211 3.789 8 C -0.524 4.524 9 H 0.053 0.947 10 C 0.010 3.990 11 N -0.927 5.927 12 Si 0.960 3.040 13 H -0.270 1.270 14 H -0.274 1.274 15 H -0.278 1.278 16 C 0.137 3.863 17 C -0.007 4.007 18 C -0.216 4.216 19 C -0.218 4.218 20 C -0.053 4.053 21 O -0.196 6.196 22 C -0.266 4.266 23 S 0.144 5.856 24 H 0.092 0.908 25 H 0.108 0.892 26 H 0.090 0.910 27 H 0.051 0.949 28 H 0.091 0.909 29 H -0.027 1.027 30 H 0.018 0.982 31 H 0.265 0.735 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.158 0.842 35 H 0.174 0.826 36 H 0.233 0.767 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.247 3.530 11.437 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.243 4.243 3 N -0.205 5.205 4 C -0.058 4.058 5 C -0.004 4.004 6 N -0.261 5.261 7 C 0.085 3.915 8 C -0.562 4.562 9 H 0.071 0.929 10 C -0.189 4.189 11 N -0.567 5.567 12 Si 0.785 3.215 13 H -0.195 1.195 14 H -0.199 1.199 15 H -0.204 1.204 16 C 0.010 3.990 17 C -0.058 4.058 18 C -0.236 4.236 19 C -0.236 4.236 20 C -0.120 4.120 21 O -0.093 6.093 22 C -0.406 4.406 23 S 0.398 5.602 24 H 0.111 0.889 25 H 0.127 0.873 26 H 0.109 0.891 27 H 0.069 0.931 28 H 0.109 0.891 29 H -0.009 1.009 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.176 0.824 35 H 0.191 0.809 36 H 0.249 0.751 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.086 2.794 10.841 15.755 hybrid contribution 1.854 0.594 -0.588 2.033 sum -9.232 3.388 10.252 14.206 Atomic orbital electron populations 1.20601 0.82504 1.05466 1.04750 1.27767 1.03377 0.90720 1.02427 1.66060 1.04768 1.32774 1.16851 1.20101 0.90329 0.94139 1.01273 1.20581 0.94625 0.94402 0.90817 1.61822 1.50526 1.02262 1.11507 1.19432 0.89090 0.90818 0.92161 1.21428 1.30805 1.10922 0.93061 0.92871 1.25745 0.94888 0.94845 1.03376 1.70057 1.33981 1.16771 1.35938 0.85473 0.78069 0.78294 0.79660 1.19469 1.19916 1.20411 1.20342 0.91021 0.85300 1.02368 1.22486 0.94281 0.98533 0.90477 1.21809 1.03025 1.02037 0.96751 1.22077 0.99794 1.03231 0.98534 1.24783 0.99614 0.96191 0.91389 1.84048 1.39444 1.45175 1.40584 1.26976 1.04145 0.96378 1.13058 1.83384 0.96448 1.11931 1.68455 0.88917 0.87307 0.89121 0.93098 0.89116 1.00901 0.96398 0.92640 0.90221 0.90892 0.82444 0.80883 0.75083 0.80981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.47 10.46 71.24 0.75 -0.72 16 2 C 0.04 1.07 7.39 88.52 0.65 1.73 16 3 N -0.49 -18.57 10.53 -179.40 -1.89 -20.46 16 4 C 0.07 2.87 5.77 41.52 0.24 3.11 16 5 C 0.13 4.92 5.26 85.56 0.45 5.37 16 6 N -0.54 -24.41 4.39 -909.92 -3.99 -28.40 16 7 C 0.21 11.20 4.56 85.56 0.39 11.59 16 8 C -0.52 -30.28 8.29 25.60 0.21 -30.06 16 9 H 0.05 3.13 7.25 -2.91 -0.02 3.11 16 10 C 0.01 0.58 5.46 84.65 0.46 1.04 16 11 N -0.93 -55.16 13.29 21.45 0.28 -54.87 16 12 Si 0.96 45.16 29.54 68.60 2.03 47.18 16 13 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 14 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 16 C 0.14 5.60 5.35 85.56 0.46 6.05 16 17 C -0.01 -0.26 6.28 24.83 0.16 -0.11 16 18 C -0.22 -6.61 9.58 22.19 0.21 -6.39 16 19 C -0.22 -5.68 10.91 22.19 0.24 -5.44 16 20 C -0.05 -1.45 12.09 66.97 0.81 -0.64 16 21 O -0.20 -7.40 10.65 -2.46 -0.03 -7.42 16 22 C -0.27 -9.60 9.80 66.78 0.65 -8.94 16 23 S 0.14 4.13 23.18 -56.49 -1.31 2.82 16 24 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.86 8.01 -2.39 -0.02 1.84 16 28 H 0.09 3.32 6.21 -2.39 -0.01 3.31 16 29 H -0.03 -1.49 8.12 -2.39 -0.02 -1.51 16 30 H 0.02 1.02 6.26 -2.39 -0.01 1.01 16 31 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 32 H 0.08 3.61 6.59 -2.39 -0.02 3.60 16 33 H 0.07 2.65 8.05 -2.39 -0.02 2.63 16 34 H 0.16 4.11 8.06 -2.91 -0.02 4.09 16 35 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 36 H 0.23 4.17 8.06 -2.91 -0.02 4.14 16 37 H 0.17 6.08 8.06 -2.91 -0.02 6.06 16 Total: -1.00 -71.54 329.56 1.85 -69.69 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 1.07 Total: 14.88 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 5.69 Total: -23.42 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -5.60 Total: -103.73 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.03 Total: -7.42 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.31 Total: 2.82 kcal Total: -71.54 1.85 -69.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078666657.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.790 kcal (2) G-P(sol) polarization free energy of solvation -71.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds