Wall clock time and date at job start Tue Mar 31 2020 06:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.46727 * 2 1 4 4 C 1.46894 * 111.00096 * 287.94821 * 3 2 1 5 5 C 1.50702 * 109.47461 * 160.36527 * 4 3 2 6 6 H 1.08004 * 119.99604 * 4.66154 * 5 4 3 7 7 C 1.37874 * 120.00216 * 184.66796 * 5 4 3 8 8 N 1.31509 * 120.00183 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99791 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47332 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46744 * 119.99983 * 9 7 5 12 12 H 1.48493 * 109.47125 * 240.00005 * 9 7 5 13 13 C 1.46898 * 110.99728 * 163.99405 * 3 2 1 14 14 C 1.50697 * 109.47502 * 293.95712 * 13 3 2 15 15 N 1.30340 * 125.46316 * 89.95432 * 14 13 3 16 16 C 1.34138 * 108.93995 * 179.76990 * 15 14 13 17 17 C 1.36059 * 107.49130 * 0.43440 * 16 15 14 18 18 C 1.47217 * 126.60705 * 179.84083 * 17 16 15 19 19 C 1.35065 * 125.27968 * 359.40612 * 18 17 16 20 20 C 1.37932 * 114.64667 * 179.79367 * 19 18 17 21 21 C 1.33616 * 115.09147 * 0.49877 * 20 19 18 22 22 S 1.75848 * 109.80107 * 359.73199 * 21 20 19 23 23 O 1.34109 * 125.45669 * 270.00126 * 14 13 3 24 24 H 1.08995 * 109.47235 * 59.31881 * 1 2 3 25 25 H 1.09006 * 109.47053 * 179.31450 * 1 2 3 26 26 H 1.08995 * 109.47258 * 299.31010 * 1 2 3 27 27 H 1.08997 * 109.47090 * 240.00175 * 2 1 3 28 28 H 1.08995 * 109.47322 * 120.00011 * 2 1 3 29 29 H 1.09008 * 109.47079 * 280.36510 * 4 3 2 30 30 H 1.09001 * 109.47446 * 40.35970 * 4 3 2 31 31 H 0.96997 * 120.00060 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47540 * 173.95223 * 13 3 2 33 33 H 1.09005 * 109.47304 * 53.95724 * 13 3 2 34 34 H 1.08003 * 126.24845 * 180.26741 * 16 15 14 35 35 H 1.07998 * 122.67757 * 359.97438 * 19 18 17 36 36 H 1.08000 * 122.45117 * 180.21061 * 20 19 18 37 37 H 1.08002 * 125.10431 * 179.75309 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7966 2.0222 -1.3046 5 6 1.8478 3.5202 -1.1475 6 1 2.1023 3.9544 -0.1919 7 6 1.5697 4.3361 -2.2235 8 7 1.2592 3.8073 -3.3868 9 14 1.6325 6.1929 -2.0284 10 1 2.0018 6.5316 -0.6305 11 1 2.6450 6.7543 -2.9583 12 1 0.3000 6.7688 -2.3411 13 6 3.4379 1.4420 0.3782 14 6 3.5933 1.0068 1.8125 15 7 3.7957 -0.2167 2.2138 16 6 3.8887 -0.2262 3.5520 17 6 3.7251 1.0541 3.9824 18 6 3.7469 1.5205 5.3785 19 6 3.9245 0.7329 6.4614 20 6 3.9107 1.4018 7.6676 21 6 3.7141 2.7207 7.5819 22 16 3.5383 3.1885 5.8959 23 8 3.5446 1.8161 2.8807 24 1 -0.3633 0.5243 -0.8838 25 1 -0.3633 -1.0276 -0.0123 26 1 -0.3633 0.5030 0.8961 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.5715 1.7034 -2.0019 30 1 0.8194 1.7304 -1.6893 31 1 1.0639 4.3814 -4.1439 32 1 3.8031 2.4629 0.2667 33 1 4.0130 0.7780 -0.2673 34 1 4.0592 -1.0924 4.1741 35 1 4.0688 -0.3349 6.3884 36 1 4.0443 0.8959 8.6123 37 1 3.6701 3.3979 8.4221 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040631.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:30 Heat of formation + Delta-G solvation = 43.117066 kcal Electronic energy + Delta-G solvation = -20357.914683 eV Core-core repulsion = 17228.122284 eV Total energy + Delta-G solvation = -3129.792399 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.35120 -38.89830 -38.64569 -35.86687 -34.78404 -33.27446 -31.89997 -30.29842 -28.35409 -26.65014 -25.27827 -24.51434 -23.40882 -22.61918 -21.48374 -20.09365 -19.23393 -18.64082 -17.88068 -17.56878 -16.72496 -16.55518 -16.16617 -15.72033 -15.50263 -15.13361 -14.77570 -14.25478 -14.12953 -14.07511 -13.65265 -13.45593 -13.34181 -13.14932 -12.93628 -12.71791 -12.65426 -12.47601 -12.33490 -12.13320 -11.86295 -11.68324 -11.55085 -11.30542 -10.84960 -10.59859 -9.59641 -9.21463 -8.98230 -8.19780 -6.29122 -0.60642 0.46558 0.67851 0.98321 1.40486 1.41961 1.46383 1.54637 1.55378 1.93577 2.40711 2.89196 3.13055 3.32433 3.61242 3.93553 4.17134 4.17914 4.20123 4.33187 4.37419 4.50105 4.58182 4.66067 4.68548 4.86059 4.87349 4.97551 5.08290 5.15471 5.23119 5.23850 5.26721 5.31388 5.46723 5.65820 6.04016 6.20959 6.48374 6.63369 6.84629 7.40032 8.90783 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016476 B = 0.004119 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.080085 B = 6795.934891 C = 8011.426425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.046 3.954 3 N -0.542 5.542 4 C 0.209 3.791 5 C -0.523 4.523 6 H 0.058 0.942 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.963 3.037 10 H -0.268 1.268 11 H -0.276 1.276 12 H -0.279 1.279 13 C 0.154 3.846 14 C 0.213 3.787 15 N -0.489 5.489 16 C -0.010 4.010 17 C 0.001 3.999 18 C -0.148 4.148 19 C -0.093 4.093 20 C -0.136 4.136 21 C -0.195 4.195 22 S 0.088 5.912 23 O -0.208 6.208 24 H 0.040 0.960 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.028 0.972 28 H 0.078 0.922 29 H -0.025 1.025 30 H 0.023 0.977 31 H 0.265 0.735 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.224 0.776 35 H 0.173 0.827 36 H 0.183 0.817 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.922 -6.928 22.336 24.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.082 4.082 3 N -0.269 5.269 4 C 0.084 3.916 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.190 4.190 8 N -0.570 5.570 9 Si 0.788 3.212 10 H -0.192 1.192 11 H -0.202 1.202 12 H -0.204 1.204 13 C 0.025 3.975 14 C 0.008 3.992 15 N -0.219 5.219 16 C -0.152 4.152 17 C -0.053 4.053 18 C -0.265 4.265 19 C -0.125 4.125 20 C -0.165 4.165 21 C -0.331 4.331 22 S 0.354 5.646 23 O -0.095 6.095 24 H 0.059 0.941 25 H 0.098 0.902 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.097 0.903 29 H -0.008 1.008 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.241 0.759 35 H 0.191 0.809 36 H 0.200 0.800 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 5.388 -5.645 21.362 22.743 hybrid contribution 0.467 -0.038 -0.053 0.472 sum 5.856 -5.682 21.309 22.818 Atomic orbital electron populations 1.21683 0.94447 1.01771 1.01382 1.22189 0.96807 0.88665 1.00569 1.62045 1.14754 1.17122 1.32952 1.19473 0.95196 0.93648 0.83323 1.21462 1.46564 0.91850 0.96285 0.92421 1.25784 0.94797 1.03678 0.94767 1.70061 1.48220 1.36987 1.01780 0.85431 0.77860 0.79614 0.78316 1.19245 1.20174 1.20429 1.20311 0.91619 1.02774 0.82819 1.26297 0.98802 0.83547 0.90603 1.70374 1.18766 1.20132 1.12635 1.23859 1.04179 0.96951 0.90214 1.20763 1.08569 0.90669 0.85347 1.21638 1.15753 0.98316 0.90827 1.20697 0.99866 1.02325 0.89586 1.20420 1.03039 0.93294 0.99706 1.26264 1.07686 1.00605 0.98496 1.84949 1.70479 1.06815 1.02346 1.84526 1.68843 1.40567 1.15545 0.94069 0.90207 0.93174 0.95348 0.90327 1.00761 0.95852 0.92610 0.88512 0.90245 0.75924 0.80928 0.79952 0.78524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 9.99 71.98 0.72 -4.12 16 2 C 0.05 1.75 5.55 86.30 0.48 2.23 16 3 N -0.54 -24.25 4.37 -905.37 -3.96 -28.21 16 4 C 0.21 11.00 4.59 85.56 0.39 11.39 16 5 C -0.52 -29.64 8.61 25.60 0.22 -29.42 16 6 H 0.06 3.28 7.66 -2.91 -0.02 3.25 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -55.25 13.29 21.45 0.28 -54.96 16 9 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 C 0.15 6.18 5.41 85.56 0.46 6.65 16 14 C 0.21 7.96 7.02 88.33 0.62 8.58 16 15 N -0.49 -16.48 10.12 -302.54 -3.06 -19.54 16 16 C -0.01 -0.27 11.53 83.83 0.97 0.70 16 17 C 0.00 0.03 7.28 24.12 0.18 0.20 16 18 C -0.15 -3.61 6.43 23.90 0.15 -3.45 16 19 C -0.09 -1.52 9.85 21.47 0.21 -1.31 16 20 C -0.14 -1.69 10.16 21.15 0.21 -1.48 16 21 C -0.19 -2.80 11.22 66.77 0.75 -2.05 16 22 S 0.09 2.04 23.31 -56.49 -1.32 0.72 16 23 O -0.21 -7.82 10.80 -9.30 -0.10 -7.93 16 24 H 0.04 1.63 6.52 -2.39 -0.02 1.62 16 25 H 0.08 2.29 8.14 -2.38 -0.02 2.28 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.03 1.08 8.05 -2.39 -0.02 1.06 16 28 H 0.08 2.89 6.05 -2.39 -0.01 2.87 16 29 H -0.03 -1.41 8.00 -2.38 -0.02 -1.42 16 30 H 0.02 1.32 6.24 -2.39 -0.01 1.31 16 31 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 32 H 0.10 4.10 7.32 -2.39 -0.02 4.08 16 33 H 0.08 3.00 8.12 -2.38 -0.02 2.98 16 34 H 0.22 3.89 7.84 -2.91 -0.02 3.87 16 35 H 0.17 1.81 7.79 -2.91 -0.02 1.78 16 36 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 37 H 0.20 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -68.23 330.14 0.78 -67.46 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 1.08 Total: 7.05 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 5.83 Total: -11.14 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -6.73 Total: -102.72 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.10 Total: -7.93 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.32 Total: 0.72 kcal Total: -68.23 0.78 -67.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040631.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.572 kcal (2) G-P(sol) polarization free energy of solvation -68.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds