Wall clock time and date at job start Tue Mar 31 2020 06:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33629 * 122.75325 * 2 1 4 4 S 1.76199 * 107.92712 * 180.02562 * 3 2 1 5 5 C 1.70975 * 90.28213 * 359.97438 * 4 3 2 6 6 C 1.50695 * 124.91838 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.47471 * 264.72583 * 6 5 4 8 8 C 1.46902 * 111.00036 * 199.38314 * 7 6 5 9 9 C 1.50697 * 109.46964 * 169.99897 * 8 7 6 10 10 H 1.07997 * 120.00264 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00007 * 179.97438 * 9 8 7 12 12 N 1.31519 * 120.00168 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00268 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46969 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47283 * 119.99888 * 13 11 9 16 16 H 1.48497 * 109.47179 * 240.00132 * 13 11 9 17 17 C 1.46904 * 110.99990 * 75.42834 * 7 6 5 18 18 C 1.50703 * 109.46893 * 61.79726 * 17 7 6 19 19 C 1.34519 * 125.78770 * 93.31348 * 18 17 7 20 20 C 1.41374 * 106.83860 * 180.02562 * 19 18 17 21 21 C 1.34513 * 106.84387 * 359.97438 * 20 19 18 22 22 O 1.34301 * 108.42167 * 0.02562 * 21 20 19 23 23 N 1.29020 * 110.16751 * 0.24415 * 5 4 3 24 24 H 1.09004 * 109.47293 * 89.97407 * 1 2 3 25 25 H 1.08996 * 109.47713 * 209.97470 * 1 2 3 26 26 H 1.09001 * 109.47321 * 329.97455 * 1 2 3 27 27 H 1.08006 * 126.03997 * 0.03777 * 3 2 1 28 28 H 1.08999 * 109.47713 * 144.72122 * 6 5 4 29 29 H 1.09000 * 109.46972 * 24.72524 * 6 5 4 30 30 H 1.09004 * 109.47162 * 289.99841 * 8 7 6 31 31 H 1.08993 * 109.47317 * 49.99727 * 8 7 6 32 32 H 0.96990 * 120.00362 * 179.97438 * 12 11 9 33 33 H 1.09000 * 109.46806 * 301.79788 * 17 7 6 34 34 H 1.08993 * 109.46899 * 181.80027 * 17 7 6 35 35 H 1.07996 * 126.57810 * 0.05708 * 19 18 17 36 36 H 1.08007 * 126.58066 * 180.02562 * 20 19 18 37 37 H 1.08005 * 125.79032 * 180.26435 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2299 1.1238 0.0000 4 16 3.9332 0.6730 -0.0007 5 6 3.5039 -0.9820 -0.0002 6 6 4.4833 -2.1273 -0.0010 7 7 4.7036 -2.5823 -1.3803 8 6 5.2614 -3.9411 -1.4036 9 6 5.2447 -4.4668 -2.8159 10 1 4.8587 -3.8527 -3.6161 11 6 5.7231 -5.7312 -3.0865 12 7 6.1945 -6.4785 -2.1123 13 14 5.7031 -6.3826 -4.8371 14 1 5.1275 -5.3546 -5.7412 15 1 7.0901 -6.6973 -5.2641 16 1 4.8751 -7.6138 -4.8977 17 6 5.5673 -1.6460 -2.1120 18 6 6.9159 -1.5790 -1.4427 19 6 7.9919 -2.3191 -1.7654 20 6 9.0318 -1.9341 -0.8885 21 6 8.5294 -0.9813 -0.0827 22 8 7.2474 -0.7705 -0.4228 23 7 2.2199 -1.1084 -0.0047 24 1 -0.3634 0.0005 -1.0277 25 1 -0.3634 -0.8901 0.5134 26 1 -0.3634 0.8897 0.5142 27 1 1.8392 2.1308 0.0006 28 1 4.0825 -2.9486 0.5929 29 1 5.4292 -1.7966 0.4279 30 1 6.2874 -3.9190 -1.0363 31 1 4.6614 -4.5911 -0.7669 32 1 6.5307 -7.3681 -2.3026 33 1 5.1119 -0.6557 -2.1117 34 1 5.6881 -1.9900 -3.1391 35 1 8.0502 -3.0641 -2.5452 36 1 10.0371 -2.3285 -0.8697 37 1 9.0670 -0.4697 0.7019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088603206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:21 Heat of formation + Delta-G solvation = 48.190427 kcal Electronic energy + Delta-G solvation = -21094.864561 eV Core-core repulsion = 17965.292160 eV Total energy + Delta-G solvation = -3129.572401 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.45260 -40.80973 -38.62545 -34.81333 -33.90521 -33.16698 -31.23005 -29.94504 -28.47438 -27.88598 -26.33355 -23.80365 -22.64178 -22.49205 -21.11885 -20.46037 -18.88040 -18.32003 -17.90283 -17.38982 -16.99060 -16.30848 -16.17976 -15.59707 -15.44571 -15.26683 -14.67260 -14.39165 -14.10010 -13.70306 -13.63022 -13.53586 -13.36355 -13.30116 -13.11992 -12.83315 -12.72576 -12.58287 -12.34411 -12.12387 -11.98009 -11.36785 -10.74024 -10.59317 -10.52367 -10.30618 -9.66307 -9.38093 -9.20375 -8.17846 -6.26367 -0.23903 0.46134 0.84995 0.88338 1.40600 1.42550 1.54576 1.78359 1.85948 2.16929 2.41230 3.08219 3.15633 3.34782 3.83948 4.03608 4.15442 4.22500 4.23872 4.32434 4.42058 4.46748 4.51952 4.75952 4.81838 4.88657 4.99297 5.02906 5.09428 5.18801 5.24727 5.32303 5.42123 5.61753 5.68143 5.98735 6.12988 6.29447 6.45693 6.86495 6.91216 7.41789 8.93330 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.005844 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.474907 B = 4789.968875 C = 6352.549964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.042 3.958 3 C -0.260 4.260 4 S 0.148 5.852 5 C 0.052 3.948 6 C 0.127 3.873 7 N -0.519 5.519 8 C 0.207 3.793 9 C -0.514 4.514 10 H 0.062 0.938 11 C 0.010 3.990 12 N -0.930 5.930 13 Si 0.961 3.039 14 H -0.264 1.264 15 H -0.279 1.279 16 H -0.282 1.282 17 C 0.143 3.857 18 C -0.053 4.053 19 C -0.203 4.203 20 C -0.231 4.231 21 C -0.039 4.039 22 O -0.182 6.182 23 N -0.493 5.493 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.102 0.898 27 H 0.210 0.790 28 H 0.080 0.920 29 H 0.063 0.937 30 H -0.007 1.007 31 H -0.001 1.001 32 H 0.263 0.737 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.161 0.839 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 17.624 5.269 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 C -0.399 4.399 4 S 0.402 5.598 5 C -0.227 4.227 6 C -0.005 4.005 7 N -0.242 5.242 8 C 0.081 3.919 9 C -0.553 4.553 10 H 0.080 0.920 11 C -0.189 4.189 12 N -0.570 5.570 13 Si 0.786 3.214 14 H -0.188 1.188 15 H -0.204 1.204 16 H -0.208 1.208 17 C 0.014 3.986 18 C -0.104 4.104 19 C -0.223 4.223 20 C -0.250 4.250 21 C -0.106 4.106 22 O -0.078 6.078 23 N -0.209 5.209 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.121 0.879 27 H 0.227 0.773 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.011 0.989 31 H 0.017 0.983 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.144 0.856 36 H 0.179 0.821 37 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -1.704 17.649 5.196 18.477 hybrid contribution 0.268 -1.355 -0.466 1.458 sum -1.436 16.294 4.730 17.027 Atomic orbital electron populations 1.20428 0.85252 1.04094 1.03538 1.20866 0.99746 0.86343 1.02052 1.27245 0.94657 1.04890 1.13107 1.83846 1.07673 1.01118 1.67124 1.26727 0.93725 0.98800 1.03405 1.20570 0.94676 0.93540 0.91679 1.62315 1.46002 1.03675 1.12221 1.19502 0.92466 0.82975 0.96933 1.21342 1.40070 1.00180 0.93677 0.92001 1.25746 0.94946 0.97007 1.01165 1.70084 1.42847 1.10499 1.33571 0.85460 0.77719 0.78286 0.79938 1.18792 1.20435 1.20823 1.20888 0.83117 0.96922 0.97644 1.23450 0.98851 0.95617 0.92498 1.21777 0.94042 1.02631 1.03876 1.22090 1.01448 1.02002 0.99412 1.24777 0.81925 1.01281 1.02667 1.84031 1.28758 1.52513 1.42543 1.66107 1.05324 1.33406 1.16104 0.90195 0.91562 0.87940 0.77279 0.90200 0.91884 0.98933 0.98327 0.92827 0.89547 0.88120 0.85597 0.82126 0.73986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.47 10.31 71.23 0.73 -0.74 16 2 C 0.04 1.15 6.74 41.52 0.28 1.43 16 3 C -0.26 -5.89 11.13 66.77 0.74 -5.14 16 4 S 0.15 3.89 22.26 -56.49 -1.26 2.64 16 5 C 0.05 1.79 6.37 88.52 0.56 2.36 16 6 C 0.13 4.96 5.45 85.56 0.47 5.42 16 7 N -0.52 -22.96 4.62 -909.95 -4.21 -27.17 16 8 C 0.21 10.92 4.47 85.56 0.38 11.30 16 9 C -0.51 -28.60 8.49 25.60 0.22 -28.38 16 10 H 0.06 3.39 7.11 -2.91 -0.02 3.37 16 11 C 0.01 0.55 5.46 84.65 0.46 1.01 16 12 N -0.93 -55.35 13.29 21.45 0.28 -55.07 16 13 Si 0.96 44.18 29.54 68.60 2.03 46.20 16 14 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 17 C 0.14 5.58 5.59 85.56 0.48 6.06 16 18 C -0.05 -1.98 4.96 24.83 0.12 -1.86 16 19 C -0.20 -7.96 9.41 22.19 0.21 -7.75 16 20 C -0.23 -7.25 10.91 22.19 0.24 -7.00 16 21 C -0.04 -1.05 12.09 66.97 0.81 -0.24 16 22 O -0.18 -5.87 9.40 -2.46 -0.02 -5.89 16 23 N -0.49 -17.67 10.53 -179.42 -1.89 -19.56 16 24 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.10 1.34 8.12 -2.39 -0.02 1.32 16 27 H 0.21 2.97 8.06 -2.91 -0.02 2.94 16 28 H 0.08 3.34 7.74 -2.39 -0.02 3.32 16 29 H 0.06 2.36 5.79 -2.39 -0.01 2.35 16 30 H -0.01 -0.39 5.99 -2.39 -0.01 -0.41 16 31 H 0.00 -0.08 7.83 -2.39 -0.02 -0.10 16 32 H 0.26 14.78 8.31 -92.72 -0.77 14.01 16 33 H 0.09 3.00 6.73 -2.39 -0.02 2.99 16 34 H 0.10 4.17 6.80 -2.39 -0.02 4.16 16 35 H 0.13 5.55 8.06 -2.91 -0.02 5.53 16 36 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 37 H 0.24 3.80 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -68.62 325.26 1.73 -66.89 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.08 Total: 15.49 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 5.71 Total: -23.53 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -5.81 Total: -101.80 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.02 Total: -5.89 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -1.26 Total: 2.64 kcal Total: -68.62 1.73 -66.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088603206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.082 kcal (2) G-P(sol) polarization free energy of solvation -68.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds