Wall clock time and date at job start Tue Mar 31 2020 06:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33629 * 122.75325 * 2 1 4 4 S 1.76199 * 107.92712 * 180.02562 * 3 2 1 5 5 C 1.70975 * 90.28213 * 359.97438 * 4 3 2 6 6 C 1.50695 * 124.91838 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.47471 * 264.72583 * 6 5 4 8 8 C 1.46902 * 111.00036 * 199.38314 * 7 6 5 9 9 C 1.50697 * 109.46964 * 169.99897 * 8 7 6 10 10 H 1.07997 * 120.00264 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00007 * 179.97438 * 9 8 7 12 12 N 1.31519 * 120.00168 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00268 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46969 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47283 * 119.99888 * 13 11 9 16 16 H 1.48497 * 109.47179 * 240.00132 * 13 11 9 17 17 C 1.46904 * 110.99990 * 75.42834 * 7 6 5 18 18 C 1.50703 * 109.46893 * 61.79726 * 17 7 6 19 19 C 1.34519 * 125.78770 * 93.31348 * 18 17 7 20 20 C 1.41374 * 106.83860 * 180.02562 * 19 18 17 21 21 C 1.34513 * 106.84387 * 359.97438 * 20 19 18 22 22 O 1.34301 * 108.42167 * 0.02562 * 21 20 19 23 23 N 1.29020 * 110.16751 * 0.24415 * 5 4 3 24 24 H 1.09004 * 109.47293 * 89.97407 * 1 2 3 25 25 H 1.08996 * 109.47713 * 209.97470 * 1 2 3 26 26 H 1.09001 * 109.47321 * 329.97455 * 1 2 3 27 27 H 1.08006 * 126.03997 * 0.03777 * 3 2 1 28 28 H 1.08999 * 109.47713 * 144.72122 * 6 5 4 29 29 H 1.09000 * 109.46972 * 24.72524 * 6 5 4 30 30 H 1.09004 * 109.47162 * 289.99841 * 8 7 6 31 31 H 1.08993 * 109.47317 * 49.99727 * 8 7 6 32 32 H 0.96990 * 120.00362 * 179.97438 * 12 11 9 33 33 H 1.09000 * 109.46806 * 301.79788 * 17 7 6 34 34 H 1.08993 * 109.46899 * 181.80027 * 17 7 6 35 35 H 1.07996 * 126.57810 * 0.05708 * 19 18 17 36 36 H 1.08007 * 126.58066 * 180.02562 * 20 19 18 37 37 H 1.08005 * 125.79032 * 180.26435 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2299 1.1238 0.0000 4 16 3.9332 0.6730 -0.0007 5 6 3.5039 -0.9820 -0.0002 6 6 4.4833 -2.1273 -0.0010 7 7 4.7036 -2.5823 -1.3803 8 6 5.2614 -3.9411 -1.4036 9 6 5.2447 -4.4668 -2.8159 10 1 4.8587 -3.8527 -3.6161 11 6 5.7231 -5.7312 -3.0865 12 7 6.1945 -6.4785 -2.1123 13 14 5.7031 -6.3826 -4.8371 14 1 5.1275 -5.3546 -5.7412 15 1 7.0901 -6.6973 -5.2641 16 1 4.8751 -7.6138 -4.8977 17 6 5.5673 -1.6460 -2.1120 18 6 6.9159 -1.5790 -1.4427 19 6 7.9919 -2.3191 -1.7654 20 6 9.0318 -1.9341 -0.8885 21 6 8.5294 -0.9813 -0.0827 22 8 7.2474 -0.7705 -0.4228 23 7 2.2199 -1.1084 -0.0047 24 1 -0.3634 0.0005 -1.0277 25 1 -0.3634 -0.8901 0.5134 26 1 -0.3634 0.8897 0.5142 27 1 1.8392 2.1308 0.0006 28 1 4.0825 -2.9486 0.5929 29 1 5.4292 -1.7966 0.4279 30 1 6.2874 -3.9190 -1.0363 31 1 4.6614 -4.5911 -0.7669 32 1 6.5307 -7.3681 -2.3026 33 1 5.1119 -0.6557 -2.1117 34 1 5.6881 -1.9900 -3.1391 35 1 8.0502 -3.0641 -2.5452 36 1 10.0371 -2.3285 -0.8697 37 1 9.0670 -0.4697 0.7019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088603206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:22 Heat of formation + Delta-G solvation = 67.929123 kcal Electronic energy + Delta-G solvation = -21094.008627 eV Core-core repulsion = 17965.292160 eV Total energy + Delta-G solvation = -3128.716467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.09950 -39.61590 -36.99656 -32.88330 -32.47037 -31.91718 -29.79986 -28.31196 -27.36042 -26.36159 -24.62265 -22.26034 -21.16865 -21.04910 -19.72416 -19.23485 -17.51180 -16.84641 -16.18649 -15.93441 -15.36274 -14.99625 -14.55826 -14.13432 -14.00537 -13.91955 -13.29494 -13.17375 -12.52402 -12.39798 -12.31145 -12.20191 -12.09300 -11.95496 -11.39738 -11.28712 -11.14053 -10.94179 -10.70388 -10.58392 -10.01279 -9.46003 -9.33034 -9.22403 -9.11220 -8.55022 -8.45148 -7.96260 -7.54688 -6.05522 -4.07097 0.93270 1.61279 1.99661 2.20639 3.01926 3.18089 3.29365 3.37705 3.41808 3.48534 4.29182 4.41496 4.91718 5.14326 5.21303 5.28085 5.32018 5.37427 5.48438 5.55821 5.62775 5.66864 5.76438 5.89046 6.02312 6.06757 6.32025 6.34409 6.42590 6.55914 6.62077 7.05301 7.09055 7.28101 7.62733 7.72542 7.90396 8.05841 8.07089 8.40848 8.98981 9.56659 11.05058 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.005844 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.474907 B = 4789.968875 C = 6352.549964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.069 3.931 3 C -0.282 4.282 4 S 0.109 5.891 5 C 0.089 3.911 6 C 0.118 3.882 7 N -0.510 5.510 8 C 0.187 3.813 9 C -0.506 4.506 10 H 0.064 0.936 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.894 3.106 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.136 3.864 18 C -0.041 4.041 19 C -0.180 4.180 20 C -0.212 4.212 21 C -0.063 4.063 22 O -0.182 6.182 23 N -0.462 5.462 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.170 0.830 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.011 0.989 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.153 0.847 36 H 0.141 0.859 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.748 14.860 5.160 15.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.064 4.064 3 C -0.421 4.421 4 S 0.364 5.636 5 C -0.190 4.190 6 C -0.013 4.013 7 N -0.233 5.233 8 C 0.062 3.938 9 C -0.545 4.545 10 H 0.082 0.918 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.722 3.278 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.210 1.210 17 C 0.008 3.992 18 C -0.093 4.093 19 C -0.201 4.201 20 C -0.231 4.231 21 C -0.131 4.131 22 O -0.078 6.078 23 N -0.176 5.176 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.188 0.812 28 H 0.118 0.882 29 H 0.077 0.923 30 H 0.029 0.971 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.134 0.866 35 H 0.171 0.829 36 H 0.158 0.842 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.618 14.868 5.090 15.798 hybrid contribution 0.235 -0.624 -0.512 0.841 sum -1.383 14.244 4.578 15.026 Atomic orbital electron populations 1.20328 0.87537 1.02930 1.02837 1.20345 0.98163 0.86703 1.01141 1.26732 0.95673 1.03567 1.16140 1.84097 1.06895 1.04279 1.68337 1.27172 0.93882 0.97482 1.00489 1.20773 0.93964 0.93137 0.93447 1.62456 1.45635 1.04890 1.10289 1.19949 0.94149 0.81126 0.98541 1.21093 1.40500 0.99944 0.92960 0.91817 1.24932 0.95384 0.96749 0.97185 1.69964 1.41850 1.10104 1.31424 0.86494 0.77538 0.79007 0.84721 1.19635 1.21127 1.21024 1.21059 0.82642 0.96875 0.98668 1.23795 0.99354 0.94670 0.91447 1.21784 0.92192 1.02690 1.03399 1.21834 1.00938 1.00968 0.99363 1.23843 0.83198 1.02800 1.03266 1.84037 1.27503 1.53001 1.43277 1.66128 1.04654 1.30931 1.15919 0.90731 0.90635 0.91152 0.81219 0.88217 0.92272 0.97122 0.94861 0.92947 0.91363 0.86618 0.82932 0.84160 0.79000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.31 36.00 0.37 -0.48 16 2 C 0.07 1.02 6.74 -84.23 -0.57 0.45 16 3 C -0.28 -3.67 11.13 29.12 0.32 -3.34 16 4 S 0.11 1.55 22.26 -107.50 -2.39 -0.84 16 5 C 0.09 1.56 6.37 -13.46 -0.09 1.47 16 6 C 0.12 2.23 5.45 -4.98 -0.03 2.21 16 7 N -0.51 -10.81 4.62 -238.96 -1.10 -11.91 16 8 C 0.19 4.66 4.47 -4.98 -0.02 4.63 16 9 C -0.51 -13.54 8.49 -34.44 -0.29 -13.83 16 10 H 0.06 1.69 7.11 -52.49 -0.37 1.32 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.89 -25.74 13.29 55.43 0.74 -25.01 16 13 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 C 0.14 2.60 5.59 -4.97 -0.03 2.58 16 18 C -0.04 -0.77 4.96 -35.62 -0.18 -0.94 16 19 C -0.18 -3.45 9.41 -39.70 -0.37 -3.82 16 20 C -0.21 -3.44 10.91 -39.71 -0.43 -3.87 16 21 C -0.06 -0.93 12.09 29.42 0.36 -0.57 16 22 O -0.18 -3.07 9.40 5.72 0.05 -3.01 16 23 N -0.46 -8.29 10.53 -8.06 -0.08 -8.38 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 27 H 0.17 1.66 8.06 -52.48 -0.42 1.23 16 28 H 0.10 1.93 7.74 -51.93 -0.40 1.53 16 29 H 0.06 1.09 5.79 -51.93 -0.30 0.79 16 30 H 0.01 0.29 5.99 -51.93 -0.31 -0.02 16 31 H 0.03 0.91 7.83 -51.93 -0.41 0.50 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.07 1.19 6.73 -51.93 -0.35 0.84 16 34 H 0.12 2.30 6.80 -51.93 -0.35 1.95 16 35 H 0.15 3.15 8.06 -52.49 -0.42 2.73 16 36 H 0.14 1.96 8.06 -52.48 -0.42 1.54 16 37 H 0.19 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 325.26 15.07 4.90 4.90 Total: -1.00 -30.41 325.26 -8.55 -38.96 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.59 Total: 3.19 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -1.05 Total: -14.01 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.45 Total: -45.30 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: 0.05 Total: -3.01 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.39 Total: -0.84 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.41 -8.55 -38.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088603206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.892 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds