Wall clock time and date at job start Tue Mar 31 2020 06:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46895 * 109.47426 * 2 1 4 4 C 1.46900 * 111.00071 * 298.14205 * 3 2 1 5 5 C 1.50696 * 109.46714 * 293.95237 * 4 3 2 6 6 H 1.08000 * 120.00369 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99930 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00071 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47196 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47314 * 120.00225 * 9 7 5 12 12 H 1.48504 * 109.46928 * 240.00109 * 9 7 5 13 13 C 1.46900 * 111.00066 * 62.09659 * 3 2 1 14 14 C 1.50699 * 109.47397 * 71.56835 * 13 3 2 15 15 C 1.33691 * 122.05817 * 94.65815 * 14 13 3 16 16 S 1.76242 * 108.26241 * 180.02562 * 15 14 13 17 17 C 1.76174 * 89.85853 * 359.97438 * 16 15 14 18 18 C 1.47102 * 125.48498 * 179.97438 * 17 16 15 19 19 C 1.36264 * 125.95765 * 359.97438 * 18 17 16 20 20 C 1.40790 * 106.72226 * 179.97438 * 19 18 17 21 21 C 1.34822 * 107.07348 * 0.02562 * 20 19 18 22 22 O 1.34280 * 108.72328 * 359.73250 * 21 20 19 23 23 N 1.30487 * 109.03006 * 359.74798 * 17 16 15 24 24 H 1.08991 * 109.47495 * 178.84393 * 1 2 3 25 25 H 1.09001 * 109.46817 * 298.84729 * 1 2 3 26 26 H 1.09003 * 109.46458 * 58.83970 * 1 2 3 27 27 H 1.08996 * 109.46907 * 239.99512 * 2 1 3 28 28 H 1.09003 * 109.46577 * 119.99975 * 2 1 3 29 29 H 1.08991 * 109.47006 * 53.95456 * 4 3 2 30 30 H 1.09002 * 109.47013 * 173.95765 * 4 3 2 31 31 H 0.96996 * 120.00309 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.47466 * 191.57213 * 13 3 2 33 33 H 1.09003 * 109.46757 * 311.56681 * 13 3 2 34 34 H 1.07996 * 125.86865 * 359.97438 * 15 14 13 35 35 H 1.07997 * 126.63970 * 0.02562 * 19 18 17 36 36 H 1.07999 * 126.46478 * 180.02562 * 20 19 18 37 37 H 1.08000 * 125.64110 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.5854 2.0969 -1.2093 5 6 2.2450 1.4834 -2.4174 6 1 2.9196 0.6485 -2.2988 7 6 1.9879 1.9888 -3.6743 8 7 1.1676 3.0065 -3.8187 9 14 2.8049 1.2279 -5.1720 10 1 3.6767 0.1048 -4.7433 11 1 1.7627 0.7198 -6.0998 12 1 3.6252 2.2546 -5.8635 13 6 1.5902 2.0952 1.2120 14 6 2.3555 1.5708 2.3995 15 6 3.4711 2.1602 2.8414 16 16 4.0606 1.2539 4.2332 17 6 2.7050 0.1397 4.0763 18 6 2.4465 -1.0186 4.9455 19 6 3.2104 -1.4112 6.0034 20 6 2.5962 -2.5573 6.5433 21 6 1.5006 -2.8073 5.7985 22 8 1.4100 -1.8732 4.8380 23 7 1.9644 0.5100 3.0677 24 1 -0.3634 -1.0273 -0.0207 25 1 -0.3633 0.4958 0.9002 26 1 -0.3632 0.5318 -0.8795 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 0.5028 2.0191 -1.3076 30 1 1.8690 3.1467 -1.1344 31 1 0.9864 3.3618 -4.7029 32 1 1.7847 3.1615 1.0965 33 1 0.5233 1.9354 1.3678 34 1 3.9324 3.0400 2.4177 35 1 4.1119 -0.9350 6.3594 36 1 2.9382 -3.1285 7.3937 37 1 0.8075 -3.6212 5.9520 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081514069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:26 Heat of formation + Delta-G solvation = 52.203327 kcal Electronic energy + Delta-G solvation = -20440.831470 eV Core-core repulsion = 17311.433081 eV Total energy + Delta-G solvation = -3129.398389 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.50437 -40.91906 -38.51654 -34.76683 -34.15179 -33.07291 -31.17633 -30.24821 -29.06013 -26.88238 -25.59483 -24.91096 -22.87751 -22.23894 -21.16086 -20.13937 -19.17949 -18.37039 -18.05226 -17.21480 -16.91326 -16.72863 -16.42678 -15.93867 -15.38056 -15.06887 -14.56789 -14.45049 -14.19595 -13.85939 -13.85423 -13.50676 -13.44639 -13.16786 -13.04829 -12.73601 -12.56968 -12.53233 -12.25883 -11.87174 -11.59433 -11.29827 -11.09068 -10.81717 -10.68344 -10.59482 -10.17422 -9.03282 -8.93837 -8.18721 -6.27312 -0.73547 0.04786 0.57735 0.80675 1.40357 1.40988 1.53558 1.55300 1.97623 2.14169 2.41595 2.90736 3.13918 3.47488 3.86631 3.99760 4.04777 4.15596 4.25735 4.32187 4.41421 4.53913 4.63233 4.70309 4.79335 4.86935 4.93381 4.97032 5.00085 5.10011 5.21585 5.33458 5.46543 5.51420 5.67463 6.05215 6.06393 6.31988 6.60491 6.71292 6.87879 7.41401 8.92213 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024361 B = 0.003605 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.101463 B = 7765.299366 C = 8235.180676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 N -0.534 5.534 4 C 0.205 3.795 5 C -0.517 4.517 6 H 0.057 0.943 7 C 0.004 3.996 8 N -0.932 5.932 9 Si 0.965 3.035 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.120 3.880 14 C 0.068 3.932 15 C -0.232 4.232 16 S 0.189 5.811 17 C 0.101 3.899 18 C 0.013 3.987 19 C -0.159 4.159 20 C -0.215 4.215 21 C -0.018 4.018 22 O -0.183 6.183 23 N -0.476 5.476 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.039 0.961 27 H 0.057 0.943 28 H 0.065 0.935 29 H -0.021 1.021 30 H 0.008 0.992 31 H 0.264 0.736 32 H 0.090 0.910 33 H 0.043 0.957 34 H 0.200 0.800 35 H 0.174 0.826 36 H 0.188 0.812 37 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.686 -8.526 23.066 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.058 4.058 3 N -0.258 5.258 4 C 0.079 3.921 5 C -0.556 4.556 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.573 5.573 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.203 1.203 13 C -0.011 4.011 14 C -0.065 4.065 15 C -0.372 4.372 16 S 0.444 5.556 17 C -0.172 4.172 18 C -0.040 4.040 19 C -0.182 4.182 20 C -0.234 4.234 21 C -0.088 4.088 22 O -0.079 6.079 23 N -0.191 5.191 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.083 0.917 29 H -0.003 1.003 30 H 0.026 0.974 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.061 0.939 34 H 0.217 0.783 35 H 0.192 0.808 36 H 0.205 0.795 37 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 5.323 -8.530 23.227 25.310 hybrid contribution -1.232 0.312 -1.822 2.222 sum 4.091 -8.218 21.405 23.290 Atomic orbital electron populations 1.22166 0.98278 1.01882 1.00595 1.21840 0.93084 0.90364 1.00557 1.62239 1.59487 1.02567 1.01514 1.19460 0.93016 0.92912 0.86686 1.21424 1.26445 1.16151 0.91569 0.92513 1.25822 0.95938 0.95543 1.02066 1.70074 1.37257 1.25958 1.24024 0.85398 0.78322 0.78494 0.78789 1.19119 1.20482 1.20264 1.20640 0.96026 0.97879 0.86513 1.19936 0.96101 0.92454 0.97967 1.27194 1.00480 1.07890 1.01593 1.84207 1.24876 1.19211 1.27263 1.24603 0.96866 0.98907 0.96857 1.19191 0.92021 0.93358 0.99395 1.22200 1.01876 0.98967 0.95197 1.22155 0.97280 0.99412 1.04546 1.25237 1.01489 0.93826 0.88217 1.84200 1.42182 1.33527 1.48024 1.66554 1.31407 1.14869 1.06320 0.91567 0.92882 0.94154 0.92462 0.91698 1.00300 0.97381 0.92726 0.89205 0.93926 0.78272 0.80829 0.79451 0.73938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.93 9.28 71.98 0.67 -6.27 16 2 C 0.07 3.04 5.72 86.31 0.49 3.53 16 3 N -0.53 -24.38 4.65 -905.38 -4.21 -28.59 16 4 C 0.21 11.03 4.50 85.56 0.39 11.42 16 5 C -0.52 -29.81 8.49 25.60 0.22 -29.59 16 6 H 0.06 3.27 7.11 -2.91 -0.02 3.25 16 7 C 0.00 0.24 5.46 84.66 0.46 0.71 16 8 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 9 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 C 0.12 4.66 5.24 85.56 0.45 5.11 16 14 C 0.07 2.33 5.69 41.60 0.24 2.57 16 15 C -0.23 -6.44 11.06 66.79 0.74 -5.70 16 16 S 0.19 4.21 23.19 -56.49 -1.31 2.90 16 17 C 0.10 2.95 7.50 87.22 0.65 3.60 16 18 C 0.01 0.35 7.24 24.14 0.17 0.52 16 19 C -0.16 -2.91 10.64 22.43 0.24 -2.67 16 20 C -0.22 -2.99 10.88 22.11 0.24 -2.75 16 21 C -0.02 -0.29 12.08 67.04 0.81 0.52 16 22 O -0.18 -4.81 10.68 -6.94 -0.07 -4.89 16 23 N -0.48 -16.68 9.43 -178.36 -1.68 -18.36 16 24 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.05 2.08 6.28 -2.39 -0.01 2.06 16 26 H 0.04 1.83 6.26 -2.39 -0.01 1.81 16 27 H 0.06 2.68 6.81 -2.39 -0.02 2.66 16 28 H 0.06 2.74 6.56 -2.39 -0.02 2.72 16 29 H -0.02 -1.19 6.03 -2.39 -0.01 -1.20 16 30 H 0.01 0.46 7.87 -2.39 -0.02 0.44 16 31 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.09 3.29 7.76 -2.38 -0.02 3.27 16 33 H 0.04 1.70 5.87 -2.39 -0.01 1.69 16 34 H 0.20 4.69 8.06 -2.91 -0.02 4.67 16 35 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 36 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.24 1.57 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -71.02 325.11 1.89 -69.13 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 1.09 Total: 7.72 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 5.77 Total: -19.00 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -5.61 Total: -102.93 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.07 Total: -4.89 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.31 Total: 2.90 kcal Total: -71.02 1.89 -69.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.337 kcal (2) G-P(sol) polarization free energy of solvation -71.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds