Wall clock time and date at job start Tue Mar 31 2020 06:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46895 * 109.47426 * 2 1 4 4 C 1.46900 * 111.00071 * 298.14205 * 3 2 1 5 5 C 1.50696 * 109.46714 * 293.95237 * 4 3 2 6 6 H 1.08000 * 120.00369 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99930 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00071 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47196 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47314 * 120.00225 * 9 7 5 12 12 H 1.48504 * 109.46928 * 240.00109 * 9 7 5 13 13 C 1.46900 * 111.00066 * 62.09659 * 3 2 1 14 14 C 1.50699 * 109.47397 * 71.56835 * 13 3 2 15 15 C 1.33691 * 122.05817 * 94.65815 * 14 13 3 16 16 S 1.76242 * 108.26241 * 180.02562 * 15 14 13 17 17 C 1.76174 * 89.85853 * 359.97438 * 16 15 14 18 18 C 1.47102 * 125.48498 * 179.97438 * 17 16 15 19 19 C 1.36264 * 125.95765 * 359.97438 * 18 17 16 20 20 C 1.40790 * 106.72226 * 179.97438 * 19 18 17 21 21 C 1.34822 * 107.07348 * 0.02562 * 20 19 18 22 22 O 1.34280 * 108.72328 * 359.73250 * 21 20 19 23 23 N 1.30487 * 109.03006 * 359.74798 * 17 16 15 24 24 H 1.08991 * 109.47495 * 178.84393 * 1 2 3 25 25 H 1.09001 * 109.46817 * 298.84729 * 1 2 3 26 26 H 1.09003 * 109.46458 * 58.83970 * 1 2 3 27 27 H 1.08996 * 109.46907 * 239.99512 * 2 1 3 28 28 H 1.09003 * 109.46577 * 119.99975 * 2 1 3 29 29 H 1.08991 * 109.47006 * 53.95456 * 4 3 2 30 30 H 1.09002 * 109.47013 * 173.95765 * 4 3 2 31 31 H 0.96996 * 120.00309 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.47466 * 191.57213 * 13 3 2 33 33 H 1.09003 * 109.46757 * 311.56681 * 13 3 2 34 34 H 1.07996 * 125.86865 * 359.97438 * 15 14 13 35 35 H 1.07997 * 126.63970 * 0.02562 * 19 18 17 36 36 H 1.07999 * 126.46478 * 180.02562 * 20 19 18 37 37 H 1.08000 * 125.64110 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.5854 2.0969 -1.2093 5 6 2.2450 1.4834 -2.4174 6 1 2.9196 0.6485 -2.2988 7 6 1.9879 1.9888 -3.6743 8 7 1.1676 3.0065 -3.8187 9 14 2.8049 1.2279 -5.1720 10 1 3.6767 0.1048 -4.7433 11 1 1.7627 0.7198 -6.0998 12 1 3.6252 2.2546 -5.8635 13 6 1.5902 2.0952 1.2120 14 6 2.3555 1.5708 2.3995 15 6 3.4711 2.1602 2.8414 16 16 4.0606 1.2539 4.2332 17 6 2.7050 0.1397 4.0763 18 6 2.4465 -1.0186 4.9455 19 6 3.2104 -1.4112 6.0034 20 6 2.5962 -2.5573 6.5433 21 6 1.5006 -2.8073 5.7985 22 8 1.4100 -1.8732 4.8380 23 7 1.9644 0.5100 3.0677 24 1 -0.3634 -1.0273 -0.0207 25 1 -0.3633 0.4958 0.9002 26 1 -0.3632 0.5318 -0.8795 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 0.5028 2.0191 -1.3076 30 1 1.8690 3.1467 -1.1344 31 1 0.9864 3.3618 -4.7029 32 1 1.7847 3.1615 1.0965 33 1 0.5233 1.9354 1.3678 34 1 3.9324 3.0400 2.4177 35 1 4.1119 -0.9350 6.3594 36 1 2.9382 -3.1285 7.3937 37 1 0.8075 -3.6212 5.9520 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:26 Heat of formation + Delta-G solvation = 73.149383 kcal Electronic energy + Delta-G solvation = -20439.923181 eV Core-core repulsion = 17311.433081 eV Total energy + Delta-G solvation = -3128.490100 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.70039 -39.70255 -36.83150 -33.34874 -32.66921 -31.92424 -29.73107 -28.83359 -27.46090 -25.37198 -24.32140 -23.02055 -22.08048 -21.10106 -19.74312 -18.93535 -18.18494 -17.06860 -16.30170 -16.16781 -15.66922 -15.17061 -14.84786 -14.19019 -14.09154 -13.64260 -13.37142 -13.17117 -13.10473 -12.80682 -12.72767 -12.29062 -11.80120 -11.57990 -11.23221 -11.01603 -10.84890 -10.66433 -10.52905 -10.26722 -9.96461 -9.89355 -9.74795 -9.59268 -9.21550 -9.12355 -8.41939 -8.06423 -7.17111 -6.01176 -4.01499 0.26705 1.04678 1.66304 1.72018 2.33167 2.91955 3.08555 3.32116 3.39616 3.45046 3.88078 4.45145 4.69222 4.69820 4.96456 5.21923 5.32806 5.36468 5.43149 5.52941 5.54725 5.71121 5.93369 5.94659 6.04821 6.14903 6.20070 6.28990 6.32760 6.65906 6.76377 6.83603 7.03465 7.31638 7.45922 7.79472 7.82434 8.09841 8.23597 8.56294 9.06254 9.62317 11.09706 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024361 B = 0.003605 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.101463 B = 7765.299366 C = 8235.180676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.063 3.937 3 N -0.530 5.530 4 C 0.189 3.811 5 C -0.502 4.502 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.116 3.884 14 C 0.091 3.909 15 C -0.222 4.222 16 S 0.109 5.891 17 C 0.114 3.886 18 C 0.063 3.937 19 C -0.177 4.177 20 C -0.213 4.213 21 C -0.023 4.023 22 O -0.150 6.150 23 N -0.434 5.434 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.001 0.999 30 H 0.028 0.972 31 H 0.260 0.740 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.185 0.815 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.184 -6.983 21.187 22.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.066 4.066 3 N -0.253 5.253 4 C 0.064 3.936 5 C -0.541 4.541 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.015 4.015 14 C -0.041 4.041 15 C -0.361 4.361 16 S 0.363 5.637 17 C -0.160 4.160 18 C 0.009 3.991 19 C -0.200 4.200 20 C -0.233 4.233 21 C -0.094 4.094 22 O -0.045 6.045 23 N -0.149 5.149 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.019 0.981 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.202 0.798 35 H 0.171 0.829 36 H 0.172 0.828 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.805 -6.988 21.320 22.756 hybrid contribution -0.790 -0.075 -1.461 1.663 sum 3.015 -7.064 19.858 21.292 Atomic orbital electron populations 1.22313 0.99260 1.00977 1.01664 1.21948 0.92342 0.90954 1.01310 1.62348 1.59232 1.02245 1.01521 1.19813 0.94652 0.93817 0.85286 1.21172 1.26371 1.16179 0.90347 0.91914 1.24968 0.95448 0.95171 0.99023 1.69960 1.36103 1.24757 1.23099 0.86469 0.79222 0.79207 0.82706 1.19694 1.21143 1.21064 1.20719 0.96023 0.97800 0.86990 1.20282 0.94894 0.91142 0.97797 1.26929 1.01115 1.07420 1.00631 1.84607 1.27487 1.21806 1.29805 1.24145 0.96230 0.98209 0.97424 1.18993 0.90281 0.92278 0.97551 1.21789 1.02187 0.99136 0.96914 1.21716 0.97807 0.99897 1.03834 1.24315 1.00878 0.94403 0.89764 1.84227 1.41481 1.32452 1.46308 1.66629 1.29597 1.13977 1.04688 0.93576 0.93408 0.91609 0.90500 0.92469 0.98081 0.95347 0.93032 0.89687 0.93077 0.79788 0.82853 0.82781 0.77535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.62 9.28 37.16 0.34 -3.27 16 2 C 0.06 1.33 5.72 -3.82 -0.02 1.31 16 3 N -0.53 -11.65 4.65 -237.52 -1.10 -12.76 16 4 C 0.19 4.87 4.50 -4.98 -0.02 4.84 16 5 C -0.50 -14.09 8.49 -34.44 -0.29 -14.38 16 6 H 0.06 1.77 7.11 -52.49 -0.37 1.40 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 9 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.12 2.16 5.24 -4.98 -0.03 2.14 16 14 C 0.09 1.55 5.69 -84.40 -0.48 1.07 16 15 C -0.22 -3.15 11.06 29.14 0.32 -2.83 16 16 S 0.11 1.31 23.19 -107.50 -2.49 -1.18 16 17 C 0.11 1.70 7.50 -14.53 -0.11 1.59 16 18 C 0.06 0.85 7.24 -36.70 -0.27 0.58 16 19 C -0.18 -1.85 10.64 -39.33 -0.42 -2.27 16 20 C -0.21 -1.85 10.88 -39.83 -0.43 -2.28 16 21 C -0.02 -0.21 12.08 29.52 0.36 0.15 16 22 O -0.15 -2.03 10.68 4.46 0.05 -1.98 16 23 N -0.43 -7.51 9.43 -7.73 -0.07 -7.58 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.91 6.28 -51.93 -0.33 0.58 16 26 H 0.06 1.43 6.26 -51.93 -0.33 1.11 16 27 H 0.08 1.74 6.81 -51.93 -0.35 1.39 16 28 H 0.06 1.18 6.56 -51.93 -0.34 0.84 16 29 H 0.00 0.04 6.03 -51.93 -0.31 -0.27 16 30 H 0.03 0.77 7.87 -51.93 -0.41 0.36 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.08 1.49 7.76 -51.93 -0.40 1.09 16 33 H 0.05 0.97 5.87 -51.93 -0.31 0.67 16 34 H 0.18 2.25 8.06 -52.49 -0.42 1.83 16 35 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.21 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 325.11 15.07 4.90 4.90 Total: -1.00 -31.90 325.11 -8.55 -40.45 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -4.40 Total: -0.83 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -1.14 Total: -11.91 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.44 Total: -46.21 kcal Atomic # 8 Polarization: -2.03 SS G_CDS: 0.05 Total: -1.98 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.49 Total: -1.18 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.90 -8.55 -40.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.601 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds