Wall clock time and date at job start Tue Mar 31 2020 06:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.46727 * 2 1 4 4 C 1.46894 * 111.00096 * 287.94821 * 3 2 1 5 5 C 1.50702 * 109.47461 * 160.36527 * 4 3 2 6 6 H 1.08004 * 119.99604 * 4.66154 * 5 4 3 7 7 C 1.37874 * 120.00216 * 184.66796 * 5 4 3 8 8 N 1.31509 * 120.00183 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99791 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47332 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46744 * 119.99983 * 9 7 5 12 12 H 1.48493 * 109.47125 * 240.00005 * 9 7 5 13 13 C 1.46898 * 110.99728 * 163.99405 * 3 2 1 14 14 C 1.50697 * 109.47502 * 293.95712 * 13 3 2 15 15 N 1.30340 * 125.46316 * 89.95432 * 14 13 3 16 16 C 1.34138 * 108.93995 * 179.76990 * 15 14 13 17 17 C 1.36059 * 107.49130 * 0.43440 * 16 15 14 18 18 C 1.47217 * 126.60705 * 179.84083 * 17 16 15 19 19 C 1.35065 * 125.27968 * 359.40612 * 18 17 16 20 20 C 1.37932 * 114.64667 * 179.79367 * 19 18 17 21 21 C 1.33616 * 115.09147 * 0.49877 * 20 19 18 22 22 S 1.75848 * 109.80107 * 359.73199 * 21 20 19 23 23 O 1.34109 * 125.45669 * 270.00126 * 14 13 3 24 24 H 1.08995 * 109.47235 * 59.31881 * 1 2 3 25 25 H 1.09006 * 109.47053 * 179.31450 * 1 2 3 26 26 H 1.08995 * 109.47258 * 299.31010 * 1 2 3 27 27 H 1.08997 * 109.47090 * 240.00175 * 2 1 3 28 28 H 1.08995 * 109.47322 * 120.00011 * 2 1 3 29 29 H 1.09008 * 109.47079 * 280.36510 * 4 3 2 30 30 H 1.09001 * 109.47446 * 40.35970 * 4 3 2 31 31 H 0.96997 * 120.00060 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47540 * 173.95223 * 13 3 2 33 33 H 1.09005 * 109.47304 * 53.95724 * 13 3 2 34 34 H 1.08003 * 126.24845 * 180.26741 * 16 15 14 35 35 H 1.07998 * 122.67757 * 359.97438 * 19 18 17 36 36 H 1.08000 * 122.45117 * 180.21061 * 20 19 18 37 37 H 1.08002 * 125.10431 * 179.75309 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7966 2.0222 -1.3046 5 6 1.8478 3.5202 -1.1475 6 1 2.1023 3.9544 -0.1919 7 6 1.5697 4.3361 -2.2235 8 7 1.2592 3.8073 -3.3868 9 14 1.6325 6.1929 -2.0284 10 1 2.0018 6.5316 -0.6305 11 1 2.6450 6.7543 -2.9583 12 1 0.3000 6.7688 -2.3411 13 6 3.4379 1.4420 0.3782 14 6 3.5933 1.0068 1.8125 15 7 3.7957 -0.2167 2.2138 16 6 3.8887 -0.2262 3.5520 17 6 3.7251 1.0541 3.9824 18 6 3.7469 1.5205 5.3785 19 6 3.9245 0.7329 6.4614 20 6 3.9107 1.4018 7.6676 21 6 3.7141 2.7207 7.5819 22 16 3.5383 3.1885 5.8959 23 8 3.5446 1.8161 2.8807 24 1 -0.3633 0.5243 -0.8838 25 1 -0.3633 -1.0276 -0.0123 26 1 -0.3633 0.5030 0.8961 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.5715 1.7034 -2.0019 30 1 0.8194 1.7304 -1.6893 31 1 1.0639 4.3814 -4.1439 32 1 3.8031 2.4629 0.2667 33 1 4.0130 0.7780 -0.2673 34 1 4.0592 -1.0924 4.1741 35 1 4.0688 -0.3349 6.3884 36 1 4.0443 0.8959 8.6123 37 1 3.6701 3.3979 8.4221 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040631.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:30 Heat of formation + Delta-G solvation = 63.380197 kcal Electronic energy + Delta-G solvation = -20357.036008 eV Core-core repulsion = 17228.122284 eV Total energy + Delta-G solvation = -3128.913724 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.09145 -37.98960 -37.09183 -34.57553 -32.71772 -32.10849 -30.48711 -28.75512 -26.84808 -25.21834 -24.25493 -22.68541 -22.27854 -21.25678 -19.85321 -19.26602 -18.26140 -16.73782 -16.43747 -16.22442 -15.71234 -14.82964 -14.66953 -14.27856 -14.05175 -13.68477 -13.36977 -13.24611 -13.13576 -12.90245 -12.33596 -12.23178 -11.87568 -11.47691 -11.23447 -11.12118 -11.04777 -10.97806 -10.86016 -10.60853 -10.43977 -10.27696 -9.91946 -9.74656 -9.26904 -8.73746 -8.46207 -7.99685 -7.42777 -6.05788 -4.07527 0.31507 1.31256 1.75616 1.76112 2.52822 2.68768 2.92408 3.30111 3.38000 3.43292 4.19098 4.41172 4.68044 4.82036 4.90570 5.03889 5.10642 5.26997 5.30600 5.59449 5.67118 5.73394 5.82617 5.92179 6.01331 6.06484 6.08524 6.14371 6.20869 6.36026 6.44637 6.58999 6.80819 7.10318 7.24076 7.75608 7.87586 7.99471 8.07877 8.44304 9.00039 9.57182 11.04641 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016476 B = 0.004119 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.080085 B = 6795.934891 C = 8011.426425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.043 3.957 3 N -0.532 5.532 4 C 0.192 3.808 5 C -0.509 4.509 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.147 3.853 14 C 0.242 3.758 15 N -0.489 5.489 16 C -0.002 4.002 17 C -0.004 4.004 18 C -0.104 4.104 19 C -0.122 4.122 20 C -0.132 4.132 21 C -0.221 4.221 22 S 0.152 5.848 23 O -0.185 6.185 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.028 0.972 28 H 0.069 0.931 29 H -0.005 1.005 30 H 0.044 0.956 31 H 0.261 0.739 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.184 0.816 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.472 -6.169 19.099 20.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 N -0.258 5.258 4 C 0.068 3.932 5 C -0.548 4.548 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.018 3.982 14 C 0.036 3.964 15 N -0.218 5.218 16 C -0.145 4.145 17 C -0.059 4.059 18 C -0.222 4.222 19 C -0.153 4.153 20 C -0.162 4.162 21 C -0.357 4.357 22 S 0.418 5.582 23 O -0.071 6.071 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.012 0.988 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.130 0.870 33 H 0.090 0.910 34 H 0.201 0.799 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.933 -4.876 18.114 19.397 hybrid contribution 0.569 -0.213 0.698 0.925 sum 5.502 -5.089 18.812 20.250 Atomic orbital electron populations 1.21724 0.95346 1.00071 1.02778 1.22145 0.96092 0.90077 1.00197 1.62153 1.12872 1.15530 1.35289 1.19852 0.97119 0.94257 0.81952 1.21210 1.46619 0.90502 0.96472 0.91753 1.24965 0.95295 0.99004 0.95160 1.69955 1.47461 1.35247 1.01034 0.86465 0.77630 0.85290 0.78221 1.19600 1.21070 1.21002 1.20531 0.92997 1.03346 0.81299 1.26814 0.95601 0.82967 0.91067 1.70432 1.19481 1.20894 1.10987 1.23283 1.04168 0.95996 0.91081 1.20152 1.10318 0.90442 0.85016 1.21561 1.11454 0.97816 0.91350 1.20192 1.03892 1.01114 0.90109 1.19983 1.03870 0.93491 0.98835 1.25860 1.09929 0.99821 1.00135 1.84723 1.69013 1.05634 0.98804 1.84562 1.68443 1.39512 1.14599 0.91915 0.93474 0.92667 0.95409 0.91294 0.98750 0.93755 0.92906 0.86969 0.91016 0.79900 0.83681 0.83764 0.81517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.99 37.16 0.37 -2.15 16 2 C 0.04 0.82 5.55 -3.82 -0.02 0.80 16 3 N -0.53 -11.45 4.37 -237.52 -1.04 -12.48 16 4 C 0.19 4.83 4.59 -4.98 -0.02 4.81 16 5 C -0.51 -13.94 8.61 -34.44 -0.30 -14.24 16 6 H 0.06 1.76 7.66 -52.48 -0.40 1.36 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.06 13.29 55.43 0.74 -25.33 16 9 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.15 2.83 5.41 -4.98 -0.03 2.81 16 14 C 0.24 4.41 7.02 -12.91 -0.09 4.32 16 15 N -0.49 -8.36 10.12 -10.73 -0.11 -8.47 16 16 C 0.00 -0.03 11.53 -17.33 -0.20 -0.23 16 17 C 0.00 -0.06 7.28 -36.72 -0.27 -0.33 16 18 C -0.10 -1.34 6.43 -37.06 -0.24 -1.58 16 19 C -0.12 -1.22 9.85 -40.82 -0.40 -1.63 16 20 C -0.13 -1.12 10.16 -41.31 -0.42 -1.54 16 21 C -0.22 -1.96 11.22 29.11 0.33 -1.64 16 22 S 0.15 1.80 23.31 -107.50 -2.51 -0.71 16 23 O -0.18 -3.37 10.80 3.81 0.04 -3.33 16 24 H 0.06 1.21 6.52 -51.93 -0.34 0.87 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 28 H 0.07 1.27 6.05 -51.93 -0.31 0.96 16 29 H -0.01 -0.14 8.00 -51.92 -0.42 -0.55 16 30 H 0.04 1.19 6.24 -51.93 -0.32 0.87 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.11 2.22 7.32 -51.93 -0.38 1.84 16 33 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 34 H 0.18 1.92 7.84 -52.48 -0.41 1.51 16 35 H 0.15 1.12 7.79 -52.49 -0.41 0.72 16 36 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 330.14 15.07 4.98 4.98 Total: -1.00 -30.50 330.14 -8.97 -39.47 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -4.66 Total: -1.37 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -1.38 Total: -9.11 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.41 Total: -46.28 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: 0.04 Total: -3.33 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.51 Total: -0.71 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.50 -8.97 -39.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040631.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.850 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds