Wall clock time and date at job start Tue Mar 31 2020 06:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34900 * 126.33579 * 2 1 4 4 C 1.34535 * 107.67793 * 180.29976 * 3 2 1 5 5 C 1.47019 * 125.76060 * 179.76283 * 4 3 2 6 6 C 1.36180 * 125.33395 * 359.97334 * 5 4 3 7 7 C 1.37718 * 114.44445 * 179.97438 * 6 5 4 8 8 C 1.33714 * 115.19538 * 0.02562 * 7 6 5 9 9 S 1.75828 * 109.95778 * 359.76847 * 8 7 6 10 10 N 1.31516 * 108.47827 * 359.73528 * 4 3 2 11 11 C 1.34211 * 108.61742 * 0.02562 * 10 4 3 12 12 C 1.50706 * 126.05288 * 179.97438 * 11 10 4 13 13 N 1.46893 * 109.47176 * 90.02483 * 12 11 10 14 14 C 1.46901 * 110.99883 * 293.94754 * 13 12 11 15 15 C 1.46899 * 111.00143 * 169.99759 * 13 12 11 16 16 C 1.50703 * 109.47387 * 189.99525 * 15 13 12 17 17 H 1.07997 * 119.99501 * 0.02562 * 16 15 13 18 18 C 1.37878 * 120.00008 * 179.97438 * 16 15 13 19 19 N 1.31512 * 119.99829 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00111 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46672 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47037 * 120.00273 * 20 18 16 23 23 H 1.48498 * 109.47193 * 240.00768 * 20 18 16 24 24 H 1.08997 * 109.47316 * 270.14402 * 1 2 3 25 25 H 1.09002 * 109.46988 * 30.14262 * 1 2 3 26 26 H 1.09005 * 109.47222 * 150.13546 * 1 2 3 27 27 H 1.08001 * 122.77685 * 359.97438 * 6 5 4 28 28 H 1.08000 * 122.40397 * 180.02562 * 7 6 5 29 29 H 1.08001 * 125.02441 * 179.97438 * 8 7 6 30 30 H 1.09001 * 109.46953 * 210.01943 * 12 11 10 31 31 H 1.09000 * 109.47318 * 330.01541 * 12 11 10 32 32 H 1.09007 * 109.47214 * 60.00587 * 14 13 12 33 33 H 1.09002 * 109.47259 * 180.02562 * 14 13 12 34 34 H 1.08999 * 109.47697 * 300.00606 * 14 13 12 35 35 H 1.08998 * 109.47358 * 310.00253 * 15 13 12 36 36 H 1.09003 * 109.47119 * 69.99597 * 15 13 12 37 37 H 0.97009 * 120.00010 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3064 1.0867 0.0000 4 6 3.5810 0.6563 -0.0067 5 6 4.7767 1.5118 -0.0140 6 6 4.7707 2.8736 -0.0156 7 6 6.0220 3.4489 -0.0224 8 6 7.0446 2.5874 -0.0268 9 16 6.4388 0.9368 -0.0158 10 7 3.5769 -0.6588 -0.0050 11 6 2.3037 -1.0833 0.0022 12 6 1.8476 -2.5197 0.0059 13 7 1.7064 -2.9851 1.3920 14 6 3.0101 -3.0307 2.0674 15 6 1.0412 -4.2938 1.4428 16 6 0.6936 -4.6257 2.8711 17 1 0.9416 -3.9333 3.6620 18 6 0.0579 -5.8126 3.1680 19 7 -0.2445 -6.6554 2.2048 20 14 -0.3736 -6.2236 4.9384 21 1 0.0712 -5.1189 5.8255 22 1 -1.8431 -6.3975 5.0621 23 1 0.3089 -7.4815 5.3351 24 1 -0.3634 0.0026 1.0276 25 1 -0.3633 0.8887 -0.5161 26 1 -0.3634 -0.8912 -0.5117 27 1 3.8602 3.4543 -0.0119 28 1 6.1669 4.5191 -0.0239 29 1 8.0884 2.8644 -0.0326 30 1 0.8868 -2.5972 -0.5030 31 1 2.5833 -3.1359 -0.5111 32 1 3.4496 -2.0332 2.0768 33 1 2.8767 -3.3789 3.0917 34 1 3.6715 -3.7141 1.5350 35 1 0.1302 -4.2618 0.8451 36 1 1.7100 -5.0570 1.0449 37 1 -0.6914 -7.4907 2.4137 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083223216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:27 Heat of formation + Delta-G solvation = 40.072450 kcal Electronic energy + Delta-G solvation = -20287.004925 eV Core-core repulsion = 17157.080502 eV Total energy + Delta-G solvation = -3129.924423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.34586 -38.73874 -38.47165 -35.88266 -34.68556 -33.82927 -31.04270 -29.88582 -28.74214 -27.23678 -25.83531 -24.84020 -23.15853 -22.67719 -21.71150 -19.91690 -19.00356 -18.50467 -17.95675 -17.27091 -16.79487 -16.45649 -16.01451 -15.79673 -15.45079 -14.92481 -14.61021 -14.29674 -14.01903 -13.78475 -13.70339 -13.60601 -13.41219 -13.23567 -13.12063 -12.93093 -12.69180 -12.58165 -12.37458 -12.21104 -11.94068 -11.79794 -11.60240 -11.31297 -10.62869 -10.52255 -9.56495 -9.16733 -9.02692 -8.20337 -6.29930 -0.62976 0.27803 0.62332 0.99032 1.41466 1.41660 1.43854 1.55952 1.70724 1.93298 2.41207 2.76583 3.12409 3.41402 3.68647 3.78498 4.13549 4.18517 4.27213 4.41504 4.51227 4.55439 4.58347 4.59241 4.71120 4.72903 4.91571 5.00311 5.02300 5.08941 5.16074 5.20522 5.24617 5.28594 5.40685 5.64115 6.00738 6.22411 6.52785 6.59522 6.84752 7.39341 8.90932 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025625 B = 0.003319 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.404053 B = 8435.250027 C = 8936.323131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.020 4.020 3 O -0.196 6.196 4 C 0.242 3.758 5 C -0.170 4.170 6 C -0.086 4.086 7 C -0.142 4.142 8 C -0.191 4.191 9 S 0.171 5.829 10 N -0.488 5.488 11 C -0.016 4.016 12 C 0.139 3.861 13 N -0.537 5.537 14 C 0.054 3.946 15 C 0.208 3.792 16 C -0.522 4.522 17 H 0.060 0.940 18 C 0.004 3.996 19 N -0.932 5.932 20 Si 0.969 3.031 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.280 1.280 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.158 0.842 28 H 0.181 0.819 29 H 0.206 0.794 30 H 0.099 0.901 31 H 0.031 0.969 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.007 0.993 35 H 0.018 0.982 36 H -0.037 1.037 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.621 22.012 -6.362 25.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.074 4.074 3 O -0.084 6.084 4 C 0.038 3.962 5 C -0.288 4.288 6 C -0.121 4.121 7 C -0.171 4.171 8 C -0.328 4.328 9 S 0.436 5.564 10 N -0.218 5.218 11 C -0.136 4.136 12 C 0.010 3.990 13 N -0.261 5.261 14 C -0.095 4.095 15 C 0.082 3.918 16 C -0.561 4.561 17 H 0.078 0.922 18 C -0.194 4.194 19 N -0.573 5.573 20 Si 0.793 3.207 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.205 1.205 24 H 0.109 0.891 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.175 0.825 28 H 0.199 0.801 29 H 0.223 0.777 30 H 0.117 0.883 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.026 0.974 35 H 0.036 0.964 36 H -0.019 1.019 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.472 20.379 -6.145 24.180 hybrid contribution -1.028 0.291 0.266 1.101 sum 10.444 20.669 -5.878 23.893 Atomic orbital electron populations 1.20460 0.80940 1.05501 1.04903 1.23868 0.96114 0.82835 1.04573 1.84456 1.16908 1.36200 1.70797 1.22661 0.82828 0.88168 1.02546 1.21589 0.92946 0.95498 1.18745 1.21012 1.01211 0.91043 0.98862 1.20299 0.89814 1.03059 1.03928 1.26517 1.05408 0.94299 1.06582 1.84686 0.93589 1.08142 1.69945 1.70643 1.23519 1.08835 1.18807 1.21321 0.87921 0.97261 1.07146 1.20271 1.00271 0.87607 0.90832 1.62068 1.20984 1.29559 1.13519 1.22035 0.89186 0.99258 0.98986 1.19435 0.92294 0.83172 0.96857 1.21433 1.37869 1.03386 0.93381 0.92187 1.25861 0.95594 0.95937 1.01979 1.70082 1.42453 1.10726 1.33998 0.85344 0.78027 0.78043 0.79257 1.19024 1.20071 1.20539 0.89057 0.87997 0.88161 0.82467 0.80139 0.77748 0.88277 0.95107 0.92570 0.92191 0.97429 0.96411 1.01929 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.45 10.21 71.24 0.73 -0.72 16 2 C -0.02 -0.62 7.38 24.83 0.18 -0.44 16 3 O -0.20 -6.13 10.79 -10.71 -0.12 -6.25 16 4 C 0.24 7.88 8.08 87.04 0.70 8.59 16 5 C -0.17 -4.36 6.46 24.09 0.16 -4.20 16 6 C -0.09 -1.61 10.15 21.67 0.22 -1.39 16 7 C -0.14 -1.82 10.15 21.12 0.21 -1.61 16 8 C -0.19 -2.45 11.21 66.79 0.75 -1.71 16 9 S 0.17 3.65 23.30 -56.49 -1.32 2.33 16 10 N -0.49 -18.16 10.63 -293.49 -3.12 -21.28 16 11 C -0.02 -0.57 5.70 41.33 0.24 -0.34 16 12 C 0.14 5.49 5.29 85.56 0.45 5.94 16 13 N -0.54 -24.80 4.74 -931.64 -4.42 -29.22 16 14 C 0.05 2.42 9.18 127.69 1.17 3.59 16 15 C 0.21 11.26 4.72 85.56 0.40 11.66 16 16 C -0.52 -29.97 8.46 25.60 0.22 -29.75 16 17 H 0.06 3.42 7.12 -2.91 -0.02 3.40 16 18 C 0.00 0.26 5.46 84.66 0.46 0.72 16 19 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 20 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.10 2.26 7.14 -2.38 -0.02 2.24 16 27 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 28 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 29 H 0.21 1.15 8.06 -2.91 -0.02 1.13 16 30 H 0.10 3.57 6.93 -2.39 -0.02 3.55 16 31 H 0.03 1.27 8.12 -2.39 -0.02 1.25 16 32 H 0.06 2.40 6.73 -2.38 -0.02 2.38 16 33 H 0.06 2.79 6.76 -2.39 -0.02 2.77 16 34 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.02 1.00 7.93 -2.39 -0.02 0.98 16 36 H -0.04 -2.19 8.12 -2.39 -0.02 -2.21 16 37 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 Total: -1.00 -70.61 331.84 0.31 -70.30 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 1.08 Total: 2.84 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 5.90 Total: -9.65 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -7.25 Total: -106.15 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.12 Total: -6.25 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.32 Total: 2.33 kcal Total: -70.61 0.31 -70.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083223216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.369 kcal (2) G-P(sol) polarization free energy of solvation -70.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds