Wall clock time and date at job start Tue Mar 31 2020 06:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34900 * 126.33579 * 2 1 4 4 C 1.34535 * 107.67793 * 180.29976 * 3 2 1 5 5 C 1.47019 * 125.76060 * 179.76283 * 4 3 2 6 6 C 1.36180 * 125.33395 * 359.97334 * 5 4 3 7 7 C 1.37718 * 114.44445 * 179.97438 * 6 5 4 8 8 C 1.33714 * 115.19538 * 0.02562 * 7 6 5 9 9 S 1.75828 * 109.95778 * 359.76847 * 8 7 6 10 10 N 1.31516 * 108.47827 * 359.73528 * 4 3 2 11 11 C 1.34211 * 108.61742 * 0.02562 * 10 4 3 12 12 C 1.50706 * 126.05288 * 179.97438 * 11 10 4 13 13 N 1.46893 * 109.47176 * 90.02483 * 12 11 10 14 14 C 1.46901 * 110.99883 * 293.94754 * 13 12 11 15 15 C 1.46899 * 111.00143 * 169.99759 * 13 12 11 16 16 C 1.50703 * 109.47387 * 189.99525 * 15 13 12 17 17 H 1.07997 * 119.99501 * 0.02562 * 16 15 13 18 18 C 1.37878 * 120.00008 * 179.97438 * 16 15 13 19 19 N 1.31512 * 119.99829 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00111 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46672 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47037 * 120.00273 * 20 18 16 23 23 H 1.48498 * 109.47193 * 240.00768 * 20 18 16 24 24 H 1.08997 * 109.47316 * 270.14402 * 1 2 3 25 25 H 1.09002 * 109.46988 * 30.14262 * 1 2 3 26 26 H 1.09005 * 109.47222 * 150.13546 * 1 2 3 27 27 H 1.08001 * 122.77685 * 359.97438 * 6 5 4 28 28 H 1.08000 * 122.40397 * 180.02562 * 7 6 5 29 29 H 1.08001 * 125.02441 * 179.97438 * 8 7 6 30 30 H 1.09001 * 109.46953 * 210.01943 * 12 11 10 31 31 H 1.09000 * 109.47318 * 330.01541 * 12 11 10 32 32 H 1.09007 * 109.47214 * 60.00587 * 14 13 12 33 33 H 1.09002 * 109.47259 * 180.02562 * 14 13 12 34 34 H 1.08999 * 109.47697 * 300.00606 * 14 13 12 35 35 H 1.08998 * 109.47358 * 310.00253 * 15 13 12 36 36 H 1.09003 * 109.47119 * 69.99597 * 15 13 12 37 37 H 0.97009 * 120.00010 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3064 1.0867 0.0000 4 6 3.5810 0.6563 -0.0067 5 6 4.7767 1.5118 -0.0140 6 6 4.7707 2.8736 -0.0156 7 6 6.0220 3.4489 -0.0224 8 6 7.0446 2.5874 -0.0268 9 16 6.4388 0.9368 -0.0158 10 7 3.5769 -0.6588 -0.0050 11 6 2.3037 -1.0833 0.0022 12 6 1.8476 -2.5197 0.0059 13 7 1.7064 -2.9851 1.3920 14 6 3.0101 -3.0307 2.0674 15 6 1.0412 -4.2938 1.4428 16 6 0.6936 -4.6257 2.8711 17 1 0.9416 -3.9333 3.6620 18 6 0.0579 -5.8126 3.1680 19 7 -0.2445 -6.6554 2.2048 20 14 -0.3736 -6.2236 4.9384 21 1 0.0712 -5.1189 5.8255 22 1 -1.8431 -6.3975 5.0621 23 1 0.3089 -7.4815 5.3351 24 1 -0.3634 0.0026 1.0276 25 1 -0.3633 0.8887 -0.5161 26 1 -0.3634 -0.8912 -0.5117 27 1 3.8602 3.4543 -0.0119 28 1 6.1669 4.5191 -0.0239 29 1 8.0884 2.8644 -0.0326 30 1 0.8868 -2.5972 -0.5030 31 1 2.5833 -3.1359 -0.5111 32 1 3.4496 -2.0332 2.0768 33 1 2.8767 -3.3789 3.0917 34 1 3.6715 -3.7141 1.5350 35 1 0.1302 -4.2618 0.8451 36 1 1.7100 -5.0570 1.0449 37 1 -0.6914 -7.4907 2.4137 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083223216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:28 Heat of formation + Delta-G solvation = 62.255937 kcal Electronic energy + Delta-G solvation = -20286.042977 eV Core-core repulsion = 17157.080502 eV Total energy + Delta-G solvation = -3128.962475 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.11495 -37.90757 -36.79745 -34.47139 -33.00059 -32.25850 -30.16507 -28.18884 -26.90476 -26.02212 -24.31931 -23.59624 -21.87809 -21.18850 -20.26555 -18.92569 -18.07475 -16.70065 -16.46546 -16.06053 -15.49915 -14.86783 -14.47733 -14.05209 -13.99516 -13.66500 -13.42858 -13.23825 -12.96604 -12.81476 -12.53540 -12.36697 -12.00637 -11.78107 -11.44051 -11.25712 -11.02864 -10.91353 -10.84009 -10.64355 -10.48581 -10.28587 -9.90447 -9.55070 -9.20899 -8.75025 -8.43917 -7.97409 -7.25114 -6.02691 -4.03610 0.25912 1.13110 1.72098 1.73135 2.40134 2.82124 3.01925 3.31414 3.38826 3.44212 3.89059 4.43884 4.76434 4.92392 4.96787 5.11077 5.17762 5.24527 5.32551 5.36468 5.56969 5.64275 5.69129 5.92233 5.99839 6.02924 6.10535 6.17283 6.22496 6.33437 6.44554 6.49499 6.86025 7.25716 7.34996 7.79687 7.82582 8.06376 8.20087 8.53649 9.04298 9.60530 11.08240 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025625 B = 0.003319 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.404053 B = 8435.250027 C = 8936.323131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.024 4.024 3 O -0.195 6.195 4 C 0.234 3.766 5 C -0.119 4.119 6 C -0.109 4.109 7 C -0.136 4.136 8 C -0.224 4.224 9 S 0.209 5.791 10 N -0.454 5.454 11 C 0.015 3.985 12 C 0.132 3.868 13 N -0.535 5.535 14 C 0.042 3.958 15 C 0.193 3.807 16 C -0.505 4.505 17 H 0.064 0.936 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.285 1.285 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.170 0.830 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.012 0.988 35 H 0.031 0.969 36 H -0.007 1.007 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.059 19.378 -6.980 22.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.078 4.078 3 O -0.083 6.083 4 C 0.031 3.969 5 C -0.238 4.238 6 C -0.143 4.143 7 C -0.166 4.166 8 C -0.361 4.361 9 S 0.475 5.525 10 N -0.184 5.184 11 C -0.107 4.107 12 C 0.003 3.997 13 N -0.260 5.260 14 C -0.106 4.106 15 C 0.068 3.932 16 C -0.543 4.543 17 H 0.082 0.918 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.725 3.275 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.110 0.890 25 H 0.091 0.909 26 H 0.114 0.886 27 H 0.164 0.836 28 H 0.163 0.837 29 H 0.187 0.813 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.031 0.969 35 H 0.049 0.951 36 H 0.011 0.989 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.909 17.745 -6.754 21.898 hybrid contribution -0.994 0.935 0.528 1.463 sum 9.915 18.680 -6.226 22.046 Atomic orbital electron populations 1.20304 0.83339 1.03813 1.04483 1.23373 0.94888 0.83427 1.06128 1.84441 1.16833 1.36343 1.70640 1.22079 0.82044 0.88283 1.04524 1.21451 0.93428 0.94646 1.14276 1.20631 0.99556 0.92014 1.02073 1.19943 0.91057 1.01274 1.04302 1.26059 1.03696 0.96655 1.09715 1.84563 0.93790 1.05073 1.69114 1.70707 1.23333 1.07532 1.16824 1.21537 0.87124 0.97671 1.04416 1.20352 0.99767 0.86657 0.92908 1.62149 1.20726 1.31938 1.11196 1.22175 0.89542 0.98990 0.99940 1.19760 0.93276 0.82199 0.97982 1.21181 1.37484 1.03003 0.92670 0.91817 1.24980 0.95956 0.96230 0.97448 1.69969 1.41941 1.10235 1.31707 0.86448 0.78029 0.78217 0.84782 1.19675 1.21003 1.21121 0.89037 0.90945 0.88575 0.83599 0.83739 0.81270 0.89600 0.93994 0.93509 0.90974 0.96896 0.95091 0.98933 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.21 36.01 0.37 -0.40 16 2 C -0.02 -0.38 7.38 -35.64 -0.26 -0.65 16 3 O -0.20 -3.10 10.79 3.41 0.04 -3.07 16 4 C 0.23 3.80 8.08 -14.13 -0.11 3.68 16 5 C -0.12 -1.57 6.46 -36.76 -0.24 -1.81 16 6 C -0.11 -1.15 10.15 -40.51 -0.41 -1.56 16 7 C -0.14 -1.13 10.15 -41.36 -0.42 -1.55 16 8 C -0.22 -1.83 11.21 29.15 0.33 -1.50 16 9 S 0.21 2.31 23.30 -107.50 -2.50 -0.20 16 10 N -0.45 -8.21 10.63 -8.13 -0.09 -8.30 16 11 C 0.01 0.27 5.70 -82.88 -0.47 -0.21 16 12 C 0.13 2.52 5.29 -4.98 -0.03 2.50 16 13 N -0.54 -11.98 4.74 -245.82 -1.17 -13.15 16 14 C 0.04 0.91 9.18 60.07 0.55 1.46 16 15 C 0.19 5.02 4.72 -4.98 -0.02 5.00 16 16 C -0.50 -14.22 8.46 -34.44 -0.29 -14.51 16 17 H 0.06 1.80 7.12 -52.49 -0.37 1.42 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 20 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.10 1.12 7.14 -51.93 -0.37 0.75 16 27 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 29 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.09 1.50 6.93 -51.93 -0.36 1.14 16 31 H 0.04 0.82 8.12 -51.93 -0.42 0.40 16 32 H 0.05 0.97 6.73 -51.92 -0.35 0.62 16 33 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16 34 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.03 0.84 7.93 -51.93 -0.41 0.42 16 36 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 331.84 15.07 5.00 5.00 Total: -1.00 -32.04 331.84 -8.85 -40.89 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: -4.73 Total: -3.89 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -1.11 Total: -8.09 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.52 Total: -47.31 kcal Atomic # 8 Polarization: -3.10 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.50 Total: -0.20 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.04 -8.85 -40.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083223216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.146 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds