Wall clock time and date at job start Tue Mar 31 2020 06:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33387 * 125.19973 * 2 1 4 4 C 1.38422 * 114.91893 * 180.02562 * 3 2 1 5 5 C 1.33392 * 114.92348 * 0.02562 * 4 3 2 6 6 C 1.50700 * 125.20232 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47393 * 89.99987 * 6 5 4 8 8 C 1.52996 * 109.47253 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47160 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99698 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99748 * 179.97438 * 9 8 7 12 12 C 1.37105 * 119.99695 * 180.02562 * 11 9 8 13 13 H 1.07992 * 119.99730 * 18.11682 * 12 11 9 14 14 C 1.38948 * 119.99740 * 198.11834 * 12 11 9 15 15 N 1.31411 * 120.00296 * 18.73104 * 14 12 11 16 16 Si 1.86806 * 119.99882 * 198.72885 * 14 12 11 17 17 H 1.48500 * 109.46886 * 85.58832 * 16 14 12 18 18 H 1.48492 * 109.46976 * 205.59103 * 16 14 12 19 19 H 1.48500 * 109.47054 * 325.59228 * 16 14 12 20 20 C 1.46492 * 120.00361 * 0.02562 * 11 9 8 21 21 C 1.47197 * 109.47425 * 84.20179 * 20 11 9 22 22 N 9.68798 * 172.44699 * 113.69620 * 2 1 3 23 23 S 1.75881 * 109.59086 * 359.97438 * 5 4 3 24 24 H 1.08999 * 109.47291 * 89.99716 * 1 2 3 25 25 H 1.09001 * 109.46816 * 209.99614 * 1 2 3 26 26 H 1.08998 * 109.47205 * 329.99636 * 1 2 3 27 27 H 1.07997 * 122.54071 * 0.02562 * 3 2 1 28 28 H 1.08006 * 122.54126 * 179.73194 * 4 3 2 29 29 H 1.09006 * 109.46191 * 209.99786 * 6 5 4 30 30 H 1.08999 * 109.47181 * 329.99390 * 6 5 4 31 31 H 1.09006 * 109.46565 * 299.99714 * 7 6 5 32 32 H 1.09006 * 109.46802 * 59.99530 * 7 6 5 33 33 H 1.08998 * 109.47133 * 299.99835 * 8 7 6 34 34 H 1.08999 * 109.47001 * 59.99598 * 8 7 6 35 35 H 0.96998 * 120.00115 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.47603 * 204.20378 * 20 11 9 37 37 H 1.09000 * 109.47066 * 324.20183 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 -0.0006 5 6 3.9751 -0.4477 -0.0016 6 6 5.3861 -0.9769 -0.0029 7 6 5.8647 -1.1569 1.4391 8 6 7.2970 -1.6948 1.4378 9 6 7.7687 -1.8714 2.8581 10 8 7.0318 -1.5939 3.7807 11 7 9.0091 -2.3378 3.1031 12 6 9.4380 -2.4990 4.3954 13 1 8.7204 -2.5399 5.2013 14 6 10.7960 -2.6097 4.6679 15 7 11.6790 -2.2025 3.7839 16 14 11.3666 -3.3374 6.2910 17 1 11.4268 -4.8167 6.1763 18 1 12.7150 -2.8113 6.6225 19 1 10.4113 -2.9626 7.3645 20 6 9.8993 -2.6724 1.9888 21 6 10.5835 -1.4547 1.5245 22 7 11.1110 -0.5118 1.1661 23 16 2.5210 -1.4371 -0.0011 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.8668 2.0895 0.0004 28 1 4.3720 1.6351 -0.0049 29 1 5.4132 -1.9376 -0.5173 30 1 6.0385 -0.2710 -0.5169 31 1 5.8375 -0.1962 1.9535 32 1 5.2123 -1.8629 1.9531 33 1 7.3239 -2.6554 0.9235 34 1 7.9496 -0.9891 0.9237 35 1 12.6270 -2.2795 3.9744 36 1 10.6392 -3.4007 2.3209 37 1 9.3150 -3.0950 1.1714 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079801172.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:25 Heat of formation + Delta-G solvation = -0.593561 kcal Electronic energy + Delta-G solvation = -19966.316752 eV Core-core repulsion = 16834.628918 eV Total energy + Delta-G solvation = -3131.687834 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65270 -39.02052 -37.61437 -36.26580 -35.69941 -33.75816 -32.64304 -29.90206 -29.04282 -27.00134 -25.56104 -23.87705 -22.66166 -20.64444 -19.74555 -19.66640 -18.20002 -17.99100 -17.62386 -16.52712 -16.34727 -16.09178 -15.85880 -14.94744 -14.88547 -14.70693 -14.59213 -14.15413 -13.87810 -13.84747 -13.52967 -13.40566 -13.31689 -13.04345 -12.90856 -12.76565 -12.42691 -12.32480 -12.28692 -12.23262 -12.11380 -11.97315 -11.67016 -11.47261 -11.10214 -10.39682 -9.90543 -9.35700 -9.29248 -8.38586 -5.96401 0.09678 0.72758 1.11074 1.40621 1.47640 1.57163 1.83356 1.86138 2.08652 2.27358 2.36457 3.02028 3.15018 3.63274 3.80917 3.95650 4.02934 4.10113 4.32444 4.44090 4.44924 4.58847 4.67613 4.73200 4.75911 4.83005 4.84741 4.91431 4.97059 5.13028 5.17964 5.34573 5.41487 5.44380 5.48810 5.68257 6.06201 6.42536 7.03147 7.14510 7.38428 7.95939 8.64458 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028675 B = 0.003096 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.230775 B = 9041.395136 C = 9598.554380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.190 4.190 3 C -0.152 4.152 4 C -0.151 4.151 5 C -0.182 4.182 6 C -0.043 4.043 7 C -0.084 4.084 8 C -0.125 4.125 9 C 0.447 3.553 10 O -0.621 6.621 11 N -0.459 5.459 12 C -0.340 4.340 13 H 0.079 0.921 14 C 0.004 3.996 15 N -0.895 5.895 16 Si 0.986 3.014 17 H -0.259 1.259 18 H -0.286 1.286 19 H -0.281 1.281 20 C 0.222 3.778 21 C 0.259 3.741 22 N -0.511 5.511 23 S 0.082 5.918 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.154 0.846 28 H 0.143 0.857 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.274 0.726 36 H 0.124 0.876 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.738 -1.745 -11.769 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.307 4.307 3 C -0.181 4.181 4 C -0.181 4.181 5 C -0.299 4.299 6 C -0.082 4.082 7 C -0.123 4.123 8 C -0.165 4.165 9 C 0.238 3.762 10 O -0.507 6.507 11 N -0.179 5.179 12 C -0.467 4.467 13 H 0.097 0.903 14 C -0.197 4.197 15 N -0.535 5.535 16 Si 0.811 3.189 17 H -0.183 1.183 18 H -0.211 1.211 19 H -0.206 1.206 20 C 0.096 3.904 21 C -0.058 4.058 22 N -0.192 5.192 23 S 0.345 5.655 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.172 0.828 28 H 0.161 0.839 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.142 0.858 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.142 0.858 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.395 -1.776 -11.852 19.510 hybrid contribution 0.922 1.239 1.427 2.103 sum -14.473 -0.537 -10.425 17.845 Atomic orbital electron populations 1.20423 0.85984 1.03895 1.03655 1.24868 1.01229 0.95174 1.09412 1.20293 0.92705 1.00171 1.04962 1.20351 0.97024 0.96273 1.04465 1.24628 0.99111 0.96693 1.09456 1.20189 0.89025 1.02698 0.96287 1.21154 0.94382 1.00745 0.95985 1.21633 0.97649 1.04636 0.92572 1.21243 0.82828 0.79771 0.92400 1.90512 1.56464 1.55137 1.48560 1.43855 1.11458 1.56849 1.05772 1.19616 0.91968 1.50143 0.85012 0.90287 1.25866 0.95155 0.96447 1.02268 1.69901 1.02485 1.43476 1.37591 0.85035 0.76743 0.79251 0.77853 1.18320 1.21125 1.20582 1.19101 0.93449 0.88366 0.89510 1.29908 0.91672 0.94723 0.89501 1.80999 1.11713 1.12352 1.14157 1.84187 0.97020 1.10364 1.73897 0.89540 0.90954 0.89424 0.82844 0.83904 0.88764 0.88831 0.93847 0.92620 0.85774 0.89353 0.91612 0.85795 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.38 71.24 0.74 -0.34 16 2 C -0.19 -3.80 6.51 24.59 0.16 -3.64 16 3 C -0.15 -3.17 10.05 21.22 0.21 -2.95 16 4 C -0.15 -3.54 10.05 21.22 0.21 -3.33 16 5 C -0.18 -4.38 5.76 24.59 0.14 -4.24 16 6 C -0.04 -0.97 5.71 29.85 0.17 -0.80 16 7 C -0.08 -2.53 4.49 30.59 0.14 -2.39 16 8 C -0.13 -3.86 4.30 29.85 0.13 -3.73 16 9 C 0.45 19.88 7.56 87.66 0.66 20.54 16 10 O -0.62 -33.33 15.64 -3.05 -0.05 -33.38 16 11 N -0.46 -21.05 2.60 -645.45 -1.68 -22.73 16 12 C -0.34 -17.74 9.33 84.04 0.78 -16.95 16 13 H 0.08 4.49 7.37 -2.91 -0.02 4.47 16 14 C 0.00 0.21 4.94 84.93 0.42 0.63 16 15 N -0.90 -44.50 9.33 21.66 0.20 -44.30 16 16 Si 0.99 40.35 29.59 68.60 2.03 42.38 16 17 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 18 H -0.29 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 20 C 0.22 8.21 4.91 84.57 0.42 8.62 16 21 C 0.26 10.95 12.96 89.41 1.16 12.10 16 22 N -0.51 -23.63 18.55 20.03 0.37 -23.26 16 23 S 0.08 1.81 23.31 -56.49 -1.32 0.49 16 24 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 28 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 29 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.52 8.10 -2.38 -0.02 1.50 16 32 H 0.05 1.82 8.10 -2.38 -0.02 1.80 16 33 H 0.12 2.81 7.41 -2.39 -0.02 2.79 16 34 H 0.09 2.63 7.51 -2.39 -0.02 2.61 16 35 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 36 H 0.12 4.77 6.40 -2.39 -0.02 4.76 16 37 H 0.14 3.51 6.68 -2.39 -0.02 3.50 16 Total: -1.00 -68.80 334.02 5.98 -62.82 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.08 Total: 14.44 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 5.34 Total: 3.53 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -1.10 Total: -90.29 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.05 Total: -33.38 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.32 Total: 0.49 kcal Total: -68.80 5.98 -62.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079801172.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.226 kcal (2) G-P(sol) polarization free energy of solvation -68.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds