Wall clock time and date at job start Tue Mar 31 2020 06:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33387 * 125.19973 * 2 1 4 4 C 1.38422 * 114.91893 * 180.02562 * 3 2 1 5 5 C 1.33392 * 114.92348 * 0.02562 * 4 3 2 6 6 C 1.50700 * 125.20232 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47393 * 89.99987 * 6 5 4 8 8 C 1.52996 * 109.47253 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47160 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99698 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99748 * 179.97438 * 9 8 7 12 12 C 1.37105 * 119.99695 * 180.02562 * 11 9 8 13 13 H 1.07992 * 119.99730 * 18.11682 * 12 11 9 14 14 C 1.38948 * 119.99740 * 198.11834 * 12 11 9 15 15 N 1.31411 * 120.00296 * 18.73104 * 14 12 11 16 16 Si 1.86806 * 119.99882 * 198.72885 * 14 12 11 17 17 H 1.48500 * 109.46886 * 85.58832 * 16 14 12 18 18 H 1.48492 * 109.46976 * 205.59103 * 16 14 12 19 19 H 1.48500 * 109.47054 * 325.59228 * 16 14 12 20 20 C 1.46492 * 120.00361 * 0.02562 * 11 9 8 21 21 C 1.47197 * 109.47425 * 84.20179 * 20 11 9 22 22 N 9.68798 * 172.44699 * 113.69620 * 2 1 3 23 23 S 1.75881 * 109.59086 * 359.97438 * 5 4 3 24 24 H 1.08999 * 109.47291 * 89.99716 * 1 2 3 25 25 H 1.09001 * 109.46816 * 209.99614 * 1 2 3 26 26 H 1.08998 * 109.47205 * 329.99636 * 1 2 3 27 27 H 1.07997 * 122.54071 * 0.02562 * 3 2 1 28 28 H 1.08006 * 122.54126 * 179.73194 * 4 3 2 29 29 H 1.09006 * 109.46191 * 209.99786 * 6 5 4 30 30 H 1.08999 * 109.47181 * 329.99390 * 6 5 4 31 31 H 1.09006 * 109.46565 * 299.99714 * 7 6 5 32 32 H 1.09006 * 109.46802 * 59.99530 * 7 6 5 33 33 H 1.08998 * 109.47133 * 299.99835 * 8 7 6 34 34 H 1.08999 * 109.47001 * 59.99598 * 8 7 6 35 35 H 0.96998 * 120.00115 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.47603 * 204.20378 * 20 11 9 37 37 H 1.09000 * 109.47066 * 324.20183 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 -0.0006 5 6 3.9751 -0.4477 -0.0016 6 6 5.3861 -0.9769 -0.0029 7 6 5.8647 -1.1569 1.4391 8 6 7.2970 -1.6948 1.4378 9 6 7.7687 -1.8714 2.8581 10 8 7.0318 -1.5939 3.7807 11 7 9.0091 -2.3378 3.1031 12 6 9.4380 -2.4990 4.3954 13 1 8.7204 -2.5399 5.2013 14 6 10.7960 -2.6097 4.6679 15 7 11.6790 -2.2025 3.7839 16 14 11.3666 -3.3374 6.2910 17 1 11.4268 -4.8167 6.1763 18 1 12.7150 -2.8113 6.6225 19 1 10.4113 -2.9626 7.3645 20 6 9.8993 -2.6724 1.9888 21 6 10.5835 -1.4547 1.5245 22 7 11.1110 -0.5118 1.1661 23 16 2.5210 -1.4371 -0.0011 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.8668 2.0895 0.0004 28 1 4.3720 1.6351 -0.0049 29 1 5.4132 -1.9376 -0.5173 30 1 6.0385 -0.2710 -0.5169 31 1 5.8375 -0.1962 1.9535 32 1 5.2123 -1.8629 1.9531 33 1 7.3239 -2.6554 0.9235 34 1 7.9496 -0.9891 0.9237 35 1 12.6270 -2.2795 3.9744 36 1 10.6392 -3.4007 2.3209 37 1 9.3150 -3.0950 1.1714 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079801172.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:26 Heat of formation + Delta-G solvation = 15.794493 kcal Electronic energy + Delta-G solvation = -19965.606113 eV Core-core repulsion = 16834.628918 eV Total energy + Delta-G solvation = -3130.977194 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.94639 -38.12248 -35.87294 -34.80654 -34.18034 -32.02369 -31.56011 -28.76704 -27.39923 -25.57997 -24.25943 -22.90825 -21.49870 -19.05226 -18.77355 -17.89119 -16.95222 -16.45516 -16.13792 -15.30552 -14.98363 -14.61605 -14.24539 -14.09846 -13.52830 -13.41333 -13.05824 -12.95955 -12.94498 -12.53704 -12.28495 -12.03268 -11.77556 -11.68609 -11.43514 -11.36831 -11.17994 -11.11890 -10.98559 -10.75339 -10.55530 -10.40341 -10.37533 -10.23855 -9.25686 -8.58928 -8.47250 -8.40801 -8.03463 -6.48657 -4.00165 0.97381 1.58413 1.98393 2.72874 3.11232 3.22368 3.26171 3.56792 3.80812 3.98264 4.12261 4.65962 4.75292 4.88859 4.92533 5.08771 5.14697 5.22392 5.29846 5.39203 5.40080 5.54636 5.61033 5.72995 5.75448 5.86130 5.92317 6.00139 6.14277 6.20370 6.30080 6.45177 6.54099 6.56852 6.65871 7.47634 7.92169 8.29739 8.74560 9.01937 9.21190 9.75916 10.57262 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028675 B = 0.003096 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.230775 B = 9041.395136 C = 9598.554380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.192 4.192 3 C -0.136 4.136 4 C -0.144 4.144 5 C -0.159 4.159 6 C -0.053 4.053 7 C -0.092 4.092 8 C -0.136 4.136 9 C 0.456 3.544 10 O -0.573 6.573 11 N -0.447 5.447 12 C -0.311 4.311 13 H 0.108 0.892 14 C 0.030 3.970 15 N -0.882 5.882 16 Si 0.929 3.071 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.270 1.270 20 C 0.222 3.778 21 C 0.247 3.753 22 N -0.476 5.476 23 S 0.093 5.907 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.273 0.727 36 H 0.129 0.871 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.165 -0.992 -10.351 18.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.309 4.309 3 C -0.166 4.166 4 C -0.173 4.173 5 C -0.277 4.277 6 C -0.092 4.092 7 C -0.131 4.131 8 C -0.177 4.177 9 C 0.245 3.755 10 O -0.456 6.456 11 N -0.168 5.168 12 C -0.438 4.438 13 H 0.125 0.875 14 C -0.173 4.173 15 N -0.522 5.522 16 Si 0.756 3.244 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.194 1.194 20 C 0.094 3.906 21 C -0.071 4.071 22 N -0.157 5.157 23 S 0.356 5.644 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.153 0.847 28 H 0.156 0.844 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.147 0.853 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.836 -1.011 -10.402 18.147 hybrid contribution 0.805 0.960 0.954 1.575 sum -14.031 -0.051 -9.447 16.915 Atomic orbital electron populations 1.20296 0.88106 1.03005 1.02429 1.24426 0.99777 0.95896 1.10778 1.20041 0.93000 0.99038 1.04521 1.20086 0.96170 0.96093 1.04962 1.24518 0.98696 0.96299 1.08147 1.20283 0.89020 1.01266 0.98634 1.21276 0.95053 1.02756 0.94002 1.21629 0.97406 1.02149 0.96502 1.20182 0.83547 0.81377 0.90367 1.90544 1.55218 1.53438 1.46362 1.43663 1.10690 1.56712 1.05690 1.19737 0.91885 1.48265 0.83954 0.87473 1.25278 0.95612 0.96831 0.99565 1.69817 1.02438 1.43478 1.36459 0.85882 0.77881 0.79111 0.81549 1.20114 1.21128 1.19434 1.18749 0.93312 0.89531 0.88959 1.29448 0.92425 0.94749 0.90455 1.80993 1.10538 1.11313 1.12812 1.84215 0.96821 1.09603 1.73722 0.91027 0.91435 0.90742 0.84704 0.84399 0.90753 0.89951 0.91080 0.91130 0.89968 0.90295 0.91648 0.85333 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.38 36.01 0.37 -0.24 16 2 C -0.19 -2.07 6.51 -36.00 -0.23 -2.30 16 3 C -0.14 -1.51 10.05 -41.21 -0.41 -1.92 16 4 C -0.14 -1.74 10.05 -41.21 -0.41 -2.16 16 5 C -0.16 -2.00 5.76 -36.00 -0.21 -2.21 16 6 C -0.05 -0.64 5.71 -27.88 -0.16 -0.80 16 7 C -0.09 -1.42 4.49 -26.73 -0.12 -1.54 16 8 C -0.14 -2.24 4.30 -27.88 -0.12 -2.36 16 9 C 0.46 10.20 7.56 -10.99 -0.08 10.11 16 10 O -0.57 -14.94 15.64 5.55 0.09 -14.85 16 11 N -0.45 -10.34 2.60 -117.94 -0.31 -10.65 16 12 C -0.31 -8.02 9.33 -14.93 -0.14 -8.16 16 13 H 0.11 2.93 7.37 -52.49 -0.39 2.54 16 14 C 0.03 0.74 4.94 -17.47 -0.09 0.66 16 15 N -0.88 -22.21 9.33 55.50 0.52 -21.69 16 16 Si 0.93 19.73 29.59 -169.99 -5.03 14.70 16 17 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 20 C 0.22 4.33 4.91 -6.83 -0.03 4.30 16 21 C 0.25 5.40 12.96 -20.69 -0.27 5.13 16 22 N -0.48 -11.23 18.55 42.24 0.78 -10.45 16 23 S 0.09 1.08 23.31 -107.50 -2.51 -1.43 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 33 H 0.08 1.10 7.41 -51.93 -0.39 0.72 16 34 H 0.08 1.27 7.51 -51.93 -0.39 0.88 16 35 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 36 H 0.13 2.59 6.40 -51.93 -0.33 2.25 16 37 H 0.08 1.20 6.68 -51.93 -0.35 0.86 16 LS Contribution 334.02 15.07 5.03 5.03 Total: -1.00 -31.05 334.02 -8.10 -39.15 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.78 Total: 1.67 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.91 Total: -1.50 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.99 Total: -42.78 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.09 Total: -14.85 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.70 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.51 Total: -1.43 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.05 -8.10 -39.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079801172.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.948 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds