Wall clock time and date at job start Tue Mar 31 2020 06:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.47077 * 2 1 4 4 C 1.36934 * 119.99719 * 275.39216 * 3 2 1 5 5 H 1.08005 * 119.99795 * 33.93261 * 4 3 2 6 6 C 1.38802 * 120.00194 * 213.92531 * 4 3 2 7 7 N 1.31619 * 120.00288 * 23.19533 * 6 4 3 8 8 Si 1.86809 * 120.00409 * 203.19101 * 6 4 3 9 9 H 1.48500 * 109.46719 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47034 * 119.99787 * 8 6 4 11 11 H 1.48495 * 109.47115 * 240.00436 * 8 6 4 12 12 C 1.46497 * 119.99866 * 95.39638 * 3 2 1 13 13 C 1.50692 * 109.47283 * 269.99461 * 12 3 2 14 14 C 1.33700 * 125.86357 * 89.71800 * 13 12 3 15 15 N 1.31324 * 115.87298 * 179.84660 * 14 13 12 16 16 C 1.30491 * 116.97352 * 0.45827 * 15 14 13 17 17 C 1.47102 * 125.48654 * 179.79166 * 16 15 14 18 18 C 1.36264 * 125.95791 * 359.67214 * 17 16 15 19 19 C 1.40795 * 106.72058 * 179.90952 * 18 17 16 20 20 C 1.34820 * 107.07061 * 0.35493 * 19 18 17 21 21 C 1.50702 * 125.63362 * 179.75883 * 20 19 18 22 22 O 1.34276 * 108.72657 * 359.77873 * 20 19 18 23 23 S 1.76173 * 109.02850 * 359.75408 * 16 15 14 24 24 H 1.08995 * 109.47032 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47526 * 300.00629 * 1 2 3 26 26 H 1.09012 * 109.46779 * 60.00627 * 1 2 3 27 27 H 1.09000 * 109.47526 * 239.99371 * 2 1 3 28 28 H 1.09003 * 109.46666 * 119.99160 * 2 1 3 29 29 H 0.96997 * 120.00763 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47387 * 30.00356 * 12 3 2 31 31 H 1.09000 * 109.46735 * 150.00012 * 12 3 2 32 32 H 1.07997 * 122.05664 * 0.03930 * 14 13 12 33 33 H 1.07996 * 126.64127 * 0.02562 * 18 17 16 34 34 H 1.07995 * 126.45983 * 180.10767 * 19 18 17 35 35 H 1.09002 * 109.47074 * 179.97438 * 21 20 19 36 36 H 1.08998 * 109.47151 * 299.99856 * 21 20 19 37 37 H 1.09001 * 109.47452 * 60.00024 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1415 2.0639 -1.1807 5 1 1.4415 1.8848 -1.9835 6 6 3.1657 2.9860 -1.3457 7 7 4.2552 2.8978 -0.6125 8 14 2.9981 4.3523 -2.6085 9 1 1.6878 4.2319 -3.2970 10 1 3.0793 5.6691 -1.9268 11 1 4.0934 4.2424 -3.6052 12 6 2.3750 2.0321 1.2631 13 6 1.1638 2.7268 1.8298 14 6 0.2665 2.1846 2.6595 15 7 -0.7151 2.9718 3.0358 16 6 -0.7166 4.1859 2.5576 17 6 -1.7237 5.2175 2.8498 18 6 -2.8118 5.0678 3.6563 19 6 -3.4936 6.2996 3.6497 20 6 -2.8025 7.1301 2.8432 21 6 -3.1685 8.5586 2.5328 22 8 -1.7345 6.4738 2.3618 23 16 0.6824 4.3911 1.5066 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8902 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 4.9711 3.5419 -0.7280 30 1 2.7284 1.2824 1.9711 31 1 3.1632 2.7636 1.0850 32 1 0.3458 1.1634 3.0016 33 1 -3.0952 4.1772 4.1976 34 1 -4.4013 6.5337 4.1859 35 1 -2.4295 8.9837 1.8537 36 1 -4.1523 8.5881 2.0645 37 1 -3.1882 9.1375 3.4562 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092399175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:04 Heat of formation + Delta-G solvation = 60.841371 kcal Electronic energy + Delta-G solvation = -20646.717411 eV Core-core repulsion = 17517.693596 eV Total energy + Delta-G solvation = -3129.023815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.61271 -40.40521 -37.90078 -34.28307 -33.96358 -33.61524 -32.17329 -30.45517 -28.82580 -26.75663 -25.51619 -24.55913 -23.04601 -22.21130 -21.76223 -20.44138 -19.20617 -18.50617 -17.49910 -17.40354 -16.90390 -16.03859 -15.84372 -15.63048 -15.25329 -15.07978 -14.64191 -14.18361 -14.00330 -13.89158 -13.85457 -13.73534 -13.53235 -13.26281 -12.93324 -12.78770 -12.69640 -12.52060 -12.40776 -12.05633 -11.74457 -11.65065 -11.07235 -10.74630 -10.62997 -10.34586 -10.18219 -8.84568 -8.73663 -7.95914 -5.49555 -0.66494 0.32027 0.77355 0.89690 1.36297 1.42715 1.49779 1.53624 1.53902 2.06760 2.43102 3.13981 3.32534 3.69622 3.87405 3.99181 4.02445 4.30820 4.39539 4.45922 4.53533 4.70376 4.74960 4.76767 4.77797 4.79791 4.92277 5.01359 5.05371 5.14607 5.22824 5.24697 5.52855 5.54322 5.55412 5.64507 6.01356 6.35293 6.65482 7.04366 7.73203 8.23399 9.01328 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.005216 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.008254 B = 5366.749138 C = 6442.186759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.138 3.862 3 N -0.585 5.585 4 C -0.258 4.258 5 H 0.052 0.948 6 C -0.021 4.021 7 N -0.904 5.904 8 Si 0.930 3.070 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.283 1.283 12 C 0.203 3.797 13 C -0.173 4.173 14 C 0.012 3.988 15 N -0.454 5.454 16 C 0.096 3.904 17 C 0.010 3.990 18 C -0.139 4.139 19 C -0.214 4.214 20 C 0.001 3.999 21 C -0.074 4.074 22 O -0.190 6.190 23 S 0.074 5.926 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.026 0.974 27 H 0.041 0.959 28 H 0.060 0.940 29 H 0.256 0.744 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.193 0.807 33 H 0.164 0.836 34 H 0.189 0.811 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.473 6.559 8.850 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.013 3.987 3 N -0.304 5.304 4 C -0.389 4.389 5 H 0.070 0.930 6 C -0.220 4.220 7 N -0.547 5.547 8 Si 0.758 3.242 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 C 0.074 3.926 13 C -0.298 4.298 14 C -0.139 4.139 15 N -0.170 5.170 16 C -0.177 4.177 17 C -0.043 4.043 18 C -0.163 4.163 19 C -0.233 4.233 20 C -0.051 4.051 21 C -0.130 4.130 22 O -0.087 6.087 23 S 0.329 5.671 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.209 0.791 33 H 0.182 0.818 34 H 0.206 0.794 35 H 0.094 0.906 36 H 0.129 0.871 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.021 7.359 8.323 17.117 hybrid contribution 0.316 -0.325 -0.572 0.730 sum -12.706 7.033 7.751 16.462 Atomic orbital electron populations 1.22202 0.98175 1.00860 1.00346 1.21043 0.92965 0.84838 0.99872 1.44041 1.75379 1.09556 1.01426 1.19159 1.07151 1.19261 0.93339 0.93000 1.25509 0.93993 1.02589 0.99906 1.70034 1.05057 1.36236 1.43420 0.85779 0.77965 0.80656 0.79811 1.19663 1.21191 1.20991 1.19541 0.90489 0.96444 0.86089 1.27540 1.06228 0.94813 1.01222 1.21595 0.90552 1.01374 1.00400 1.66436 1.24831 1.01435 1.24302 1.24049 0.98465 0.93920 1.01254 1.18691 0.98331 0.83231 1.04013 1.22105 0.93554 1.00719 0.99909 1.21896 1.04307 0.92209 1.04909 1.23619 0.86272 0.97656 0.97559 1.20619 1.03517 0.84125 1.04775 1.84017 1.43743 1.21946 1.59030 1.85350 1.21754 1.14070 1.45893 0.91159 0.93658 0.95469 0.94075 0.92150 0.93443 0.91119 0.89773 0.79079 0.81848 0.79377 0.90606 0.87102 0.86927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.55 10.21 71.98 0.73 -4.82 16 2 C 0.14 5.45 6.44 86.38 0.56 6.00 16 3 N -0.58 -27.80 2.44 -706.35 -1.73 -29.52 16 4 C -0.26 -13.77 9.48 84.03 0.80 -12.97 16 5 H 0.05 2.84 7.93 -2.91 -0.02 2.82 16 6 C -0.02 -1.15 4.95 84.86 0.42 -0.73 16 7 N -0.90 -50.40 11.32 21.65 0.25 -50.15 16 8 Si 0.93 44.03 29.61 68.60 2.03 46.06 16 9 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 10 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 C 0.20 9.17 5.86 85.63 0.50 9.68 16 13 C -0.17 -7.22 6.13 24.65 0.15 -7.07 16 14 C 0.01 0.46 9.52 83.74 0.80 1.26 16 15 N -0.45 -17.26 10.52 -190.41 -2.00 -19.26 16 16 C 0.10 3.71 7.46 87.22 0.65 4.36 16 17 C 0.01 0.33 7.22 24.14 0.17 0.51 16 18 C -0.14 -3.85 10.80 22.44 0.24 -3.60 16 19 C -0.21 -4.54 10.78 22.11 0.24 -4.30 16 20 C 0.00 0.02 7.31 24.90 0.18 0.20 16 21 C -0.07 -0.92 10.41 71.24 0.74 -0.18 16 22 O -0.19 -6.09 10.67 -6.88 -0.07 -6.16 16 23 S 0.07 3.12 23.42 -56.49 -1.32 1.79 16 24 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.04 1.63 6.33 -2.39 -0.02 1.61 16 26 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 28 H 0.06 2.11 7.83 -2.39 -0.02 2.09 16 29 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 30 H 0.07 2.88 7.86 -2.39 -0.02 2.86 16 31 H 0.08 4.38 5.32 -2.39 -0.01 4.37 16 32 H 0.19 6.04 8.02 -2.91 -0.02 6.01 16 33 H 0.16 4.15 8.06 -2.91 -0.02 4.13 16 34 H 0.19 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -63.82 332.39 4.41 -59.41 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 1.07 Total: 9.50 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 6.19 Total: -11.67 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -3.48 Total: -98.94 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.07 Total: -6.16 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.32 Total: 1.79 kcal Total: -63.82 4.41 -59.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092399175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.251 kcal (2) G-P(sol) polarization free energy of solvation -63.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds