Wall clock time and date at job start Tue Mar 31 2020 06:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34820 * 125.64089 * 2 1 4 4 C 1.40786 * 107.07360 * 179.78471 * 3 2 1 5 5 C 1.36254 * 106.72558 * 0.35415 * 4 3 2 6 6 C 1.47101 * 125.96424 * 179.91406 * 5 4 3 7 7 N 1.30492 * 125.48573 * 179.97438 * 6 5 4 8 8 C 1.31330 * 116.96319 * 180.22150 * 7 6 5 9 9 C 1.50706 * 122.05902 * 179.75126 * 8 7 6 10 10 N 1.46902 * 109.46577 * 274.71042 * 9 8 7 11 11 C 1.46891 * 111.00304 * 293.95012 * 10 9 8 12 12 C 1.46901 * 110.99644 * 169.99988 * 10 9 8 13 13 C 1.50700 * 109.47327 * 190.00050 * 12 10 9 14 14 H 1.08006 * 120.00051 * 0.02562 * 13 12 10 15 15 C 1.37876 * 120.00184 * 179.97438 * 13 12 10 16 16 N 1.31509 * 120.00072 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99646 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47154 * 90.00546 * 17 15 13 19 19 H 1.48498 * 109.46844 * 209.99801 * 17 15 13 20 20 H 1.48486 * 109.47387 * 330.00107 * 17 15 13 21 21 C 1.33681 * 115.88201 * 359.47479 * 8 7 6 22 22 S 1.76181 * 125.48220 * 359.68272 * 6 5 4 23 23 O 1.34281 * 125.63943 * 180.02562 * 2 1 3 24 24 H 1.09008 * 109.47329 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47063 * 299.96934 * 1 2 3 26 26 H 1.09001 * 109.47395 * 59.96925 * 1 2 3 27 27 H 1.07996 * 126.46386 * 0.02854 * 3 2 1 28 28 H 1.08004 * 126.63828 * 180.25590 * 4 3 2 29 29 H 1.09000 * 109.47318 * 34.70549 * 9 8 7 30 30 H 1.09000 * 109.47161 * 154.71180 * 9 8 7 31 31 H 1.09003 * 109.47237 * 60.00538 * 11 10 9 32 32 H 1.08998 * 109.47394 * 179.97438 * 11 10 9 33 33 H 1.09003 * 109.47554 * 300.00530 * 11 10 9 34 34 H 1.09000 * 109.47307 * 309.99860 * 12 10 9 35 35 H 1.08997 * 109.47179 * 70.00271 * 12 10 9 36 36 H 0.97000 * 119.99883 * 180.02562 * 16 15 13 37 37 H 1.08004 * 125.87254 * 180.26932 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0957 0.0000 4 6 3.6271 0.6474 0.0051 5 6 3.5834 -0.7145 -0.0002 6 6 4.7456 -1.6162 0.0006 7 7 4.6928 -2.9200 -0.0040 8 6 5.8383 -3.5624 0.0021 9 6 5.9112 -5.0677 0.0033 10 7 5.8145 -5.5613 1.3835 11 6 6.9852 -5.1541 2.1717 12 6 5.6436 -7.0201 1.4100 13 6 5.3039 -7.4609 2.8105 14 1 5.2226 -6.7303 3.6018 15 6 5.0959 -8.7966 3.0815 16 7 5.1944 -9.6862 2.1180 17 14 4.6755 -9.3428 4.8178 18 1 3.2014 -9.3325 4.9967 19 1 5.1917 -10.7169 5.0430 20 1 5.2991 -8.4136 5.7937 21 6 6.9355 -2.7988 0.0013 22 16 6.4330 -1.1095 0.0005 23 8 2.2894 -1.0913 -0.0005 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5134 0.8903 26 1 -0.3634 0.5143 -0.8897 27 1 1.9607 2.1234 0.0004 28 1 4.5141 1.2637 0.0103 29 1 5.0879 -5.4719 -0.5856 30 1 6.8591 -5.3858 -0.4307 31 1 7.0481 -4.0661 2.1934 32 1 6.8877 -5.5323 3.1893 33 1 7.8886 -5.5612 1.7174 34 1 4.8369 -7.3038 0.7342 35 1 6.5693 -7.5002 1.0926 36 1 5.0477 -10.6259 2.3087 37 1 7.9549 -3.1556 0.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083217296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:47 Heat of formation + Delta-G solvation = 67.442005 kcal Electronic energy + Delta-G solvation = -19986.272506 eV Core-core repulsion = 16857.534915 eV Total energy + Delta-G solvation = -3128.737590 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.69951 -39.67243 -36.30902 -33.40538 -32.94915 -32.37794 -30.58028 -27.60124 -27.34627 -26.90105 -24.37180 -23.23096 -22.05030 -20.84689 -20.29006 -19.20612 -18.02671 -16.72056 -16.43583 -16.31596 -15.24886 -15.10442 -14.52625 -14.13889 -14.01395 -13.67144 -13.56501 -13.18869 -13.13761 -13.12619 -13.04476 -12.49084 -12.10405 -11.92316 -11.79180 -11.22646 -10.99978 -10.88618 -10.60707 -10.48557 -10.20625 -9.87963 -9.68057 -9.64343 -9.25599 -9.08539 -8.41666 -7.97966 -7.25301 -6.00883 -4.01834 0.24943 1.02369 1.62696 1.69852 2.33902 2.85200 3.10174 3.34424 3.39958 3.43930 3.87876 4.45230 4.54391 4.74028 4.91687 5.09680 5.13074 5.20150 5.22628 5.35097 5.41344 5.47233 5.55186 5.63578 5.81382 5.89288 6.03998 6.14235 6.25028 6.27882 6.33836 6.73055 6.92559 7.27639 7.31715 7.79467 7.84447 8.08661 8.18903 8.54013 9.05258 9.62022 11.10110 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017003 B = 0.003607 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.375198 B = 7761.076098 C = 8889.347266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.006 3.994 3 C -0.214 4.214 4 C -0.171 4.171 5 C 0.058 3.942 6 C 0.123 3.877 7 N -0.425 5.425 8 C 0.099 3.901 9 C 0.122 3.878 10 N -0.532 5.532 11 C 0.035 3.965 12 C 0.194 3.806 13 C -0.506 4.506 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.243 4.243 22 S 0.107 5.893 23 O -0.146 6.146 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.154 0.846 28 H 0.154 0.846 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.012 0.988 34 H 0.032 0.968 35 H -0.007 1.007 36 H 0.261 0.739 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.711 22.618 -6.668 23.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.047 4.047 3 C -0.233 4.233 4 C -0.194 4.194 5 C 0.004 3.996 6 C -0.152 4.152 7 N -0.139 5.139 8 C -0.034 4.034 9 C -0.010 4.010 10 N -0.257 5.257 11 C -0.113 4.113 12 C 0.070 3.930 13 C -0.544 4.544 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.727 3.273 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.382 4.382 22 S 0.361 5.639 23 O -0.041 6.041 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.172 0.828 28 H 0.171 0.829 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.031 0.969 34 H 0.050 0.950 35 H 0.011 0.989 36 H 0.071 0.929 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.164 22.974 -6.492 23.971 hybrid contribution 0.721 -1.515 0.592 1.779 sum -1.442 21.458 -5.900 22.302 Atomic orbital electron populations 1.20384 0.84688 1.04615 1.03676 1.22740 0.94318 0.83979 1.03688 1.21421 0.92021 0.99617 1.10203 1.21746 0.98841 0.92208 1.06601 1.18885 0.80707 0.90737 1.09248 1.24221 0.93277 0.91253 1.06415 1.66600 1.29637 1.04603 1.13103 1.20275 0.85511 0.98663 0.98977 1.20675 1.01129 0.85783 0.93369 1.62052 1.38801 1.17024 1.07827 1.22272 0.90688 0.98389 0.99996 1.19760 0.95897 0.79149 0.98231 1.21145 1.46920 0.92077 0.94305 0.91871 1.24978 0.95623 0.96606 0.97384 1.69956 1.50194 1.01749 1.31985 0.86485 0.78693 0.77694 0.84470 1.20592 1.21318 1.19882 1.26932 1.04365 0.93846 1.13072 1.84569 1.00672 1.08152 1.70479 1.84192 1.15225 1.34438 1.70283 0.90109 0.89329 0.89389 0.82806 0.82855 0.89360 0.93828 0.93854 0.90522 0.96943 0.94962 0.98911 0.92923 0.80155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.41 36.00 0.37 -0.17 16 2 C 0.01 0.07 7.31 -35.52 -0.26 -0.19 16 3 C -0.21 -2.12 10.78 -39.83 -0.43 -2.55 16 4 C -0.17 -1.93 10.64 -39.33 -0.42 -2.35 16 5 C 0.06 0.85 7.24 -36.70 -0.27 0.58 16 6 C 0.12 1.93 7.50 -14.53 -0.11 1.83 16 7 N -0.43 -7.95 10.57 -7.72 -0.08 -8.03 16 8 C 0.10 1.72 5.53 -84.40 -0.47 1.26 16 9 C 0.12 2.34 5.38 -4.97 -0.03 2.31 16 10 N -0.53 -12.12 4.74 -245.83 -1.17 -13.29 16 11 C 0.04 0.71 9.06 60.06 0.54 1.25 16 12 C 0.19 5.19 4.72 -4.98 -0.02 5.17 16 13 C -0.51 -14.58 8.46 -34.44 -0.29 -14.87 16 14 H 0.06 1.82 7.12 -52.48 -0.37 1.44 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 17 Si 0.90 22.07 29.54 -169.99 -5.02 17.04 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.24 -3.39 9.79 29.13 0.29 -3.10 16 22 S 0.11 1.30 23.19 -107.50 -2.49 -1.19 16 23 O -0.15 -2.23 10.68 4.47 0.05 -2.18 16 24 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 25 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 28 H 0.15 1.35 8.06 -52.48 -0.42 0.92 16 29 H 0.09 1.76 7.93 -51.93 -0.41 1.35 16 30 H 0.04 0.76 8.06 -51.93 -0.42 0.34 16 31 H 0.04 0.77 6.45 -51.93 -0.34 0.44 16 32 H 0.08 1.66 6.76 -51.93 -0.35 1.31 16 33 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.03 0.92 7.93 -51.93 -0.41 0.51 16 35 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.18 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -33.39 333.04 -8.96 -42.35 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -4.82 Total: -4.04 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -1.18 Total: -9.35 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.51 Total: -47.64 kcal Atomic # 8 Polarization: -2.23 SS G_CDS: 0.05 Total: -2.18 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.49 Total: -1.19 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.39 -8.96 -42.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.789 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds