Wall clock time and date at job start Tue Mar 31 2020 06:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46895 * 109.46877 * 2 1 4 4 C 1.46903 * 111.00241 * 297.98775 * 3 2 1 5 5 C 1.50695 * 109.47091 * 292.92437 * 4 3 2 6 6 H 1.08001 * 120.00323 * 354.96352 * 5 4 3 7 7 C 1.37887 * 120.00260 * 174.95951 * 5 4 3 8 8 N 1.31519 * 119.99462 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00382 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46969 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47199 * 120.00058 * 9 7 5 12 12 H 1.48497 * 109.46997 * 240.00197 * 9 7 5 13 13 C 1.46896 * 111.00182 * 61.94606 * 3 2 1 14 14 C 1.50695 * 109.47413 * 66.04637 * 13 3 2 15 15 C 1.34473 * 126.05652 * 94.97775 * 14 13 3 16 16 O 1.34909 * 107.33198 * 179.79751 * 15 14 13 17 17 C 1.34534 * 107.68034 * 0.38856 * 16 15 14 18 18 C 1.47020 * 125.76060 * 179.87106 * 17 16 15 19 19 C 1.36173 * 125.33309 * 359.71804 * 18 17 16 20 20 C 1.37731 * 114.44571 * 179.97438 * 19 18 17 21 21 C 1.33716 * 115.18951 * 0.02562 * 20 19 18 22 22 S 1.75825 * 109.96205 * 359.97438 * 21 20 19 23 23 N 1.31515 * 108.47849 * 359.61015 * 17 16 15 24 24 H 1.09005 * 109.47259 * 299.65371 * 1 2 3 25 25 H 1.09001 * 109.47020 * 59.65257 * 1 2 3 26 26 H 1.09003 * 109.47183 * 179.65520 * 1 2 3 27 27 H 1.09002 * 109.46790 * 240.00143 * 2 1 3 28 28 H 1.09000 * 109.46708 * 119.99977 * 2 1 3 29 29 H 1.08995 * 109.47000 * 52.92359 * 4 3 2 30 30 H 1.09000 * 109.47098 * 172.92652 * 4 3 2 31 31 H 0.97001 * 119.99750 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.47238 * 306.03932 * 13 3 2 33 33 H 1.09008 * 109.47087 * 186.04346 * 13 3 2 34 34 H 1.07998 * 126.33393 * 0.04191 * 15 14 13 35 35 H 1.08008 * 122.78097 * 0.02562 * 19 18 17 36 36 H 1.07994 * 122.40639 * 180.02562 * 20 19 18 37 37 H 1.07997 * 125.01833 * 180.26378 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5883 2.0959 -1.2110 5 6 2.2703 1.4977 -2.4144 6 1 3.0161 0.7274 -2.2851 7 6 1.9422 1.9339 -3.6806 8 7 1.0343 2.8724 -3.8380 9 14 2.7870 1.1920 -5.1723 10 1 3.7609 0.1624 -4.7285 11 1 1.7715 0.5642 -6.0551 12 1 3.5001 2.2593 -5.9190 13 6 1.5870 2.0963 1.2102 14 6 2.2482 1.4824 2.4172 15 6 3.3825 1.9082 3.0006 16 8 3.6271 1.0923 4.0468 17 6 2.6458 0.1729 4.0862 18 6 2.5250 -0.9133 5.0696 19 6 3.3961 -1.1538 6.0883 20 6 3.0656 -2.2326 6.8781 21 6 1.9470 -2.8748 6.5254 22 16 1.2326 -2.1054 5.1150 23 7 1.8097 0.4131 3.0998 24 1 -0.3634 0.5085 0.8931 25 1 -0.3633 0.5192 -0.8869 26 1 -0.3634 -1.0277 -0.0062 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5080 2.0024 -1.3219 30 1 1.8553 3.1494 -1.1284 31 1 0.8037 3.1795 -4.7288 32 1 0.5044 2.0185 1.3100 33 1 1.8704 3.1462 1.1355 34 1 3.9840 2.7502 2.6915 35 1 4.2732 -0.5482 6.2629 36 1 3.6666 -2.5379 7.7218 37 1 1.5398 -3.7357 7.0346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081054243.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:24 Heat of formation + Delta-G solvation = 67.800738 kcal Electronic energy + Delta-G solvation = -20398.225044 eV Core-core repulsion = 17269.503010 eV Total energy + Delta-G solvation = -3128.722034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.09842 -37.91555 -37.33878 -34.55988 -32.60907 -31.81974 -29.70320 -28.72071 -27.09230 -24.93557 -24.66939 -23.10592 -22.02780 -21.42067 -19.65701 -18.82001 -18.08005 -16.57214 -16.51880 -16.13727 -15.75817 -15.00361 -14.82195 -14.39378 -14.09752 -13.75409 -13.32776 -13.03930 -12.96921 -12.81752 -12.45456 -12.03843 -11.68174 -11.41686 -11.24297 -11.12961 -11.02628 -10.79369 -10.66517 -10.55216 -10.33215 -9.97133 -9.80192 -9.60755 -9.18566 -8.75508 -8.41976 -8.13101 -7.17151 -6.01222 -4.01703 0.25062 1.13260 1.72470 1.73458 2.40670 2.90729 3.01307 3.32008 3.39566 3.44977 3.89554 4.45030 4.75897 4.95545 5.06923 5.12825 5.23157 5.28058 5.34623 5.63008 5.70443 5.91861 5.94095 5.97322 6.02208 6.09158 6.11434 6.23368 6.32361 6.41694 6.66114 6.77569 7.04315 7.31237 7.47564 7.80739 7.83314 8.10124 8.22386 8.56447 9.06764 9.62293 11.09472 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028296 B = 0.003332 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.304713 B = 8402.335609 C = 8705.999537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.064 3.936 3 N -0.531 5.531 4 C 0.188 3.812 5 C -0.502 4.502 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.124 3.876 14 C 0.019 3.981 15 C -0.057 4.057 16 O -0.197 6.197 17 C 0.239 3.761 18 C -0.122 4.122 19 C -0.107 4.107 20 C -0.137 4.137 21 C -0.224 4.224 22 S 0.211 5.789 23 N -0.454 5.454 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.006 0.994 30 H 0.025 0.975 31 H 0.260 0.740 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.220 0.780 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.117 -7.798 21.395 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.065 4.065 3 N -0.256 5.256 4 C 0.063 3.937 5 C -0.541 4.541 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.004 4.004 14 C -0.103 4.103 15 C -0.128 4.128 16 O -0.083 6.083 17 C 0.035 3.965 18 C -0.241 4.241 19 C -0.141 4.141 20 C -0.167 4.167 21 C -0.361 4.361 22 S 0.476 5.524 23 N -0.185 5.185 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.024 0.976 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.237 0.763 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.723 -8.340 20.265 21.926 hybrid contribution 1.465 0.478 0.010 1.542 sum 2.188 -7.862 20.275 21.855 Atomic orbital electron populations 1.22308 0.99233 1.00919 1.01691 1.21928 0.92354 0.90924 1.01257 1.62392 1.59256 1.02308 1.01600 1.19810 0.94996 0.93600 0.85266 1.21171 1.21740 1.21190 0.89985 0.91908 1.24976 0.95322 0.95295 0.99027 1.69968 1.32103 1.29268 1.22573 0.86469 0.79387 0.79079 0.82668 1.19683 1.21149 1.21069 1.20414 0.96964 0.96849 0.86204 1.21847 0.95386 0.94054 0.99002 1.24963 1.00319 0.98592 0.88967 1.84510 1.45138 1.34757 1.43909 1.22260 0.85912 0.92141 0.96173 1.21458 1.03295 0.99773 0.99584 1.20642 1.00341 0.98895 0.94218 1.19951 0.98067 0.96534 1.02112 1.26073 1.01393 1.06078 1.02530 1.84586 1.22694 1.20056 1.25015 1.70748 1.27371 1.15567 1.04788 0.93398 0.91658 0.93611 0.90545 0.92508 0.97647 0.95677 0.93037 0.93316 0.89701 0.76325 0.83556 0.83741 0.81277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.58 9.26 37.16 0.34 -3.24 16 2 C 0.06 1.34 5.70 -3.83 -0.02 1.31 16 3 N -0.53 -11.61 4.68 -237.53 -1.11 -12.72 16 4 C 0.19 4.81 4.53 -4.98 -0.02 4.79 16 5 C -0.50 -14.05 8.40 -34.44 -0.29 -14.33 16 6 H 0.06 1.77 7.38 -52.49 -0.39 1.38 16 7 C 0.05 1.55 5.46 -17.81 -0.10 1.45 16 8 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 9 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.12 2.30 5.29 -4.98 -0.03 2.27 16 14 C 0.02 0.32 5.83 -82.88 -0.48 -0.16 16 15 C -0.06 -0.83 12.08 29.40 0.36 -0.47 16 16 O -0.20 -2.91 10.79 3.39 0.04 -2.88 16 17 C 0.24 3.69 8.08 -14.13 -0.11 3.57 16 18 C -0.12 -1.56 6.46 -36.77 -0.24 -1.79 16 19 C -0.11 -1.09 10.15 -40.51 -0.41 -1.50 16 20 C -0.14 -1.11 10.15 -41.35 -0.42 -1.53 16 21 C -0.22 -1.78 11.21 29.15 0.33 -1.45 16 22 S 0.21 2.27 23.30 -107.50 -2.50 -0.24 16 23 N -0.45 -7.81 10.27 -8.13 -0.08 -7.90 16 24 H 0.05 0.90 6.34 -51.93 -0.33 0.57 16 25 H 0.06 1.42 6.28 -51.93 -0.33 1.10 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.73 6.98 -51.93 -0.36 1.36 16 28 H 0.06 1.16 6.42 -51.93 -0.33 0.82 16 29 H 0.01 0.16 6.01 -51.93 -0.31 -0.16 16 30 H 0.03 0.68 7.91 -51.93 -0.41 0.26 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.05 0.92 6.07 -51.93 -0.32 0.60 16 33 H 0.08 1.44 7.92 -51.92 -0.41 1.03 16 34 H 0.22 2.41 8.06 -52.49 -0.42 1.98 16 35 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 36 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 325.76 15.07 4.91 4.91 Total: -1.00 -31.47 325.76 -8.57 -40.04 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.44 Total: -1.05 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -1.10 Total: -11.08 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.46 Total: -46.41 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.50 Total: -0.24 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.47 -8.57 -40.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081054243.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.839 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds