Wall clock time and date at job start Tue Mar 31 2020 06:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46895 * 109.46877 * 2 1 4 4 C 1.46903 * 111.00241 * 297.98775 * 3 2 1 5 5 C 1.50695 * 109.47091 * 292.92437 * 4 3 2 6 6 H 1.08001 * 120.00323 * 354.96352 * 5 4 3 7 7 C 1.37887 * 120.00260 * 174.95951 * 5 4 3 8 8 N 1.31519 * 119.99462 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00382 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46969 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47199 * 120.00058 * 9 7 5 12 12 H 1.48497 * 109.46997 * 240.00197 * 9 7 5 13 13 C 1.46896 * 111.00182 * 61.94606 * 3 2 1 14 14 C 1.50695 * 109.47413 * 66.04637 * 13 3 2 15 15 C 1.34473 * 126.05652 * 94.97775 * 14 13 3 16 16 O 1.34909 * 107.33198 * 179.79751 * 15 14 13 17 17 C 1.34534 * 107.68034 * 0.38856 * 16 15 14 18 18 C 1.47020 * 125.76060 * 179.87106 * 17 16 15 19 19 C 1.36173 * 125.33309 * 359.71804 * 18 17 16 20 20 C 1.37731 * 114.44571 * 179.97438 * 19 18 17 21 21 C 1.33716 * 115.18951 * 0.02562 * 20 19 18 22 22 S 1.75825 * 109.96205 * 359.97438 * 21 20 19 23 23 N 1.31515 * 108.47849 * 359.61015 * 17 16 15 24 24 H 1.09005 * 109.47259 * 299.65371 * 1 2 3 25 25 H 1.09001 * 109.47020 * 59.65257 * 1 2 3 26 26 H 1.09003 * 109.47183 * 179.65520 * 1 2 3 27 27 H 1.09002 * 109.46790 * 240.00143 * 2 1 3 28 28 H 1.09000 * 109.46708 * 119.99977 * 2 1 3 29 29 H 1.08995 * 109.47000 * 52.92359 * 4 3 2 30 30 H 1.09000 * 109.47098 * 172.92652 * 4 3 2 31 31 H 0.97001 * 119.99750 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.47238 * 306.03932 * 13 3 2 33 33 H 1.09008 * 109.47087 * 186.04346 * 13 3 2 34 34 H 1.07998 * 126.33393 * 0.04191 * 15 14 13 35 35 H 1.08008 * 122.78097 * 0.02562 * 19 18 17 36 36 H 1.07994 * 122.40639 * 180.02562 * 20 19 18 37 37 H 1.07997 * 125.01833 * 180.26378 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5883 2.0959 -1.2110 5 6 2.2703 1.4977 -2.4144 6 1 3.0161 0.7274 -2.2851 7 6 1.9422 1.9339 -3.6806 8 7 1.0343 2.8724 -3.8380 9 14 2.7870 1.1920 -5.1723 10 1 3.7609 0.1624 -4.7285 11 1 1.7715 0.5642 -6.0551 12 1 3.5001 2.2593 -5.9190 13 6 1.5870 2.0963 1.2102 14 6 2.2482 1.4824 2.4172 15 6 3.3825 1.9082 3.0006 16 8 3.6271 1.0923 4.0468 17 6 2.6458 0.1729 4.0862 18 6 2.5250 -0.9133 5.0696 19 6 3.3961 -1.1538 6.0883 20 6 3.0656 -2.2326 6.8781 21 6 1.9470 -2.8748 6.5254 22 16 1.2326 -2.1054 5.1150 23 7 1.8097 0.4131 3.0998 24 1 -0.3634 0.5085 0.8931 25 1 -0.3633 0.5192 -0.8869 26 1 -0.3634 -1.0277 -0.0062 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5080 2.0024 -1.3219 30 1 1.8553 3.1494 -1.1284 31 1 0.8037 3.1795 -4.7288 32 1 0.5044 2.0185 1.3100 33 1 1.8704 3.1462 1.1355 34 1 3.9840 2.7502 2.6915 35 1 4.2732 -0.5482 6.2629 36 1 3.6666 -2.5379 7.7218 37 1 1.5398 -3.7357 7.0346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081054243.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:24 Heat of formation + Delta-G solvation = 46.067521 kcal Electronic energy + Delta-G solvation = -20399.167467 eV Core-core repulsion = 17269.503010 eV Total energy + Delta-G solvation = -3129.664458 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.25962 -39.08136 -38.60296 -35.86246 -34.66227 -32.95082 -31.20130 -30.19004 -28.64925 -26.45654 -25.63162 -25.01261 -23.05179 -22.75360 -21.14510 -19.80621 -19.03949 -18.35697 -17.77084 -17.52084 -16.85078 -16.58235 -16.48224 -15.97451 -15.51960 -14.82687 -14.67579 -14.41025 -14.09115 -13.90519 -13.64723 -13.33807 -13.21018 -13.14454 -12.89357 -12.79032 -12.55419 -12.50618 -12.14134 -11.91913 -11.77674 -11.62226 -11.50565 -11.27901 -10.65056 -10.56620 -9.53671 -9.15092 -8.96338 -8.18016 -6.26653 -0.59207 0.32258 0.70772 1.01294 1.40698 1.41437 1.48695 1.55093 1.85965 1.97014 2.41924 2.82226 3.14717 3.47330 3.74185 3.98971 4.17741 4.26536 4.31128 4.41764 4.51979 4.58639 4.59956 4.68355 4.76977 4.86227 4.94921 4.95861 5.03966 5.15288 5.22535 5.30582 5.34867 5.42665 5.48889 5.68720 6.07704 6.31952 6.61362 6.64823 6.89097 7.42230 8.92599 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028296 B = 0.003332 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.304713 B = 8402.335609 C = 8705.999537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.071 3.929 3 N -0.536 5.536 4 C 0.204 3.796 5 C -0.517 4.517 6 H 0.056 0.944 7 C 0.005 3.995 8 N -0.932 5.932 9 Si 0.964 3.036 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.277 1.277 13 C 0.131 3.869 14 C -0.011 4.011 15 C -0.044 4.044 16 O -0.196 6.196 17 C 0.244 3.756 18 C -0.170 4.170 19 C -0.087 4.087 20 C -0.143 4.143 21 C -0.193 4.193 22 S 0.173 5.827 23 N -0.485 5.485 24 H 0.053 0.947 25 H 0.037 0.963 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.065 0.935 29 H -0.017 1.017 30 H 0.008 0.992 31 H 0.264 0.736 32 H 0.040 0.960 33 H 0.096 0.904 34 H 0.252 0.748 35 H 0.158 0.842 36 H 0.180 0.820 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 -9.306 23.244 25.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.058 4.058 3 N -0.260 5.260 4 C 0.078 3.922 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.193 4.193 8 N -0.573 5.573 9 Si 0.789 3.211 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.002 3.998 14 C -0.132 4.132 15 C -0.115 4.115 16 O -0.083 6.083 17 C 0.040 3.960 18 C -0.288 4.288 19 C -0.122 4.122 20 C -0.172 4.172 21 C -0.330 4.330 22 S 0.438 5.562 23 N -0.216 5.216 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.001 0.999 30 H 0.026 0.974 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.114 0.886 34 H 0.268 0.732 35 H 0.176 0.824 36 H 0.197 0.803 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.068 -9.847 22.121 24.302 hybrid contribution 1.063 0.862 -0.362 1.415 sum 3.131 -8.986 21.760 23.749 Atomic orbital electron populations 1.22155 0.98249 1.01876 1.00529 1.21823 0.93082 0.90366 1.00504 1.62280 1.59508 1.02623 1.01611 1.19462 0.93309 0.92831 0.86602 1.21421 1.21786 1.21146 0.91224 0.92564 1.25816 0.95893 0.95610 1.02013 1.70079 1.33317 1.30423 1.23465 0.85408 0.78405 0.78418 0.78837 1.19123 1.20548 1.20275 1.20328 0.96693 0.97280 0.85462 1.21619 0.96863 0.95349 0.99371 1.25473 0.99457 0.98575 0.87996 1.84530 1.45062 1.34793 1.43919 1.22770 0.85161 0.92204 0.95890 1.21593 1.05448 1.00715 1.01013 1.21012 0.99552 0.98791 0.92832 1.20301 0.98460 0.95685 1.02746 1.26509 1.00385 1.05879 1.00263 1.84694 1.23409 1.20683 1.27401 1.70675 1.28605 1.16289 1.06004 0.92847 0.94344 0.91554 0.92602 0.91664 0.99949 0.97412 0.92748 0.94161 0.88599 0.73197 0.82405 0.80293 0.77910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.81 9.26 71.98 0.67 -6.14 16 2 C 0.07 3.03 5.70 86.30 0.49 3.52 16 3 N -0.54 -24.04 4.68 -905.40 -4.24 -28.28 16 4 C 0.20 10.82 4.53 85.55 0.39 11.21 16 5 C -0.52 -29.57 8.40 25.60 0.21 -29.36 16 6 H 0.06 3.23 7.38 -2.91 -0.02 3.21 16 7 C 0.00 0.27 5.46 84.66 0.46 0.73 16 8 N -0.93 -55.93 13.29 21.45 0.28 -55.65 16 9 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 C 0.13 4.93 5.29 85.56 0.45 5.38 16 14 C -0.01 -0.38 5.83 41.33 0.24 -0.14 16 15 C -0.04 -1.23 12.08 66.96 0.81 -0.42 16 16 O -0.20 -5.63 10.79 -10.79 -0.12 -5.74 16 17 C 0.24 7.45 8.08 87.04 0.70 8.15 16 18 C -0.17 -4.15 6.46 24.09 0.16 -3.99 16 19 C -0.09 -1.55 10.15 21.67 0.22 -1.33 16 20 C -0.14 -1.78 10.15 21.12 0.21 -1.56 16 21 C -0.19 -2.41 11.21 66.79 0.75 -1.67 16 22 S 0.17 3.55 23.30 -56.49 -1.32 2.23 16 23 N -0.49 -16.85 10.27 -293.49 -3.01 -19.86 16 24 H 0.05 2.06 6.34 -2.38 -0.02 2.05 16 25 H 0.04 1.73 6.28 -2.39 -0.01 1.72 16 26 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.06 2.60 6.98 -2.39 -0.02 2.58 16 28 H 0.07 2.70 6.42 -2.39 -0.02 2.69 16 29 H -0.02 -0.98 6.01 -2.39 -0.01 -1.00 16 30 H 0.01 0.44 7.91 -2.39 -0.02 0.42 16 31 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 32 H 0.04 1.57 6.07 -2.39 -0.01 1.56 16 33 H 0.10 3.32 7.92 -2.38 -0.02 3.30 16 34 H 0.25 5.04 8.06 -2.91 -0.02 5.01 16 35 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 37 H 0.20 1.12 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -69.29 325.76 0.48 -68.81 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 1.09 Total: 7.27 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 5.77 Total: -15.63 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -6.97 Total: -103.79 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.12 Total: -5.74 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -1.32 Total: 2.23 kcal Total: -69.29 0.48 -68.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081054243.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.877 kcal (2) G-P(sol) polarization free energy of solvation -69.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds