Wall clock time and date at job start Tue Mar 31 2020 06:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34820 * 125.64089 * 2 1 4 4 C 1.40786 * 107.07360 * 179.78471 * 3 2 1 5 5 C 1.36254 * 106.72558 * 0.35415 * 4 3 2 6 6 C 1.47101 * 125.96424 * 179.91406 * 5 4 3 7 7 N 1.30492 * 125.48573 * 179.97438 * 6 5 4 8 8 C 1.31330 * 116.96319 * 180.22150 * 7 6 5 9 9 C 1.50706 * 122.05902 * 179.75126 * 8 7 6 10 10 N 1.46902 * 109.46577 * 274.71042 * 9 8 7 11 11 C 1.46891 * 111.00304 * 293.95012 * 10 9 8 12 12 C 1.46901 * 110.99644 * 169.99988 * 10 9 8 13 13 C 1.50700 * 109.47327 * 190.00050 * 12 10 9 14 14 H 1.08006 * 120.00051 * 0.02562 * 13 12 10 15 15 C 1.37876 * 120.00184 * 179.97438 * 13 12 10 16 16 N 1.31509 * 120.00072 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99646 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47154 * 90.00546 * 17 15 13 19 19 H 1.48498 * 109.46844 * 209.99801 * 17 15 13 20 20 H 1.48486 * 109.47387 * 330.00107 * 17 15 13 21 21 C 1.33681 * 115.88201 * 359.47479 * 8 7 6 22 22 S 1.76181 * 125.48220 * 359.68272 * 6 5 4 23 23 O 1.34281 * 125.63943 * 180.02562 * 2 1 3 24 24 H 1.09008 * 109.47329 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47063 * 299.96934 * 1 2 3 26 26 H 1.09001 * 109.47395 * 59.96925 * 1 2 3 27 27 H 1.07996 * 126.46386 * 0.02854 * 3 2 1 28 28 H 1.08004 * 126.63828 * 180.25590 * 4 3 2 29 29 H 1.09000 * 109.47318 * 34.70549 * 9 8 7 30 30 H 1.09000 * 109.47161 * 154.71180 * 9 8 7 31 31 H 1.09003 * 109.47237 * 60.00538 * 11 10 9 32 32 H 1.08998 * 109.47394 * 179.97438 * 11 10 9 33 33 H 1.09003 * 109.47554 * 300.00530 * 11 10 9 34 34 H 1.09000 * 109.47307 * 309.99860 * 12 10 9 35 35 H 1.08997 * 109.47179 * 70.00271 * 12 10 9 36 36 H 0.97000 * 119.99883 * 180.02562 * 16 15 13 37 37 H 1.08004 * 125.87254 * 180.26932 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0957 0.0000 4 6 3.6271 0.6474 0.0051 5 6 3.5834 -0.7145 -0.0002 6 6 4.7456 -1.6162 0.0006 7 7 4.6928 -2.9200 -0.0040 8 6 5.8383 -3.5624 0.0021 9 6 5.9112 -5.0677 0.0033 10 7 5.8145 -5.5613 1.3835 11 6 6.9852 -5.1541 2.1717 12 6 5.6436 -7.0201 1.4100 13 6 5.3039 -7.4609 2.8105 14 1 5.2226 -6.7303 3.6018 15 6 5.0959 -8.7966 3.0815 16 7 5.1944 -9.6862 2.1180 17 14 4.6755 -9.3428 4.8178 18 1 3.2014 -9.3325 4.9967 19 1 5.1917 -10.7169 5.0430 20 1 5.2991 -8.4136 5.7937 21 6 6.9355 -2.7988 0.0013 22 16 6.4330 -1.1095 0.0005 23 8 2.2894 -1.0913 -0.0005 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5134 0.8903 26 1 -0.3634 0.5143 -0.8897 27 1 1.9607 2.1234 0.0004 28 1 4.5141 1.2637 0.0103 29 1 5.0879 -5.4719 -0.5856 30 1 6.8591 -5.3858 -0.4307 31 1 7.0481 -4.0661 2.1934 32 1 6.8877 -5.5323 3.1893 33 1 7.8886 -5.5612 1.7174 34 1 4.8369 -7.3038 0.7342 35 1 6.5693 -7.5002 1.0926 36 1 5.0477 -10.6259 2.3087 37 1 7.9549 -3.1556 0.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083217296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:47 Heat of formation + Delta-G solvation = 44.661268 kcal Electronic energy + Delta-G solvation = -19987.260352 eV Core-core repulsion = 16857.534915 eV Total energy + Delta-G solvation = -3129.725437 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.60131 -40.90190 -38.03863 -34.79972 -34.27774 -33.60221 -31.73237 -29.33908 -28.66380 -28.22790 -26.01420 -24.55267 -22.95340 -22.49480 -21.44424 -20.33606 -19.11784 -18.47602 -17.80439 -17.40060 -16.91720 -16.27116 -16.15330 -15.76107 -15.47699 -14.97188 -14.67870 -14.33812 -13.94493 -13.91389 -13.88018 -13.75241 -13.69873 -13.45825 -12.98772 -12.85666 -12.76379 -12.62832 -12.41900 -12.25952 -11.84794 -11.36656 -11.15067 -10.81302 -10.66370 -10.62765 -10.15417 -9.08516 -8.90099 -8.22596 -6.32971 -0.79468 -0.00210 0.52881 0.71945 1.38815 1.41267 1.45933 1.52230 1.94523 2.01552 2.39225 2.86258 3.09588 3.42640 3.68218 3.91993 3.95534 4.13237 4.22666 4.39505 4.49706 4.55922 4.58388 4.69631 4.72835 4.74097 4.74718 4.87042 5.01486 5.03986 5.12960 5.15042 5.24953 5.54021 5.61072 6.00471 6.05827 6.27977 6.53953 6.74061 6.81831 7.36342 8.88520 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017003 B = 0.003607 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.375198 B = 7761.076098 C = 8889.347266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.004 4.004 3 C -0.212 4.212 4 C -0.150 4.150 5 C 0.008 3.992 6 C 0.101 3.899 7 N -0.483 5.483 8 C 0.071 3.929 9 C 0.126 3.874 10 N -0.549 5.549 11 C 0.042 3.958 12 C 0.211 3.789 13 C -0.526 4.526 14 H 0.059 0.941 15 C 0.003 3.997 16 N -0.933 5.933 17 Si 0.971 3.029 18 H -0.275 1.275 19 H -0.278 1.278 20 H -0.264 1.264 21 C -0.240 4.240 22 S 0.202 5.798 23 O -0.187 6.187 24 H 0.069 0.931 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.191 0.809 28 H 0.181 0.819 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.025 0.975 34 H 0.000 1.000 35 H -0.027 1.027 36 H 0.266 0.734 37 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.183 25.700 -5.856 26.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.056 4.056 3 C -0.230 4.230 4 C -0.173 4.173 5 C -0.045 4.045 6 C -0.172 4.172 7 N -0.198 5.198 8 C -0.062 4.062 9 C -0.005 4.005 10 N -0.274 5.274 11 C -0.106 4.106 12 C 0.085 3.915 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.195 4.195 16 N -0.573 5.573 17 Si 0.795 3.205 18 H -0.201 1.201 19 H -0.203 1.203 20 H -0.188 1.188 21 C -0.380 4.380 22 S 0.457 5.543 23 O -0.084 6.084 24 H 0.088 0.912 25 H 0.128 0.872 26 H 0.131 0.869 27 H 0.208 0.792 28 H 0.198 0.802 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.018 0.982 35 H -0.009 1.009 36 H 0.074 0.926 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.619 26.093 -5.689 26.755 hybrid contribution 0.509 -2.281 0.260 2.351 sum -1.110 23.812 -5.429 24.448 Atomic orbital electron populations 1.20609 0.82230 1.04661 1.05882 1.23664 0.95903 0.83630 1.02426 1.21874 0.91091 1.00896 1.09167 1.22177 1.00523 0.90970 1.03633 1.19229 0.80490 0.91885 1.12922 1.24652 0.95877 0.90886 1.05793 1.66521 1.31101 1.06570 1.15616 1.19903 0.86627 0.97458 1.02228 1.20558 1.01025 0.87818 0.91066 1.61911 1.40740 1.14215 1.10533 1.22210 0.90094 0.99840 0.98422 1.19378 0.93624 0.81885 0.96651 1.21428 1.47383 0.92541 0.95035 0.92278 1.25909 0.95146 0.96555 1.01921 1.70078 1.50764 1.02206 1.34300 0.85365 0.78511 0.77581 0.79055 1.20088 1.20296 1.18842 1.27267 1.04663 0.95360 1.10672 1.84119 0.96707 1.05227 1.68226 1.84162 1.16172 1.36682 1.71345 0.91179 0.87158 0.86893 0.79192 0.80203 0.91713 0.92047 0.91287 0.92505 0.95693 0.98167 1.00925 0.92559 0.77533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.41 71.23 0.74 -0.23 16 2 C 0.00 -0.08 7.31 24.90 0.18 0.10 16 3 C -0.21 -3.63 10.78 22.11 0.24 -3.39 16 4 C -0.15 -3.06 10.64 22.43 0.24 -2.82 16 5 C 0.01 0.22 7.24 24.14 0.17 0.39 16 6 C 0.10 3.17 7.50 87.22 0.65 3.83 16 7 N -0.48 -18.69 10.57 -178.35 -1.89 -20.57 16 8 C 0.07 2.50 5.53 41.60 0.23 2.73 16 9 C 0.13 5.05 5.38 85.56 0.46 5.51 16 10 N -0.55 -25.95 4.74 -931.66 -4.42 -30.37 16 11 C 0.04 1.71 9.06 127.69 1.16 2.87 16 12 C 0.21 11.84 4.72 85.56 0.40 12.25 16 13 C -0.53 -31.24 8.46 25.60 0.22 -31.02 16 14 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 15 C 0.00 0.16 5.46 84.66 0.46 0.63 16 16 N -0.93 -57.55 13.29 21.45 0.28 -57.27 16 17 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 21 C -0.24 -6.27 9.79 66.78 0.65 -5.61 16 22 S 0.20 4.39 23.19 -56.49 -1.31 3.08 16 23 O -0.19 -5.86 10.68 -6.94 -0.07 -5.93 16 24 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.19 1.75 8.06 -2.91 -0.02 1.72 16 28 H 0.18 2.49 8.06 -2.91 -0.02 2.46 16 29 H 0.06 2.82 7.93 -2.39 -0.02 2.80 16 30 H 0.06 2.18 8.06 -2.39 -0.02 2.16 16 31 H 0.07 2.40 6.45 -2.39 -0.02 2.38 16 32 H 0.06 2.49 6.76 -2.39 -0.02 2.47 16 33 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.00 0.01 7.93 -2.39 -0.02 -0.01 16 35 H -0.03 -1.58 8.12 -2.39 -0.02 -1.60 16 36 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.21 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -76.59 333.04 1.51 -75.08 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 1.07 Total: 3.04 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 5.81 Total: -14.78 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -6.02 Total: -108.21 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.07 Total: -5.93 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -1.31 Total: 3.08 kcal Total: -76.59 1.51 -75.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.740 kcal (2) G-P(sol) polarization free energy of solvation -76.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds